Wall clock time and date at job start Mon Mar 30 2020 03:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46896 * 70.98644 * 3 2 1 5 5 N 1.46895 * 112.85451 * 305.10611 * 4 3 2 6 6 C 1.46904 * 111.00111 * 289.24938 * 5 4 3 7 7 C 1.52996 * 109.47292 * 175.87460 * 6 5 4 8 8 H 1.09000 * 109.47118 * 60.00190 * 7 6 5 9 9 O 1.42900 * 109.47257 * 300.00248 * 7 6 5 10 10 C 1.50701 * 109.47149 * 179.97438 * 7 6 5 11 11 H 1.07997 * 119.99861 * 359.97438 * 10 7 6 12 12 C 1.37871 * 120.00113 * 180.02562 * 10 7 6 13 13 N 1.31520 * 120.00111 * 359.97438 * 12 10 7 14 14 Si 1.86802 * 120.00348 * 179.97438 * 12 10 7 15 15 H 1.48508 * 109.46784 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47117 * 119.99607 * 14 12 10 17 17 H 1.48493 * 109.47314 * 240.00055 * 14 12 10 18 18 C 1.53789 * 113.69138 * 76.37759 * 4 3 2 19 19 C 1.53781 * 87.08108 * 89.12616 * 18 4 3 20 20 C 1.53781 * 87.08334 * 25.43068 * 19 18 4 21 21 H 4.44637 * 5.63253 * 180.02562 * 4 1 2 22 22 H 1.08998 * 109.47674 * 310.98739 * 3 2 1 23 23 H 1.09001 * 109.47160 * 190.98334 * 3 2 1 24 24 H 1.00896 * 111.00589 * 165.28847 * 5 4 3 25 25 H 1.09000 * 109.46883 * 55.87507 * 6 5 4 26 26 H 1.08994 * 109.46840 * 295.88116 * 6 5 4 27 27 H 0.96700 * 113.99570 * 299.99608 * 9 7 6 28 28 H 0.96998 * 120.00040 * 180.02562 * 13 12 10 29 29 H 1.09002 * 113.60862 * 203.67253 * 18 4 3 30 30 H 1.08999 * 113.60908 * 334.57918 * 18 4 3 31 31 H 1.09000 * 113.61070 * 270.88378 * 19 18 4 32 32 H 1.09000 * 113.69316 * 139.99211 * 19 18 4 33 33 H 1.08996 * 113.61560 * 220.01580 * 20 19 18 34 34 H 1.08998 * 113.68850 * 89.12785 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1561 -0.4691 -1.3638 5 7 2.6129 -1.7761 -1.7569 6 6 3.1831 -2.8519 -0.9351 7 6 2.5197 -4.1807 -1.3026 8 1 2.6966 -4.3959 -2.3564 9 8 1.1135 -4.0932 -1.0639 10 6 3.1051 -5.2845 -0.4599 11 1 3.8737 -5.0606 0.2649 12 6 2.6601 -6.5802 -0.6151 13 7 1.7244 -6.8528 -1.4982 14 14 3.3862 -7.9485 0.4289 15 1 4.4142 -7.3837 1.3398 16 1 2.3098 -8.5833 1.2311 17 1 4.0114 -8.9659 -0.4537 18 6 3.0489 0.5990 -2.4651 19 6 4.4520 1.0643 -2.0411 20 6 4.6824 -0.3641 -1.5201 21 1 -1.0499 0.0002 -0.0001 22 1 3.0097 -0.6732 0.7757 23 1 3.0089 1.0097 0.1958 24 1 2.7663 -1.9510 -2.7387 25 1 3.0062 -2.6368 0.1187 26 1 4.2557 -2.9186 -1.1171 27 1 0.8818 -3.9033 -0.1445 28 1 1.4111 -7.7643 -1.6071 29 1 3.0121 0.1850 -3.4727 30 1 2.2696 1.3387 -2.2814 31 1 4.4426 1.8195 -1.2552 32 1 5.0960 1.3328 -2.8785 33 1 5.2219 -0.4020 -0.5738 34 1 5.0924 -1.0424 -2.2684 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933297229.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:22 Heat of formation + Delta-G solvation = -3.789740 kcal Electronic energy + Delta-G solvation = -15407.644540 eV Core-core repulsion = 12920.533955 eV Total energy + Delta-G solvation = -2487.110585 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.81868 -37.79821 -34.54064 -34.25351 -34.01157 -30.02317 -29.16003 -26.82667 -26.12430 -23.61298 -22.24931 -20.04481 -19.07385 -18.43707 -17.22946 -16.66417 -16.41473 -16.05351 -15.67814 -15.16318 -14.91148 -14.53002 -14.03966 -13.72145 -13.46459 -13.17362 -12.97996 -12.84861 -12.81867 -12.18074 -12.11076 -11.79596 -11.68448 -11.32125 -11.01123 -10.80797 -10.78662 -10.69796 -10.04691 -9.02472 -8.13069 -6.39217 1.38998 1.40060 1.52338 2.08075 2.14163 2.38392 3.12670 3.28915 3.61200 3.70366 3.87900 3.91268 4.04688 4.34079 4.47517 4.63267 4.69872 4.71199 4.77066 4.85974 4.89748 5.07873 5.09951 5.15147 5.22170 5.34325 5.50674 5.61124 5.77901 6.06897 6.30486 6.57671 6.76090 6.95446 7.34866 7.61203 8.91638 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.035351 B = 0.006999 C = 0.006448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.858583 B = 3999.455480 C = 4341.674112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.184 4.184 3 C 0.018 3.982 4 C 0.090 3.910 5 N -0.673 5.673 6 C 0.064 3.936 7 C 0.233 3.767 8 H 0.015 0.985 9 O -0.568 6.568 10 C -0.586 4.586 11 H 0.059 0.941 12 C 0.024 3.976 13 N -0.901 5.901 14 Si 0.961 3.039 15 H -0.263 1.263 16 H -0.279 1.279 17 H -0.278 1.278 18 C -0.129 4.129 19 C -0.122 4.122 20 C -0.169 4.169 21 H 0.232 0.768 22 H 0.078 0.922 23 H 0.113 0.887 24 H 0.335 0.665 25 H 0.057 0.943 26 H 0.024 0.976 27 H 0.349 0.651 28 H 0.261 0.739 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.580 15.305 1.738 16.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.184 4.184 3 C -0.019 4.019 4 C -0.002 4.002 5 N -0.302 5.302 6 C -0.066 4.066 7 C 0.175 3.825 8 H 0.033 0.967 9 O -0.371 6.371 10 C -0.624 4.624 11 H 0.077 0.923 12 C -0.178 4.178 13 N -0.538 5.538 14 Si 0.785 3.215 15 H -0.187 1.187 16 H -0.205 1.205 17 H -0.204 1.204 18 C -0.167 4.167 19 C -0.160 4.160 20 C -0.209 4.209 21 H 0.248 0.752 22 H 0.096 0.904 23 H 0.131 0.869 24 H 0.153 0.847 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.192 0.808 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.892 15.104 1.385 15.659 hybrid contribution 0.878 -1.183 0.467 1.545 sum 4.770 13.921 1.851 14.832 Atomic orbital electron populations 1.25380 0.96773 1.01561 1.00788 1.23134 0.94941 0.99974 1.00323 1.18534 0.84952 1.02668 0.95757 1.22409 0.92668 0.89796 0.95279 1.60186 1.61795 1.00940 1.07313 1.22323 0.95515 0.91689 0.97035 1.19187 0.79052 0.89870 0.94345 0.96730 1.86499 1.26047 1.94449 1.30109 1.22083 1.23230 0.94069 1.23053 0.92317 1.25924 0.94603 1.01338 0.95967 1.70240 1.28650 1.20077 1.34843 0.85499 0.78453 0.78808 0.78731 1.18664 1.20510 1.20402 1.23097 0.98374 0.97417 0.97839 1.22728 0.95853 0.95747 1.01646 1.23612 0.96801 0.98585 1.01857 0.75174 0.90351 0.86891 0.84728 0.92416 0.95741 0.80769 0.93040 0.90297 0.91088 0.88381 0.90199 0.90899 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -6.75 19.25 74.32 1.43 -5.32 16 2 C -0.18 -5.66 12.77 31.13 0.40 -5.26 16 3 C 0.02 0.47 4.87 28.79 0.14 0.61 16 4 C 0.09 2.46 0.70 4.06 0.00 2.47 16 5 N -0.67 -24.18 5.84 -467.57 -2.73 -26.91 16 6 C 0.06 2.63 4.89 86.30 0.42 3.05 16 7 C 0.23 12.27 3.06 29.85 0.09 12.36 16 8 H 0.01 0.87 8.14 -2.39 -0.02 0.85 16 9 O -0.57 -31.21 12.60 -148.98 -1.88 -33.08 16 10 C -0.59 -32.81 8.76 25.60 0.22 -32.58 16 11 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 12 C 0.02 1.36 5.40 84.65 0.46 1.81 16 13 N -0.90 -55.09 12.84 21.45 0.28 -54.81 16 14 Si 0.96 43.94 29.54 68.60 2.03 45.96 16 15 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 16 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 18 C -0.13 -2.96 7.26 31.12 0.23 -2.73 16 19 C -0.12 -2.21 7.73 31.12 0.24 -1.97 16 20 C -0.17 -3.95 6.38 31.12 0.20 -3.75 16 21 H 0.23 5.30 7.80 -4.42 -0.03 5.27 16 22 H 0.08 2.16 7.15 -2.39 -0.02 2.14 16 23 H 0.11 2.24 7.32 -2.39 -0.02 2.22 16 24 H 0.33 12.13 8.48 -89.70 -0.76 11.37 16 25 H 0.06 2.38 6.89 -2.39 -0.02 2.37 16 26 H 0.02 0.99 7.45 -2.39 -0.02 0.97 16 27 H 0.35 17.61 9.04 -74.06 -0.67 16.94 16 28 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 29 H 0.08 1.85 7.94 -2.39 -0.02 1.83 16 30 H 0.07 1.60 8.03 -2.39 -0.02 1.58 16 31 H 0.10 1.44 7.61 -2.39 -0.02 1.42 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 1.61 8.10 -2.39 -0.02 1.60 16 34 H 0.07 1.84 8.10 -2.39 -0.02 1.82 16 Total: -1.00 -66.67 289.44 1.19 -65.48 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: -0.34 Total: 34.69 kcal Atomic # 6 Polarization: -35.16 SS G_CDS: 3.83 Total: -31.33 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -2.46 Total: -81.73 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -1.88 Total: -33.08 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -66.67 1.19 -65.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933297229.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.691 kcal (2) G-P(sol) polarization free energy of solvation -66.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds