Wall clock time and date at job start Mon Mar 30 2020 02:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42891 * 112.94378 * 50.33064 * 9 7 2 11 11 C 1.53937 * 113.73251 * 278.76176 * 9 7 2 12 12 N 1.48184 * 86.10300 * 221.96355 * 11 9 7 13 13 C 1.46900 * 111.07654 * 137.52119 * 12 11 9 14 14 C 1.53004 * 109.47083 * 90.56371 * 13 12 11 15 15 C 1.54639 * 111.03821 * 287.02441 * 14 13 12 16 16 C 1.51092 * 104.72877 * 217.33711 * 15 14 13 17 17 C 1.30524 * 111.10685 * 16.43482 * 16 15 14 18 18 C 1.51108 * 111.10001 * 0.02562 * 17 16 15 19 19 C 1.47960 * 90.80064 * 24.59714 * 12 11 9 20 20 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 21 21 H 0.96701 * 114.00462 * 309.66689 * 10 9 7 22 22 H 1.09004 * 113.75714 * 336.24047 * 11 9 7 23 23 H 1.08998 * 113.75976 * 107.60271 * 11 9 7 24 24 H 1.08995 * 109.47316 * 210.56763 * 13 12 11 25 25 H 1.09002 * 109.46915 * 330.56697 * 13 12 11 26 26 H 1.08991 * 110.91476 * 51.03698 * 14 13 12 27 27 H 1.09003 * 110.38546 * 336.15243 * 15 14 13 28 28 H 1.09002 * 110.38306 * 98.51790 * 15 14 13 29 29 H 1.08003 * 124.45025 * 196.45942 * 16 15 14 30 30 H 1.07994 * 124.45139 * 179.97438 * 17 16 15 31 31 H 1.09006 * 110.38655 * 224.74679 * 18 17 16 32 32 H 1.09001 * 110.48500 * 102.42595 * 18 17 16 33 33 H 1.08999 * 113.76188 * 221.08263 * 19 12 11 34 34 H 1.09010 * 113.75297 * 89.72463 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0681 -0.3547 1.0137 11 6 4.1316 -0.9785 -1.3923 12 7 5.0973 -2.0371 -1.0148 13 6 5.3282 -2.9639 -2.1310 14 6 6.5049 -2.4658 -2.9724 15 6 6.1064 -1.2248 -3.8046 16 6 6.8272 -1.3975 -5.1212 17 6 7.2381 -2.6268 -5.2744 18 6 6.8592 -3.4792 -4.0856 19 6 4.1311 -2.6025 -0.0473 20 1 -0.4850 0.8401 0.0004 21 1 3.7022 0.5402 1.0281 22 1 3.4728 -1.2580 -2.2145 23 1 4.5845 0.0042 -1.5240 24 1 5.5556 -3.9552 -1.7390 25 1 4.4336 -3.0151 -2.7517 26 1 7.3706 -2.2551 -2.3446 27 1 5.0280 -1.2035 -3.9619 28 1 6.4364 -0.3125 -3.3076 29 1 6.9824 -0.6073 -5.8409 30 1 7.7773 -2.9876 -6.1377 31 1 7.7015 -4.0998 -3.7794 32 1 5.9962 -4.1016 -4.3220 33 1 4.5837 -2.9151 0.8937 34 1 3.4722 -3.3580 -0.4754 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001459996352.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:57 Heat of formation + Delta-G solvation = 13.156065 kcal Electronic energy + Delta-G solvation = -15664.502480 eV Core-core repulsion = 13178.126721 eV Total energy + Delta-G solvation = -2486.375760 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.62869 -38.14752 -34.77550 -32.41820 -30.95698 -28.10972 -27.52330 -25.33437 -25.13081 -21.89980 -19.85741 -18.96027 -18.69151 -17.27100 -16.13064 -16.08587 -15.28049 -14.75615 -14.38252 -13.34298 -13.12081 -12.94747 -12.58658 -12.51564 -12.07701 -12.01361 -11.79674 -11.36419 -11.09584 -10.88140 -10.78761 -10.54646 -10.40428 -10.19983 -9.92296 -9.25643 -8.86444 -8.81893 -8.54353 -7.96988 -6.31734 -4.35729 2.30680 3.08084 3.15951 3.22583 4.14709 4.48962 4.75581 4.80579 4.87589 5.18264 5.32210 5.42823 5.51754 5.61013 5.74500 5.85266 5.86468 5.94666 5.98763 6.08278 6.18010 6.18367 6.30087 6.47929 6.55102 6.58716 6.65806 6.93990 6.96059 7.03468 7.36678 7.80597 8.17002 8.70658 8.72081 9.27955 10.80880 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.038843 B = 0.007768 C = 0.007283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.680963 B = 3603.572557 C = 3843.491307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.077 3.923 3 Si 0.858 3.142 4 H -0.269 1.269 5 H -0.251 1.251 6 H -0.286 1.286 7 C -0.536 4.536 8 H 0.084 0.916 9 C 0.199 3.801 10 O -0.552 6.552 11 C -0.026 4.026 12 N -0.478 5.478 13 C 0.028 3.972 14 C -0.081 4.081 15 C -0.098 4.098 16 C -0.163 4.163 17 C -0.175 4.175 18 C -0.097 4.097 19 C 0.024 3.976 20 H 0.268 0.732 21 H 0.348 0.652 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.043 0.957 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.178 -3.109 -7.897 14.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.127 4.127 3 Si 0.687 3.313 4 H -0.195 1.195 5 H -0.176 1.176 6 H -0.213 1.213 7 C -0.574 4.574 8 H 0.102 0.898 9 C 0.158 3.842 10 O -0.362 6.362 11 C -0.155 4.155 12 N -0.200 5.200 13 C -0.101 4.101 14 C -0.099 4.099 15 C -0.135 4.135 16 C -0.181 4.181 17 C -0.193 4.193 18 C -0.134 4.134 19 C -0.105 4.105 20 H 0.078 0.922 21 H 0.199 0.801 22 H 0.089 0.911 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.061 0.939 26 H 0.102 0.898 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.003 -3.375 -7.562 14.583 hybrid contribution -0.786 1.143 -0.670 1.540 sum 11.218 -2.232 -8.231 14.092 Atomic orbital electron populations 1.69882 1.06140 1.27403 1.48593 1.25012 0.94877 0.99119 0.93696 0.87327 0.80794 0.84119 0.79084 1.19506 1.17615 1.21298 1.21413 0.88627 0.95287 1.52097 0.89761 1.20495 0.91983 0.87946 0.83778 1.86452 1.67461 1.25280 1.57016 1.25101 0.93308 0.96018 1.01062 1.68490 1.34053 1.08048 1.09447 1.22645 0.96826 0.96804 0.93871 1.21951 0.98640 0.94377 0.94973 1.21481 1.00125 0.99001 0.92847 1.23380 0.98832 0.97337 0.98507 1.23229 1.01153 0.95804 0.99145 1.21420 1.00845 0.97824 0.93325 1.23966 0.92882 0.97071 0.96582 0.92159 0.80108 0.91074 0.90946 0.91541 0.93915 0.89805 0.90599 0.91165 0.86353 0.86362 0.91495 0.90850 0.90205 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.93 13.96 55.43 0.77 -25.16 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.86 20.09 24.30 -169.99 -4.13 15.96 16 4 H -0.27 -6.11 7.05 56.52 0.40 -5.71 16 5 H -0.25 -5.59 5.15 56.52 0.29 -5.30 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.54 -14.74 9.19 -34.44 -0.32 -15.05 16 8 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 9 C 0.20 4.80 1.05 -90.84 -0.10 4.70 16 10 O -0.55 -13.78 13.35 -35.23 -0.47 -14.25 16 11 C -0.03 -0.55 5.07 -2.63 -0.01 -0.57 16 12 N -0.48 -9.37 6.15 -238.03 -1.46 -10.84 16 13 C 0.03 0.44 4.27 -3.82 -0.02 0.43 16 14 C -0.08 -1.15 3.37 -88.89 -0.30 -1.45 16 15 C -0.10 -1.40 5.45 -26.83 -0.15 -1.55 16 16 C -0.16 -2.01 10.77 -35.70 -0.38 -2.40 16 17 C -0.18 -2.03 10.78 -35.69 -0.38 -2.41 16 18 C -0.10 -1.16 6.38 -26.82 -0.17 -1.33 16 19 C 0.02 0.49 7.34 -2.76 -0.02 0.47 16 20 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 21 H 0.35 8.32 3.57 45.56 0.16 8.48 16 22 H 0.07 1.52 7.29 -51.93 -0.38 1.14 16 23 H 0.07 1.56 6.82 -51.93 -0.35 1.21 16 24 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 25 H 0.04 0.70 7.17 -51.93 -0.37 0.33 16 26 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.08 1.16 7.14 -51.93 -0.37 0.79 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 30 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.86 7.89 -51.93 -0.41 0.45 16 33 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 34 H 0.07 1.44 7.87 -51.92 -0.41 1.03 16 LS Contribution 267.12 15.07 4.03 4.03 Total: -1.00 -29.11 267.12 -7.97 -37.08 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -4.76 Total: 10.29 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -1.95 Total: -17.11 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.69 Total: -36.00 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.47 Total: -14.25 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.13 Total: 15.96 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.11 -7.97 -37.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459996352.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.238 kcal (2) G-P(sol) polarization free energy of solvation -29.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds