Wall clock time and date at job start Mon Mar 30 2020 02:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 120.00220 * 2 1 4 4 H 1.48501 * 109.47266 * 270.00397 * 3 2 1 5 5 H 1.48510 * 109.46870 * 30.00126 * 3 2 1 6 6 H 1.48501 * 109.47127 * 149.99760 * 3 2 1 7 7 C 1.37880 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00080 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99585 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.46537 * 179.97438 * 9 7 2 11 11 C 1.37480 * 120.00087 * 90.00215 * 10 9 7 12 12 N 1.30343 * 120.00038 * 216.68490 * 11 10 9 13 13 N 1.37490 * 120.00009 * 36.68725 * 11 10 9 14 14 C 1.46503 * 119.99835 * 185.48338 * 13 11 10 15 15 C 1.53004 * 117.49500 * 223.62089 * 14 13 11 16 16 C 1.52993 * 117.49501 * 155.00077 * 14 13 11 17 17 C 1.46505 * 120.00198 * 269.99687 * 10 9 7 18 18 C 1.53000 * 117.50129 * 194.26805 * 17 10 9 19 19 C 1.53000 * 117.49805 * 125.64425 * 17 10 9 20 20 H 0.97007 * 119.99800 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.47442 * 60.00413 * 9 7 2 22 22 H 1.09001 * 109.47182 * 299.99746 * 9 7 2 23 23 H 0.97005 * 120.00210 * 179.97438 * 12 11 10 24 24 H 0.97002 * 119.99676 * 5.48026 * 13 11 10 25 25 H 1.08997 * 115.54909 * 9.32905 * 14 13 11 26 26 H 1.08994 * 117.49683 * 359.97438 * 15 14 13 27 27 H 1.08994 * 117.49365 * 145.02328 * 15 14 13 28 28 H 1.09005 * 117.49995 * 214.97626 * 16 14 13 29 29 H 1.09000 * 117.50569 * 359.97438 * 16 14 13 30 30 H 1.08998 * 115.54778 * 339.97924 * 17 10 9 31 31 H 1.09002 * 117.49709 * 0.02562 * 18 17 10 32 32 H 1.08998 * 117.49955 * 145.02226 * 18 17 10 33 33 H 1.08997 * 117.50093 * 214.98321 * 19 17 10 34 34 H 1.09000 * 117.49853 * 359.97438 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 4.2285 -3.2236 -1.1915 12 7 3.9625 -4.4948 -1.3030 13 7 4.7378 -2.5312 -2.2646 14 6 4.8690 -3.1906 -3.5663 15 6 6.1652 -2.9621 -4.3464 16 6 4.8658 -2.3020 -4.8117 17 6 4.2445 -3.2656 1.2678 18 6 5.0572 -4.5611 1.2219 19 6 3.5508 -4.6119 1.4847 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6805 0.8888 22 1 3.8745 -0.6800 -0.8912 23 1 4.1235 -4.9522 -2.1431 24 1 5.0101 -1.6061 -2.1598 25 1 4.3992 -4.1709 -3.6462 26 1 6.9201 -2.3210 -3.8913 27 1 6.5485 -3.7923 -4.9396 28 1 4.3942 -2.6979 -5.7113 29 1 4.7656 -1.2269 -4.6628 30 1 4.3740 -2.6204 2.1367 31 1 5.4102 -4.8996 0.2478 32 1 5.7217 -4.7684 2.0607 33 1 3.2242 -4.8526 2.4964 34 1 2.9120 -4.9838 0.6837 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052039621.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:40 Heat of formation + Delta-G solvation = 107.420639 kcal Electronic energy + Delta-G solvation = -15498.461968 eV Core-core repulsion = 13048.466577 eV Total energy + Delta-G solvation = -2449.995390 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.94336 -37.31111 -34.63344 -33.32918 -31.63980 -30.06341 -27.32913 -23.10556 -22.36124 -22.10358 -21.56783 -20.86448 -18.77488 -17.09995 -16.83110 -16.18110 -15.46232 -14.57700 -14.31198 -14.16328 -13.63897 -12.64744 -12.62561 -12.16796 -12.13073 -11.63854 -11.57090 -11.33539 -10.89411 -10.70179 -10.59857 -10.44834 -9.99135 -9.85362 -9.60482 -9.41243 -8.68076 -8.62699 -7.69569 -6.89016 -6.10963 -4.10141 3.20218 3.25263 3.27665 3.32504 3.42735 4.03653 4.27827 4.33135 4.74825 4.85267 4.95695 5.01745 5.18127 5.54698 5.61387 5.65758 5.75219 5.84666 5.92006 6.08206 6.26111 6.28594 6.43357 6.63289 6.73198 6.88535 7.13355 7.22930 7.55020 7.58160 8.02413 8.50344 8.75188 9.01288 9.37507 9.50840 11.02418 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.018830 B = 0.010923 C = 0.007836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.658905 B = 2562.742328 C = 3572.196603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.872 3.128 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.530 4.530 8 H 0.080 0.920 9 C 0.235 3.765 10 N -0.582 5.582 11 C 0.659 3.341 12 N -0.819 5.819 13 N -0.742 5.742 14 C 0.100 3.900 15 C -0.199 4.199 16 C -0.193 4.193 17 C 0.118 3.882 18 C -0.196 4.196 19 C -0.182 4.182 20 H 0.264 0.736 21 H 0.031 0.969 22 H 0.016 0.984 23 H 0.321 0.679 24 H 0.392 0.608 25 H 0.126 0.874 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.118 0.882 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.079 -3.746 -4.486 13.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.131 4.131 3 Si 0.699 3.301 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.569 4.569 8 H 0.098 0.902 9 C 0.114 3.886 10 N -0.304 5.304 11 C 0.294 3.706 12 N -0.466 5.466 13 N -0.385 5.385 14 C -0.009 4.009 15 C -0.239 4.239 16 C -0.232 4.232 17 C 0.011 3.989 18 C -0.234 4.234 19 C -0.221 4.221 20 H 0.074 0.926 21 H 0.049 0.951 22 H 0.034 0.966 23 H 0.137 0.863 24 H 0.226 0.774 25 H 0.143 0.857 26 H 0.112 0.888 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.135 0.865 31 H 0.123 0.877 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 11.488 -4.312 -3.792 12.843 hybrid contribution 0.651 1.731 -1.020 2.112 sum 12.139 -2.581 -4.812 13.311 Atomic orbital electron populations 1.69908 1.06187 1.26848 1.50365 1.24911 0.94744 0.98748 0.94737 0.86932 0.80414 0.84211 0.78580 1.20208 1.20951 1.18986 1.21545 0.89500 0.94998 1.50894 0.90173 1.19525 0.95485 0.77179 0.96425 1.45222 1.71088 1.14394 0.99652 1.18666 0.84872 0.86210 0.80814 1.70126 1.39033 1.06127 1.31280 1.45172 1.69590 1.15866 1.07848 1.21211 1.00134 0.97943 0.81640 1.23437 0.92100 1.03837 1.04480 1.23360 1.01122 0.99935 0.98792 1.21152 1.03515 0.87450 0.86742 1.23282 0.94961 1.02347 1.02830 1.23358 0.94860 1.02160 1.01766 0.92595 0.95103 0.96589 0.86258 0.77361 0.85656 0.88800 0.88442 0.88213 0.88518 0.86477 0.87722 0.90265 0.90471 0.86698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.21 13.96 55.43 0.77 -26.43 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.87 20.47 27.47 -169.99 -4.67 15.80 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.27 -5.84 6.54 56.52 0.37 -5.47 16 7 C -0.53 -14.90 9.94 -34.44 -0.34 -15.24 16 8 H 0.08 2.58 8.06 -52.49 -0.42 2.16 16 9 C 0.24 5.44 4.47 -5.19 -0.02 5.42 16 10 N -0.58 -12.31 2.89 -169.20 -0.49 -12.80 16 11 C 0.66 13.12 7.33 -320.08 -2.35 10.78 16 12 N -0.82 -16.10 9.77 30.15 0.29 -15.81 16 13 N -0.74 -12.57 5.45 -55.28 -0.30 -12.88 16 14 C 0.10 1.38 6.33 -67.93 -0.43 0.95 16 15 C -0.20 -2.19 10.46 -26.73 -0.28 -2.47 16 16 C -0.19 -2.28 10.45 -26.73 -0.28 -2.56 16 17 C 0.12 2.25 6.62 -67.93 -0.45 1.80 16 18 C -0.20 -3.30 9.63 -26.73 -0.26 -3.56 16 19 C -0.18 -3.39 9.86 -26.73 -0.26 -3.66 16 20 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 21 H 0.03 0.70 7.09 -51.93 -0.37 0.33 16 22 H 0.02 0.36 5.95 -51.93 -0.31 0.05 16 23 H 0.32 5.66 6.43 -40.82 -0.26 5.40 16 24 H 0.39 6.46 7.46 -40.82 -0.30 6.16 16 25 H 0.13 1.70 6.22 -51.93 -0.32 1.38 16 26 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.12 2.06 8.10 -51.93 -0.42 1.64 16 31 H 0.10 1.90 6.10 -51.93 -0.32 1.58 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.11 2.45 6.83 -51.93 -0.35 2.10 16 LS Contribution 280.25 15.07 4.22 4.22 Total: -1.00 -30.53 280.25 -9.72 -40.26 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -4.79 Total: 14.28 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -4.77 Total: -6.63 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: 0.28 Total: -67.92 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.67 Total: 15.80 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.53 -9.72 -40.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052039621.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.677 kcal (2) G-P(sol) polarization free energy of solvation -30.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds