Wall clock time and date at job start Mon Mar 30 2020 03:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47310 * 2 1 4 4 N 1.46901 * 109.46772 * 120.00282 * 2 1 3 5 5 C 1.46900 * 110.99660 * 154.99947 * 4 2 1 6 6 C 1.50700 * 109.47063 * 179.97438 * 5 4 2 7 7 C 1.39870 * 126.04185 * 269.97720 * 6 5 4 8 8 N 1.30839 * 108.19862 * 180.02562 * 7 6 5 9 9 N 1.40079 * 108.20849 * 359.97438 * 8 7 6 10 10 C 1.46502 * 126.03442 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47241 * 304.99894 * 10 9 8 12 12 H 1.08004 * 119.99913 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00183 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99808 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00165 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47329 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47150 * 120.00184 * 15 13 11 18 18 H 1.48504 * 109.47529 * 239.99900 * 15 13 11 19 19 C 1.34948 * 107.92564 * 0.02562 * 9 8 7 20 20 H 1.09007 * 109.47237 * 300.00094 * 1 2 3 21 21 H 1.09003 * 109.47548 * 60.00053 * 1 2 3 22 22 H 1.09005 * 109.47306 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46903 * 239.99891 * 2 1 3 24 24 H 1.08994 * 109.46983 * 180.02562 * 3 2 1 25 25 H 1.09003 * 109.46772 * 300.00422 * 3 2 1 26 26 H 1.09005 * 109.46556 * 59.99947 * 3 2 1 27 27 H 1.00900 * 110.99902 * 278.94890 * 4 2 1 28 28 H 1.08995 * 109.47253 * 59.99540 * 5 4 2 29 29 H 1.09005 * 109.47366 * 300.00067 * 5 4 2 30 30 H 1.07997 * 125.89658 * 359.97438 * 7 6 5 31 31 H 1.08994 * 109.47186 * 64.99894 * 10 9 8 32 32 H 1.09001 * 109.46653 * 185.00231 * 10 9 8 33 33 H 0.97000 * 120.00227 * 180.02562 * 14 13 11 34 34 H 1.08007 * 126.12251 * 180.26869 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 3.3669 -1.2355 0.9806 6 6 3.8349 -1.9366 2.2298 7 6 4.5416 -1.3520 3.2859 8 7 4.7690 -2.2745 4.1855 9 7 4.2129 -3.4767 3.7299 10 6 4.2427 -4.7613 4.4336 11 6 5.6688 -5.1216 4.7614 12 1 6.4726 -4.4597 4.4746 13 6 5.9475 -6.2963 5.4273 14 7 4.9688 -7.1025 5.7761 15 14 7.7152 -6.7425 5.8342 16 1 8.6217 -5.6763 5.3378 17 1 7.8662 -6.8746 7.3056 18 1 8.0628 -8.0313 5.1833 19 6 3.6460 -3.2429 2.5279 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 3.1300 1.4424 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 2.0019 -0.0816 2.0023 28 1 4.0522 -0.4221 0.7425 29 1 3.3430 -1.9445 0.1530 30 1 4.8474 -0.3181 3.3477 31 1 3.6665 -4.6840 5.3556 32 1 3.8097 -5.5338 3.7981 33 1 5.1648 -7.9288 6.2450 34 1 3.1295 -3.9675 1.9157 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040932503.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:39 Heat of formation + Delta-G solvation = 61.362133 kcal Electronic energy + Delta-G solvation = -14666.245382 eV Core-core repulsion = 12214.252745 eV Total energy + Delta-G solvation = -2451.992637 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.33417 -37.23797 -33.75046 -32.33318 -31.15467 -28.94220 -27.21246 -27.11062 -24.12912 -22.97832 -20.84328 -19.99760 -19.44183 -16.53072 -16.08306 -15.45239 -15.08681 -14.46815 -14.07419 -13.99137 -13.43334 -13.25491 -12.62366 -12.50792 -12.34133 -12.17705 -11.75434 -11.52918 -11.48032 -11.28086 -10.94817 -10.89367 -10.80477 -10.24451 -9.82619 -9.53989 -8.67195 -8.45380 -8.27312 -7.57951 -6.23908 -4.28724 2.83544 3.23050 3.30532 3.36783 3.41262 3.67879 4.32741 4.49099 4.83159 5.04795 5.11270 5.22805 5.32535 5.49969 5.55759 5.61202 5.72407 5.74110 5.83031 5.93025 6.06049 6.10021 6.22452 6.31368 6.76747 6.94828 7.07656 7.21268 7.46163 7.56139 7.71473 7.89028 8.06676 8.65040 8.81694 9.37067 10.85244 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.066257 B = 0.004760 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.497293 B = 5881.502154 C = 6099.611697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.075 3.925 3 C -0.183 4.183 4 N -0.682 5.682 5 C 0.148 3.852 6 C -0.269 4.269 7 C 0.019 3.981 8 N -0.284 5.284 9 N -0.327 5.327 10 C 0.255 3.745 11 C -0.528 4.528 12 H 0.069 0.931 13 C 0.062 3.938 14 N -0.895 5.895 15 Si 0.908 3.092 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.282 1.282 19 C 0.069 3.931 20 H 0.052 0.948 21 H 0.051 0.949 22 H 0.061 0.939 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.341 0.659 28 H 0.029 0.971 29 H 0.069 0.931 30 H 0.165 0.835 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.267 0.733 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.990 11.953 -10.820 17.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.035 4.035 3 C -0.242 4.242 4 N -0.313 5.313 5 C 0.019 3.981 6 C -0.282 4.282 7 C -0.166 4.166 8 N -0.107 5.107 9 N -0.107 5.107 10 C 0.137 3.863 11 C -0.566 4.566 12 H 0.087 0.913 13 C -0.141 4.141 14 N -0.534 5.534 15 Si 0.735 3.265 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.208 1.208 19 C -0.082 4.082 20 H 0.071 0.929 21 H 0.070 0.930 22 H 0.080 0.920 23 H 0.092 0.908 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.159 0.841 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.182 0.818 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.806 10.751 -9.638 15.562 hybrid contribution 1.042 0.629 -0.484 1.310 sum -4.764 11.380 -10.121 15.958 Atomic orbital electron populations 1.21764 0.94759 1.02196 1.00962 1.21563 0.95643 0.92169 0.94096 1.22526 1.01336 0.98225 1.02067 1.60716 1.25303 1.40234 1.05070 1.20000 0.87434 0.96345 0.94352 1.19656 1.13708 0.94061 1.00736 1.23525 1.00907 0.98945 0.93186 1.77366 1.19335 0.90779 1.23205 1.49428 1.37960 1.09464 1.13823 1.19722 0.99456 0.74297 0.92790 1.21294 0.91599 1.05644 1.38086 0.91274 1.24950 0.98295 0.95766 0.95103 1.69930 1.31626 1.12153 1.39653 0.86270 0.83726 0.78305 0.78198 1.19538 1.20667 1.20760 1.22253 0.99116 0.97221 0.89649 0.92879 0.92959 0.92038 0.90765 0.92726 0.92444 0.92532 0.84093 0.95292 0.91297 0.81819 0.93733 0.92816 0.92382 0.82042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.52 37.16 0.35 -0.93 16 2 C 0.08 0.76 3.20 -67.71 -0.22 0.54 16 3 C -0.18 -1.59 9.16 37.16 0.34 -1.25 16 4 N -0.68 -8.45 6.24 -107.99 -0.67 -9.12 16 5 C 0.15 1.99 5.96 -4.98 -0.03 1.96 16 6 C -0.27 -4.64 5.61 -105.05 -0.59 -5.23 16 7 C 0.02 0.36 11.96 -17.36 -0.21 0.15 16 8 N -0.28 -6.55 12.41 30.62 0.38 -6.17 16 9 N -0.33 -7.60 3.67 -62.54 -0.23 -7.83 16 10 C 0.25 6.59 6.26 -5.19 -0.03 6.55 16 11 C -0.53 -14.88 9.24 -34.44 -0.32 -15.20 16 12 H 0.07 2.02 7.81 -52.48 -0.41 1.61 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 14 N -0.90 -25.60 13.29 55.43 0.74 -24.87 16 15 Si 0.91 21.54 29.54 -169.99 -5.02 16.52 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 C 0.07 1.34 11.36 -17.22 -0.20 1.14 16 20 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 21 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.74 7.80 -51.93 -0.40 0.34 16 24 H 0.05 0.49 7.45 -51.93 -0.39 0.10 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 27 H 0.34 4.22 8.46 -39.29 -0.33 3.88 16 28 H 0.03 0.36 7.44 -51.93 -0.39 -0.03 16 29 H 0.07 0.90 8.06 -51.93 -0.42 0.48 16 30 H 0.16 2.46 8.06 -52.49 -0.42 2.04 16 31 H 0.04 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.05 1.37 8.07 -51.93 -0.42 0.95 16 33 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.16 2.71 8.06 -52.48 -0.42 2.29 16 LS Contribution 292.55 15.07 4.41 4.41 Total: -1.00 -29.77 292.55 -6.67 -36.44 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.27 Total: 1.26 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -0.99 Total: -10.65 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.21 Total: -47.99 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.77 -6.67 -36.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040932503.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.803 kcal (2) G-P(sol) polarization free energy of solvation -29.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds