Wall clock time and date at job start Mon Mar 30 2020 02:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47039 * 248.05522 * 3 2 1 5 5 C 1.36927 * 119.99901 * 90.70799 * 4 3 2 6 6 H 1.08001 * 119.99902 * 159.08029 * 5 4 3 7 7 C 1.38807 * 120.00427 * 339.08175 * 5 4 3 8 8 N 1.31624 * 119.99854 * 350.17506 * 7 5 4 9 9 Si 1.86807 * 120.00558 * 170.16669 * 7 5 4 10 10 H 1.48499 * 109.47234 * 180.02562 * 9 7 5 11 11 H 1.48494 * 109.46742 * 300.00667 * 9 7 5 12 12 H 1.48505 * 109.46587 * 60.00200 * 9 7 5 13 13 C 1.46500 * 119.99996 * 270.71279 * 4 3 2 14 14 H 1.09007 * 109.47153 * 293.55416 * 13 4 3 15 15 C 1.53002 * 109.47169 * 173.55610 * 13 4 3 16 16 C 1.53002 * 109.46839 * 299.99513 * 15 13 4 17 17 C 1.53000 * 109.47095 * 300.00009 * 16 15 13 18 18 C 1.53002 * 109.47284 * 60.00264 * 17 16 15 19 19 C 1.53000 * 109.47502 * 53.55150 * 13 4 3 20 20 H 1.08996 * 109.47256 * 180.02562 * 19 13 4 21 21 N 1.46903 * 109.46985 * 300.00094 * 19 13 4 22 22 H 1.09000 * 109.46763 * 128.06051 * 3 2 1 23 23 H 1.08997 * 109.47769 * 8.05722 * 3 2 1 24 24 H 0.96997 * 120.00063 * 180.02562 * 8 7 5 25 25 H 1.08999 * 109.47184 * 59.99411 * 15 13 4 26 26 H 1.08996 * 109.47015 * 179.97438 * 15 13 4 27 27 H 1.08998 * 109.46627 * 180.02562 * 16 15 13 28 28 H 1.09001 * 109.46796 * 60.00275 * 16 15 13 29 29 H 1.08996 * 109.47256 * 300.00214 * 17 16 15 30 30 H 1.08998 * 109.47290 * 179.97438 * 17 16 15 31 31 H 1.08993 * 109.47587 * 180.02562 * 18 17 16 32 32 H 1.09001 * 109.47203 * 59.99369 * 18 17 16 33 33 H 1.00903 * 110.99873 * 179.97438 * 21 19 13 34 34 H 1.00895 * 111.00281 * 303.94918 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0961 0.5171 1.2812 5 6 3.3385 -0.3433 2.3185 6 1 3.9958 -0.0477 3.1229 7 6 2.7396 -1.5953 2.3362 8 7 1.7944 -1.8851 1.4672 9 14 3.2749 -2.8692 3.5933 10 1 2.4879 -4.1140 3.4027 11 1 4.7190 -3.1648 3.4142 12 1 3.0436 -2.3415 4.9620 13 6 3.3247 1.9539 1.4525 14 1 4.1487 2.2696 0.8124 15 6 3.6740 2.2441 2.9136 16 6 2.5175 1.8011 3.8120 17 6 1.2507 2.5685 3.4283 18 6 0.9014 2.2783 1.9672 19 6 2.0579 2.7213 1.0688 20 1 2.2282 3.7904 1.1959 21 7 1.7227 2.4427 -0.3341 22 1 2.9710 0.6344 -0.8092 23 1 2.9719 -1.0166 -0.1440 24 1 1.3756 -2.7599 1.4798 25 1 4.5764 1.6974 3.1870 26 1 3.8445 3.3131 3.0410 27 1 2.7661 2.0083 4.8529 28 1 2.3474 0.7320 3.6845 29 1 1.4208 3.6375 3.5557 30 1 0.4267 2.2526 4.0680 31 1 -0.0007 2.8253 1.6937 32 1 0.7313 1.2092 1.8397 33 1 0.8887 2.9381 -0.6118 34 1 2.4961 2.6669 -0.9421 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040988849.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:14 Heat of formation + Delta-G solvation = 62.077218 kcal Electronic energy + Delta-G solvation = -16845.239948 eV Core-core repulsion = 14393.278320 eV Total energy + Delta-G solvation = -2451.961628 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.92000 -34.76464 -33.81794 -32.87923 -31.11923 -29.15883 -27.28318 -26.24921 -23.17501 -21.36399 -20.80740 -18.50453 -17.07029 -15.71499 -15.25718 -14.90018 -14.68728 -13.98489 -13.69283 -13.38717 -12.99829 -12.19102 -11.95368 -11.60805 -11.57980 -11.19096 -11.05500 -10.91313 -10.79139 -10.72518 -10.28442 -10.08225 -9.80951 -9.70773 -9.42315 -9.34747 -9.24779 -8.45130 -7.92993 -6.86809 -5.79495 -3.22528 3.37489 3.43609 3.45437 4.40172 4.75180 5.01858 5.21845 5.30010 5.50046 5.54167 5.76877 5.87263 5.97839 6.03736 6.19620 6.22371 6.26897 6.41180 6.44137 6.51054 6.63385 6.88267 6.97402 7.03038 7.11397 7.35992 7.37650 7.56466 7.74285 7.79020 7.96205 8.32730 9.15961 9.77005 9.91518 10.26864 11.25222 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.026514 B = 0.015061 C = 0.011975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.801440 B = 1858.697149 C = 2337.597820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C 0.307 3.693 3 C 0.283 3.717 4 N -0.575 5.575 5 C -0.251 4.251 6 H 0.082 0.918 7 C 0.001 3.999 8 N -0.903 5.903 9 Si 0.905 3.095 10 H -0.292 1.292 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.180 3.820 14 H 0.029 0.971 15 C -0.103 4.103 16 C -0.137 4.137 17 C -0.106 4.106 18 C -0.112 4.112 19 C 0.078 3.922 20 H 0.016 0.984 21 N -0.832 5.832 22 H 0.052 0.948 23 H 0.089 0.911 24 H 0.258 0.742 25 H 0.066 0.934 26 H 0.043 0.957 27 H 0.037 0.963 28 H 0.118 0.882 29 H 0.038 0.962 30 H 0.048 0.952 31 H 0.033 0.967 32 H 0.104 0.896 33 H 0.330 0.670 34 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.483 8.023 -0.357 9.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.233 5.233 2 C -0.010 4.010 3 C 0.154 3.846 4 N -0.298 5.298 5 C -0.380 4.380 6 H 0.100 0.900 7 C -0.198 4.198 8 N -0.548 5.548 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.210 1.210 12 H -0.211 1.211 13 C 0.073 3.927 14 H 0.047 0.953 15 C -0.142 4.142 16 C -0.174 4.174 17 C -0.145 4.145 18 C -0.150 4.150 19 C -0.035 4.035 20 H 0.033 0.967 21 N -0.361 5.361 22 H 0.070 0.930 23 H 0.107 0.893 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.136 0.864 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.122 0.878 33 H 0.142 0.858 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.687 7.101 -0.124 7.593 hybrid contribution 0.588 0.426 0.685 0.998 sum 3.274 7.526 0.561 8.227 Atomic orbital electron populations 1.80689 1.14671 1.15957 1.11941 1.29373 0.95508 0.86650 0.89459 1.17948 0.81544 0.98562 0.86556 1.43945 1.75681 0.99934 1.10223 1.19210 1.21772 0.94696 1.02292 0.90043 1.24992 0.96883 0.99087 0.98799 1.69663 1.25618 1.21929 1.37566 0.86310 0.77901 0.81155 0.81065 1.21773 1.21009 1.21050 1.20495 0.92598 0.85302 0.94349 0.95327 1.21491 0.99013 0.98418 0.95246 1.21998 0.93634 1.05505 0.96268 1.21389 0.98214 0.98206 0.96645 1.21618 0.95133 1.05070 0.93217 1.21936 0.98057 0.95279 0.88192 0.96662 1.58954 1.08182 1.65610 1.03359 0.93020 0.89295 0.93050 0.91574 0.93859 0.94440 0.86390 0.94322 0.93285 0.94858 0.87759 0.85805 0.85526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -14.24 17.82 42.15 0.75 -13.49 16 2 C 0.31 7.39 8.09 -20.76 -0.17 7.22 16 3 C 0.28 6.19 4.78 -6.82 -0.03 6.16 16 4 N -0.58 -12.51 2.10 -168.97 -0.35 -12.86 16 5 C -0.25 -5.97 6.29 -15.07 -0.09 -6.06 16 6 H 0.08 1.89 5.45 -52.49 -0.29 1.60 16 7 C 0.00 0.02 5.14 -17.43 -0.09 -0.07 16 8 N -0.90 -24.42 8.68 55.49 0.48 -23.93 16 9 Si 0.91 20.67 29.57 -169.99 -5.03 15.65 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.18 3.33 3.05 -67.93 -0.21 3.12 16 14 H 0.03 0.51 8.14 -51.92 -0.42 0.08 16 15 C -0.10 -1.81 4.90 -26.73 -0.13 -1.95 16 16 C -0.14 -2.60 5.37 -26.73 -0.14 -2.74 16 17 C -0.11 -1.96 5.92 -26.73 -0.16 -2.11 16 18 C -0.11 -2.26 5.03 -26.73 -0.13 -2.39 16 19 C 0.08 1.37 2.84 -67.71 -0.19 1.18 16 20 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 21 N -0.83 -13.62 4.76 -4.67 -0.02 -13.64 16 22 H 0.05 0.98 6.64 -51.93 -0.34 0.63 16 23 H 0.09 2.12 6.69 -51.93 -0.35 1.78 16 24 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.07 1.17 6.88 -51.93 -0.36 0.81 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.12 2.69 4.88 -51.93 -0.25 2.43 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.10 2.56 4.72 -51.93 -0.25 2.32 16 33 H 0.33 5.18 9.04 -39.29 -0.36 4.83 16 34 H 0.33 4.62 8.49 -39.29 -0.33 4.29 16 LS Contribution 253.76 15.07 3.82 3.82 Total: -1.00 -27.61 253.76 -6.31 -33.92 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -4.62 Total: 8.17 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -1.35 Total: 2.35 kcal Atomic # 7 Polarization: -64.78 SS G_CDS: 0.86 Total: -63.92 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -27.61 -6.31 -33.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040988849.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.002 kcal (2) G-P(sol) polarization free energy of solvation -27.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds