Wall clock time and date at job start Mon Mar 30 2020 03:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47310 * 2 1 4 4 N 1.46901 * 109.46772 * 120.00282 * 2 1 3 5 5 C 1.46900 * 110.99660 * 154.99947 * 4 2 1 6 6 C 1.50700 * 109.47063 * 179.97438 * 5 4 2 7 7 C 1.39870 * 126.04185 * 269.97720 * 6 5 4 8 8 N 1.30839 * 108.19862 * 180.02562 * 7 6 5 9 9 N 1.40079 * 108.20849 * 359.97438 * 8 7 6 10 10 C 1.46502 * 126.03442 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47241 * 304.99894 * 10 9 8 12 12 H 1.08004 * 119.99913 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00183 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99808 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00165 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47329 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47150 * 120.00184 * 15 13 11 18 18 H 1.48504 * 109.47529 * 239.99900 * 15 13 11 19 19 C 1.34948 * 107.92564 * 0.02562 * 9 8 7 20 20 H 1.09007 * 109.47237 * 300.00094 * 1 2 3 21 21 H 1.09003 * 109.47548 * 60.00053 * 1 2 3 22 22 H 1.09005 * 109.47306 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46903 * 239.99891 * 2 1 3 24 24 H 1.08994 * 109.46983 * 180.02562 * 3 2 1 25 25 H 1.09003 * 109.46772 * 300.00422 * 3 2 1 26 26 H 1.09005 * 109.46556 * 59.99947 * 3 2 1 27 27 H 1.00900 * 110.99902 * 278.94890 * 4 2 1 28 28 H 1.08995 * 109.47253 * 59.99540 * 5 4 2 29 29 H 1.09005 * 109.47366 * 300.00067 * 5 4 2 30 30 H 1.07997 * 125.89658 * 359.97438 * 7 6 5 31 31 H 1.08994 * 109.47186 * 64.99894 * 10 9 8 32 32 H 1.09001 * 109.46653 * 185.00231 * 10 9 8 33 33 H 0.97000 * 120.00227 * 180.02562 * 14 13 11 34 34 H 1.08007 * 126.12251 * 180.26869 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 3.3669 -1.2355 0.9806 6 6 3.8349 -1.9366 2.2298 7 6 4.5416 -1.3520 3.2859 8 7 4.7690 -2.2745 4.1855 9 7 4.2129 -3.4767 3.7299 10 6 4.2427 -4.7613 4.4336 11 6 5.6688 -5.1216 4.7614 12 1 6.4726 -4.4597 4.4746 13 6 5.9475 -6.2963 5.4273 14 7 4.9688 -7.1025 5.7761 15 14 7.7152 -6.7425 5.8342 16 1 8.6217 -5.6763 5.3378 17 1 7.8662 -6.8746 7.3056 18 1 8.0628 -8.0313 5.1833 19 6 3.6460 -3.2429 2.5279 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 3.1300 1.4424 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 2.0019 -0.0816 2.0023 28 1 4.0522 -0.4221 0.7425 29 1 3.3430 -1.9445 0.1530 30 1 4.8474 -0.3181 3.3477 31 1 3.6665 -4.6840 5.3556 32 1 3.8097 -5.5338 3.7981 33 1 5.1648 -7.9288 6.2450 34 1 3.1295 -3.9675 1.9157 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040932503.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:39 Heat of formation + Delta-G solvation = 41.712618 kcal Electronic energy + Delta-G solvation = -14667.097449 eV Core-core repulsion = 12214.252745 eV Total energy + Delta-G solvation = -2452.844704 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.89927 -38.14761 -35.70171 -33.78593 -32.70725 -30.36837 -28.86472 -27.90135 -25.67886 -24.61928 -21.80549 -21.51441 -20.91651 -18.64392 -17.66971 -16.55715 -16.31707 -16.03084 -15.64530 -15.16271 -14.74342 -14.36257 -14.13020 -13.98166 -13.67123 -13.25777 -13.08608 -12.95562 -12.74815 -12.66829 -12.44133 -12.29695 -12.03244 -11.73824 -11.63858 -11.17122 -10.75569 -10.18653 -9.31458 -9.03470 -8.35297 -6.49636 1.25174 1.36164 1.38123 1.51169 1.97062 2.01270 2.34595 2.96565 3.54514 3.93327 4.10428 4.14640 4.29819 4.47583 4.51639 4.59325 4.66740 4.84067 4.89081 4.93095 5.01912 5.05112 5.16119 5.19859 5.34473 5.36648 5.50474 5.55893 5.79468 5.97635 6.29396 6.34603 6.61619 6.64137 7.09316 7.20950 8.73237 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.066257 B = 0.004760 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.497293 B = 5881.502154 C = 6099.611697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.075 3.925 3 C -0.177 4.177 4 N -0.693 5.693 5 C 0.156 3.844 6 C -0.251 4.251 7 C 0.030 3.970 8 N -0.338 5.338 9 N -0.356 5.356 10 C 0.270 3.730 11 C -0.548 4.548 12 H 0.052 0.948 13 C 0.017 3.983 14 N -0.922 5.922 15 Si 0.974 3.026 16 H -0.274 1.274 17 H -0.273 1.273 18 H -0.268 1.268 19 C 0.055 3.945 20 H 0.050 0.950 21 H 0.069 0.931 22 H 0.049 0.951 23 H 0.077 0.923 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.340 0.660 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.201 0.799 31 H 0.016 0.984 32 H 0.051 0.949 33 H 0.273 0.727 34 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.662 13.113 -12.191 18.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.034 4.034 3 C -0.236 4.236 4 N -0.324 5.324 5 C 0.026 3.974 6 C -0.263 4.263 7 C -0.155 4.155 8 N -0.160 5.160 9 N -0.136 5.136 10 C 0.151 3.849 11 C -0.586 4.586 12 H 0.070 0.930 13 C -0.184 4.184 14 N -0.561 5.561 15 Si 0.798 3.202 16 H -0.198 1.198 17 H -0.198 1.198 18 H -0.193 1.193 19 C -0.094 4.094 20 H 0.069 0.931 21 H 0.088 0.912 22 H 0.068 0.932 23 H 0.095 0.905 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.159 0.841 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.218 0.782 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -5.500 11.927 -11.034 17.153 hybrid contribution 0.864 0.381 -0.133 0.954 sum -4.635 12.307 -11.167 17.253 Atomic orbital electron populations 1.21745 0.94276 1.01677 1.01731 1.21621 0.95962 0.92849 0.93007 1.22456 1.01148 0.97237 1.02758 1.60667 1.24511 1.41099 1.06160 1.19978 0.88389 0.96731 0.92294 1.20061 1.11767 0.93148 1.01365 1.24198 0.99260 0.99763 0.92324 1.77296 1.21568 0.91555 1.25615 1.49146 1.40392 1.08852 1.15240 1.19237 0.97900 0.75897 0.91901 1.21433 0.92269 1.05922 1.38955 0.92985 1.25787 1.02548 0.95439 0.94579 1.70009 1.33602 1.12571 1.39891 0.85259 0.78442 0.78198 0.78266 1.19846 1.19820 1.19309 1.22807 0.98989 0.98872 0.88752 0.93117 0.91204 0.93198 0.90501 0.92898 0.91143 0.92492 0.84132 0.93588 0.90610 0.78212 0.96570 0.93115 0.91807 0.80081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.52 71.98 0.69 -1.55 16 2 C 0.08 1.31 3.20 44.92 0.14 1.45 16 3 C -0.18 -2.55 9.16 71.98 0.66 -1.89 16 4 N -0.69 -15.54 6.24 -495.57 -3.09 -18.64 16 5 C 0.16 3.76 5.96 85.56 0.51 4.27 16 6 C -0.25 -8.25 5.61 -20.14 -0.11 -8.37 16 7 C 0.03 1.07 11.96 85.24 1.02 2.08 16 8 N -0.34 -15.73 12.41 -57.02 -0.71 -16.44 16 9 N -0.36 -16.91 3.67 -351.79 -1.29 -18.20 16 10 C 0.27 14.50 6.26 85.63 0.54 15.04 16 11 C -0.55 -31.73 9.24 25.60 0.24 -31.49 16 12 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 13 C 0.02 0.94 5.46 84.65 0.46 1.40 16 14 N -0.92 -53.35 13.29 21.45 0.28 -53.06 16 15 Si 0.97 44.31 29.54 68.60 2.03 46.33 16 16 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 19 C 0.05 2.11 11.36 83.54 0.95 3.06 16 20 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 21 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 23 H 0.08 1.31 7.80 -2.39 -0.02 1.30 16 24 H 0.05 0.79 7.45 -2.39 -0.02 0.77 16 25 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.06 0.82 8.13 -2.38 -0.02 0.80 16 27 H 0.34 7.66 8.46 -89.69 -0.76 6.90 16 28 H 0.05 0.98 7.44 -2.39 -0.02 0.96 16 29 H 0.08 1.76 8.06 -2.38 -0.02 1.74 16 30 H 0.20 5.45 8.06 -2.91 -0.02 5.43 16 31 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 2.69 8.07 -2.39 -0.02 2.67 16 33 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 34 H 0.18 5.98 8.06 -2.91 -0.02 5.96 16 Total: -1.00 -64.62 292.55 2.62 -62.00 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.31 Total: 13.99 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: 5.09 Total: -15.99 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -4.80 Total: -106.33 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -64.62 2.62 -62.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040932503.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.710 kcal (2) G-P(sol) polarization free energy of solvation -64.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds