Wall clock time and date at job start Mon Mar 30 2020 03:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46896 * 70.98644 * 3 2 1 5 5 N 1.46895 * 112.85451 * 305.10611 * 4 3 2 6 6 C 1.46904 * 111.00111 * 289.24938 * 5 4 3 7 7 C 1.52996 * 109.47292 * 175.87460 * 6 5 4 8 8 H 1.09000 * 109.47118 * 60.00190 * 7 6 5 9 9 O 1.42900 * 109.47257 * 300.00248 * 7 6 5 10 10 C 1.50701 * 109.47149 * 179.97438 * 7 6 5 11 11 H 1.07997 * 119.99861 * 359.97438 * 10 7 6 12 12 C 1.37871 * 120.00113 * 180.02562 * 10 7 6 13 13 N 1.31520 * 120.00111 * 359.97438 * 12 10 7 14 14 Si 1.86802 * 120.00348 * 179.97438 * 12 10 7 15 15 H 1.48508 * 109.46784 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47117 * 119.99607 * 14 12 10 17 17 H 1.48493 * 109.47314 * 240.00055 * 14 12 10 18 18 C 1.53789 * 113.69138 * 76.37759 * 4 3 2 19 19 C 1.53781 * 87.08108 * 89.12616 * 18 4 3 20 20 C 1.53781 * 87.08334 * 25.43068 * 19 18 4 21 21 H 4.44637 * 5.63253 * 180.02562 * 4 1 2 22 22 H 1.08998 * 109.47674 * 310.98739 * 3 2 1 23 23 H 1.09001 * 109.47160 * 190.98334 * 3 2 1 24 24 H 1.00896 * 111.00589 * 165.28847 * 5 4 3 25 25 H 1.09000 * 109.46883 * 55.87507 * 6 5 4 26 26 H 1.08994 * 109.46840 * 295.88116 * 6 5 4 27 27 H 0.96700 * 113.99570 * 299.99608 * 9 7 6 28 28 H 0.96998 * 120.00040 * 180.02562 * 13 12 10 29 29 H 1.09002 * 113.60862 * 203.67253 * 18 4 3 30 30 H 1.08999 * 113.60908 * 334.57918 * 18 4 3 31 31 H 1.09000 * 113.61070 * 270.88378 * 19 18 4 32 32 H 1.09000 * 113.69316 * 139.99211 * 19 18 4 33 33 H 1.08996 * 113.61560 * 220.01580 * 20 19 18 34 34 H 1.08998 * 113.68850 * 89.12785 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1561 -0.4691 -1.3638 5 7 2.6129 -1.7761 -1.7569 6 6 3.1831 -2.8519 -0.9351 7 6 2.5197 -4.1807 -1.3026 8 1 2.6966 -4.3959 -2.3564 9 8 1.1135 -4.0932 -1.0639 10 6 3.1051 -5.2845 -0.4599 11 1 3.8737 -5.0606 0.2649 12 6 2.6601 -6.5802 -0.6151 13 7 1.7244 -6.8528 -1.4982 14 14 3.3862 -7.9485 0.4289 15 1 4.4142 -7.3837 1.3398 16 1 2.3098 -8.5833 1.2311 17 1 4.0114 -8.9659 -0.4537 18 6 3.0489 0.5990 -2.4651 19 6 4.4520 1.0643 -2.0411 20 6 4.6824 -0.3641 -1.5201 21 1 -1.0499 0.0002 -0.0001 22 1 3.0097 -0.6732 0.7757 23 1 3.0089 1.0097 0.1958 24 1 2.7663 -1.9510 -2.7387 25 1 3.0062 -2.6368 0.1187 26 1 4.2557 -2.9186 -1.1171 27 1 0.8818 -3.9033 -0.1445 28 1 1.4111 -7.7643 -1.6071 29 1 3.0121 0.1850 -3.4727 30 1 2.2696 1.3387 -2.2814 31 1 4.4426 1.8195 -1.2552 32 1 5.0960 1.3328 -2.8785 33 1 5.2219 -0.4020 -0.5738 34 1 5.0924 -1.0424 -2.2684 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933297229.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:23 Heat of formation + Delta-G solvation = 18.667429 kcal Electronic energy + Delta-G solvation = -15406.670724 eV Core-core repulsion = 12920.533955 eV Total energy + Delta-G solvation = -2486.136769 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.70664 -35.84155 -33.31685 -32.60932 -31.99255 -28.56135 -27.56389 -25.68810 -24.42215 -22.38222 -20.39567 -18.95555 -17.48066 -16.77400 -15.93969 -15.25754 -14.57880 -14.41259 -13.97708 -13.83779 -13.33074 -12.98562 -12.88668 -12.25123 -12.22534 -11.83801 -11.11210 -11.08381 -10.91031 -10.79228 -10.70681 -10.48596 -10.23995 -9.97076 -9.66795 -9.62328 -8.93433 -8.54034 -8.01871 -7.58214 -5.96500 -4.14670 3.27389 3.28376 3.32751 3.36511 3.39655 4.37972 4.52842 4.68982 4.80262 4.83925 4.95018 5.09902 5.31191 5.63666 5.64654 5.78920 5.85029 5.89687 5.95770 6.07962 6.18229 6.26547 6.33685 6.38478 6.51236 6.61721 6.92731 7.69193 7.75401 7.89847 8.02737 8.13292 8.26357 8.89824 9.51623 9.68715 11.07646 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.035351 B = 0.006999 C = 0.006448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.858583 B = 3999.455480 C = 4341.674112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.158 4.158 3 C 0.019 3.981 4 C 0.102 3.898 5 N -0.662 5.662 6 C 0.038 3.962 7 C 0.235 3.765 8 H 0.049 0.951 9 O -0.553 6.553 10 C -0.572 4.572 11 H 0.054 0.946 12 C 0.079 3.921 13 N -0.859 5.859 14 Si 0.887 3.113 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.131 4.131 19 C -0.141 4.141 20 C -0.170 4.170 21 H 0.210 0.790 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.337 0.663 25 H 0.058 0.942 26 H 0.022 0.978 27 H 0.342 0.658 28 H 0.259 0.741 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.495 14.213 0.868 14.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.158 4.158 3 C -0.018 4.018 4 C 0.009 3.991 5 N -0.292 5.292 6 C -0.091 4.091 7 C 0.177 3.823 8 H 0.067 0.933 9 O -0.354 6.354 10 C -0.610 4.610 11 H 0.072 0.928 12 C -0.127 4.127 13 N -0.495 5.495 14 Si 0.715 3.285 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.169 4.169 19 C -0.178 4.178 20 C -0.209 4.209 21 H 0.227 0.773 22 H 0.104 0.896 23 H 0.101 0.899 24 H 0.156 0.844 25 H 0.076 0.924 26 H 0.040 0.960 27 H 0.185 0.815 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.792 13.987 0.506 14.272 hybrid contribution 1.267 -0.885 0.769 1.726 sum 4.059 13.102 1.275 13.775 Atomic orbital electron populations 1.24627 0.95719 1.01849 1.01255 1.22501 0.93870 0.99564 0.99834 1.18401 0.85867 1.01142 0.96381 1.22160 0.91313 0.91390 0.94187 1.60267 1.61094 0.99970 1.07826 1.22833 0.96080 0.93272 0.96868 1.19275 0.79185 0.87318 0.96507 0.93282 1.86552 1.25203 1.94182 1.29488 1.21694 1.23253 0.93110 1.22987 0.92756 1.25032 0.94304 0.98604 0.94765 1.70100 1.26984 1.19403 1.32977 0.86642 0.79139 0.82253 0.80479 1.19779 1.20875 1.20933 1.23101 0.96878 0.98186 0.98736 1.22767 0.97414 0.96820 1.00837 1.23664 0.98510 0.97125 1.01650 0.77292 0.89634 0.89909 0.84450 0.92352 0.95976 0.81540 0.93111 0.89971 0.91294 0.90311 0.91634 0.91521 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.32 19.25 29.55 0.57 -2.75 16 2 C -0.16 -2.51 12.77 -37.12 -0.47 -2.99 16 3 C 0.02 0.27 4.87 -29.52 -0.14 0.12 16 4 C 0.10 1.47 0.70 -130.78 -0.09 1.38 16 5 N -0.66 -11.94 5.84 -99.14 -0.58 -12.52 16 6 C 0.04 0.79 4.89 -3.82 -0.02 0.77 16 7 C 0.24 6.06 3.06 -27.88 -0.09 5.97 16 8 H 0.05 1.39 8.14 -51.93 -0.42 0.96 16 9 O -0.55 -14.86 12.60 -35.23 -0.44 -15.30 16 10 C -0.57 -15.92 8.76 -34.44 -0.30 -16.22 16 11 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 12 C 0.08 2.24 5.40 -17.82 -0.10 2.15 16 13 N -0.86 -25.85 12.84 55.43 0.71 -25.14 16 14 Si 0.89 21.41 29.54 -169.99 -5.02 16.38 16 15 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 C -0.13 -1.63 7.26 -25.91 -0.19 -1.82 16 19 C -0.14 -1.50 7.73 -25.92 -0.20 -1.70 16 20 C -0.17 -2.16 6.38 -25.92 -0.17 -2.33 16 21 H 0.21 2.53 7.80 -54.10 -0.42 2.11 16 22 H 0.09 1.23 7.15 -51.93 -0.37 0.86 16 23 H 0.08 0.94 7.32 -51.93 -0.38 0.56 16 24 H 0.34 6.03 8.48 -39.29 -0.33 5.70 16 25 H 0.06 1.21 6.89 -51.93 -0.36 0.86 16 26 H 0.02 0.45 7.45 -51.93 -0.39 0.06 16 27 H 0.34 8.48 9.04 45.56 0.41 8.89 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.08 1.02 7.94 -51.93 -0.41 0.61 16 30 H 0.07 0.85 8.03 -51.93 -0.42 0.44 16 31 H 0.08 0.75 7.61 -51.93 -0.40 0.35 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 34 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 LS Contribution 289.44 15.07 4.36 4.36 Total: -1.00 -31.19 289.44 -6.46 -37.64 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -4.29 Total: 11.99 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -1.20 Total: -17.42 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.13 Total: -37.66 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.44 Total: -15.30 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.19 -6.46 -37.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933297229.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.312 kcal (2) G-P(sol) polarization free energy of solvation -31.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds