Wall clock time and date at job start Mon Mar 30 2020 03:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46765 * 2 1 4 4 C 1.53005 * 109.46989 * 240.00461 * 2 1 3 5 5 N 1.46897 * 109.47332 * 120.00372 * 2 1 3 6 6 C 1.46900 * 111.00306 * 59.99996 * 5 2 1 7 7 C 1.50694 * 109.47410 * 180.02562 * 6 5 2 8 8 N 1.30482 * 125.74788 * 90.02359 * 7 6 5 9 9 C 1.34245 * 109.40472 * 180.02562 * 8 7 6 10 10 C 1.34640 * 108.27583 * 0.26391 * 9 8 7 11 11 N 1.36276 * 125.74075 * 270.02315 * 7 6 5 12 12 C 1.37562 * 126.51500 * 0.02562 * 11 7 6 13 13 H 1.08001 * 119.99848 * 17.23669 * 12 11 7 14 14 C 1.38933 * 120.00051 * 197.23161 * 12 11 7 15 15 N 1.31324 * 120.00118 * 9.72233 * 14 12 11 16 16 Si 1.86805 * 120.00107 * 189.71765 * 14 12 11 17 17 H 1.48503 * 109.46874 * 88.17159 * 16 14 12 18 18 H 1.48498 * 109.47504 * 208.17273 * 16 14 12 19 19 H 1.48506 * 109.47003 * 328.17386 * 16 14 12 20 20 H 1.09003 * 109.47071 * 299.99360 * 1 2 3 21 21 H 1.08997 * 109.47508 * 59.99853 * 1 2 3 22 22 H 1.09002 * 109.46778 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46897 * 180.02562 * 3 2 1 24 24 H 1.08997 * 109.47228 * 300.00319 * 3 2 1 25 25 H 1.09003 * 109.46803 * 60.00476 * 3 2 1 26 26 H 1.08998 * 109.46942 * 299.99983 * 4 2 1 27 27 H 1.09003 * 109.46846 * 59.99401 * 4 2 1 28 28 H 1.08997 * 109.46837 * 179.97438 * 4 2 1 29 29 H 1.00896 * 111.00056 * 183.95847 * 5 2 1 30 30 H 1.09003 * 109.46996 * 59.99888 * 6 5 2 31 31 H 1.09002 * 109.47000 * 300.00599 * 6 5 2 32 32 H 1.07999 * 125.86473 * 179.97438 * 9 8 7 33 33 H 1.07999 * 126.58211 * 179.74045 * 10 9 8 34 34 H 0.97003 * 120.00076 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 2.0198 -0.6925 1.1993 6 6 1.5488 -2.0836 1.2333 7 6 2.0694 -2.7601 2.4751 8 7 1.4677 -2.7970 3.6323 9 6 2.2216 -3.4837 4.5054 10 6 3.3394 -3.8868 3.8723 11 7 3.2480 -3.4364 2.5785 12 6 4.1737 -3.6256 1.5787 13 1 4.1488 -3.0048 0.6953 14 6 5.1406 -4.6151 1.7053 15 7 5.0595 -5.4916 2.6799 16 14 6.5561 -4.6990 0.4892 17 1 7.6707 -3.8419 0.9671 18 1 7.0261 -6.1028 0.3726 19 1 6.0968 -4.2189 -0.8389 20 1 -0.3633 0.5137 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1300 1.4426 -0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6766 1.9563 0.8901 26 1 1.6767 -1.7488 -1.2494 27 1 1.6766 -0.2073 -2.1393 28 1 3.1300 -0.7208 -1.2496 29 1 3.0263 -0.6501 1.2558 30 1 1.9123 -2.6118 0.3518 31 1 0.4589 -2.0981 1.2418 32 1 1.9761 -3.6756 5.5394 33 1 4.1507 -4.4577 4.2993 34 1 5.7348 -6.1823 2.7686 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051015513.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:18 Heat of formation + Delta-G solvation = 46.420021 kcal Electronic energy + Delta-G solvation = -15634.193303 eV Core-core repulsion = 13181.552728 eV Total energy + Delta-G solvation = -2452.640575 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.31229 -37.85847 -33.93562 -31.93559 -30.75054 -27.85866 -27.21102 -27.07818 -25.31172 -23.87845 -20.19867 -18.97425 -18.89557 -17.48352 -15.68182 -15.19038 -14.78698 -14.48496 -13.92701 -13.57458 -13.39847 -12.84079 -12.42323 -12.18181 -11.99972 -11.87201 -11.69824 -11.58889 -11.35957 -11.25997 -10.97830 -10.80861 -10.71657 -10.63385 -10.39809 -9.66386 -8.40480 -8.28384 -7.87980 -6.92290 -6.66149 -4.50431 2.89287 2.98645 3.02079 3.66304 3.78923 4.40866 4.75933 4.98786 5.04204 5.10536 5.19893 5.43642 5.66598 5.72322 5.80592 5.93740 5.99507 6.06078 6.07897 6.17169 6.24609 6.42123 6.49399 6.56899 6.82275 6.92844 7.08133 7.42796 7.56494 7.57783 7.90173 8.25721 8.41798 8.78213 9.46869 9.79250 10.24238 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.024299 B = 0.009837 C = 0.007460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.022896 B = 2845.815735 C = 3752.273957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.103 3.897 3 C -0.136 4.136 4 C -0.183 4.183 5 N -0.671 5.671 6 C 0.167 3.833 7 C 0.103 3.897 8 N -0.501 5.501 9 C -0.099 4.099 10 C -0.039 4.039 11 N -0.263 5.263 12 C -0.344 4.344 13 H 0.104 0.896 14 C 0.048 3.952 15 N -0.838 5.838 16 Si 0.937 3.063 17 H -0.269 1.269 18 H -0.277 1.277 19 H -0.265 1.265 20 H 0.063 0.937 21 H 0.052 0.948 22 H 0.056 0.944 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.341 0.659 30 H 0.039 0.961 31 H 0.083 0.917 32 H 0.141 0.859 33 H 0.170 0.830 34 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.493 6.668 -6.863 9.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.011 3.989 3 C -0.194 4.194 4 C -0.242 4.242 5 N -0.303 5.303 6 C 0.037 3.963 7 C -0.154 4.154 8 N -0.222 5.222 9 C -0.252 4.252 10 C -0.182 4.182 11 N 0.070 4.930 12 C -0.473 4.473 13 H 0.122 0.878 14 C -0.163 4.163 15 N -0.469 5.469 16 Si 0.761 3.239 17 H -0.195 1.195 18 H -0.202 1.202 19 H -0.190 1.190 20 H 0.082 0.918 21 H 0.071 0.929 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.159 0.841 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.159 0.841 33 H 0.187 0.813 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.570 7.064 -6.396 9.870 hybrid contribution 2.196 -1.131 -1.276 2.780 sum -0.375 5.934 -7.671 9.706 Atomic orbital electron populations 1.21861 0.94127 1.02065 1.01473 1.20941 0.95496 0.94020 0.88409 1.21798 1.00777 0.95121 1.01667 1.22593 1.01356 1.01464 0.98821 1.60719 1.16416 1.15322 1.37820 1.19810 0.99343 0.86080 0.91076 1.22464 0.87824 1.08598 0.96497 1.69776 1.31336 1.21044 1.00038 1.21726 0.95646 1.08599 0.99183 1.22745 1.02503 1.08432 0.84533 1.41542 1.12299 1.31371 1.07740 1.19793 1.08655 1.18809 1.00065 0.87812 1.25519 0.99123 0.93800 0.97819 1.69898 1.33412 1.13360 1.30258 0.85777 0.80075 0.78195 0.79819 1.19473 1.20172 1.18963 0.91803 0.92940 0.92477 0.92948 0.92646 0.91870 0.92105 0.92609 0.92691 0.84080 0.94299 0.89846 0.84119 0.81292 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.24 37.16 0.31 -1.54 16 2 C 0.10 1.48 0.97 -131.60 -0.13 1.35 16 3 C -0.14 -1.70 8.73 37.16 0.32 -1.38 16 4 C -0.18 -2.50 8.23 37.16 0.31 -2.19 16 5 N -0.67 -12.23 6.08 -101.22 -0.62 -12.85 16 6 C 0.17 3.43 5.12 -4.98 -0.03 3.40 16 7 C 0.10 2.61 7.42 -154.30 -1.14 1.47 16 8 N -0.50 -13.26 11.24 -10.52 -0.12 -13.37 16 9 C -0.10 -2.55 11.85 -17.77 -0.21 -2.76 16 10 C -0.04 -1.04 10.20 -16.38 -0.17 -1.21 16 11 N -0.26 -7.04 2.92 -58.87 -0.17 -7.21 16 12 C -0.34 -8.86 9.71 -14.72 -0.14 -9.01 16 13 H 0.10 2.50 7.46 -52.49 -0.39 2.11 16 14 C 0.05 1.19 5.39 -17.51 -0.09 1.10 16 15 N -0.84 -21.80 10.82 55.49 0.60 -21.20 16 16 Si 0.94 18.77 29.56 -169.99 -5.03 13.74 16 17 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 18 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 19 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 20 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.80 6.41 -51.93 -0.33 0.47 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.89 6.40 -51.93 -0.33 0.55 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.34 6.50 8.71 -39.29 -0.34 6.15 16 30 H 0.04 0.79 5.79 -51.93 -0.30 0.49 16 31 H 0.08 1.66 6.30 -51.93 -0.33 1.34 16 32 H 0.14 3.17 8.06 -52.49 -0.42 2.75 16 33 H 0.17 4.55 6.36 -52.49 -0.33 4.21 16 34 H 0.28 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 278.60 15.07 4.20 4.20 Total: -1.00 -28.85 278.60 -6.99 -35.84 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -4.88 Total: 11.62 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -0.98 Total: -10.77 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.31 Total: -54.63 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.85 -6.99 -35.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051015513.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.258 kcal (2) G-P(sol) polarization free energy of solvation -28.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds