Wall clock time and date at job start Mon Mar 30 2020 02:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 120.00220 * 2 1 4 4 H 1.48501 * 109.47266 * 270.00397 * 3 2 1 5 5 H 1.48510 * 109.46870 * 30.00126 * 3 2 1 6 6 H 1.48501 * 109.47127 * 149.99760 * 3 2 1 7 7 C 1.37880 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00080 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99585 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.46537 * 179.97438 * 9 7 2 11 11 C 1.37480 * 120.00087 * 90.00215 * 10 9 7 12 12 N 1.30343 * 120.00038 * 216.68490 * 11 10 9 13 13 N 1.37490 * 120.00009 * 36.68725 * 11 10 9 14 14 C 1.46503 * 119.99835 * 185.48338 * 13 11 10 15 15 C 1.53004 * 117.49500 * 223.62089 * 14 13 11 16 16 C 1.52993 * 117.49501 * 155.00077 * 14 13 11 17 17 C 1.46505 * 120.00198 * 269.99687 * 10 9 7 18 18 C 1.53000 * 117.50129 * 194.26805 * 17 10 9 19 19 C 1.53000 * 117.49805 * 125.64425 * 17 10 9 20 20 H 0.97007 * 119.99800 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.47442 * 60.00413 * 9 7 2 22 22 H 1.09001 * 109.47182 * 299.99746 * 9 7 2 23 23 H 0.97005 * 120.00210 * 179.97438 * 12 11 10 24 24 H 0.97002 * 119.99676 * 5.48026 * 13 11 10 25 25 H 1.08997 * 115.54909 * 9.32905 * 14 13 11 26 26 H 1.08994 * 117.49683 * 359.97438 * 15 14 13 27 27 H 1.08994 * 117.49365 * 145.02328 * 15 14 13 28 28 H 1.09005 * 117.49995 * 214.97626 * 16 14 13 29 29 H 1.09000 * 117.50569 * 359.97438 * 16 14 13 30 30 H 1.08998 * 115.54778 * 339.97924 * 17 10 9 31 31 H 1.09002 * 117.49709 * 0.02562 * 18 17 10 32 32 H 1.08998 * 117.49955 * 145.02226 * 18 17 10 33 33 H 1.08997 * 117.50093 * 214.98321 * 19 17 10 34 34 H 1.09000 * 117.49853 * 359.97438 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 4.2285 -3.2236 -1.1915 12 7 3.9625 -4.4948 -1.3030 13 7 4.7378 -2.5312 -2.2646 14 6 4.8690 -3.1906 -3.5663 15 6 6.1652 -2.9621 -4.3464 16 6 4.8658 -2.3020 -4.8117 17 6 4.2445 -3.2656 1.2678 18 6 5.0572 -4.5611 1.2219 19 6 3.5508 -4.6119 1.4847 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6805 0.8888 22 1 3.8745 -0.6800 -0.8912 23 1 4.1235 -4.9522 -2.1431 24 1 5.0101 -1.6061 -2.1598 25 1 4.3992 -4.1709 -3.6462 26 1 6.9201 -2.3210 -3.8913 27 1 6.5485 -3.7923 -4.9396 28 1 4.3942 -2.6979 -5.7113 29 1 4.7656 -1.2269 -4.6628 30 1 4.3740 -2.6204 2.1367 31 1 5.4102 -4.8996 0.2478 32 1 5.7217 -4.7684 2.0607 33 1 3.2242 -4.8526 2.4964 34 1 2.9120 -4.9838 0.6837 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052039621.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:40 Heat of formation + Delta-G solvation = 89.416379 kcal Electronic energy + Delta-G solvation = -15499.242691 eV Core-core repulsion = 13048.466577 eV Total energy + Delta-G solvation = -2450.776113 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.34975 -38.52762 -36.01035 -35.22151 -33.50192 -31.43986 -29.26749 -24.57577 -23.95103 -23.25404 -22.99210 -22.10652 -20.18569 -19.03648 -18.54781 -17.55161 -16.88547 -16.24069 -15.79443 -15.47978 -15.10811 -14.53899 -13.91775 -13.76415 -13.50655 -13.27613 -13.10554 -12.52533 -12.42804 -12.34653 -12.16564 -11.76450 -11.48846 -11.41097 -11.17406 -11.03861 -10.78825 -10.15146 -9.02087 -8.49306 -8.27972 -6.35024 1.37026 1.39846 1.50139 1.87834 2.01670 2.34377 2.85364 3.00892 3.05532 3.32362 3.82271 3.96532 4.09248 4.13185 4.24284 4.40785 4.68680 4.73489 4.75707 4.80458 4.94884 4.97779 5.00611 5.09505 5.21375 5.44670 5.49252 5.66353 5.85166 5.99580 6.34117 6.56987 6.72223 7.24367 7.31059 7.93558 8.89166 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.018830 B = 0.010923 C = 0.007836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.658905 B = 2562.742328 C = 3572.196603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.234 1.234 7 C -0.537 4.537 8 H 0.018 0.982 9 C 0.245 3.755 10 N -0.593 5.593 11 C 0.647 3.353 12 N -0.834 5.834 13 N -0.740 5.740 14 C 0.064 3.936 15 C -0.171 4.171 16 C -0.188 4.188 17 C 0.094 3.906 18 C -0.163 4.163 19 C -0.196 4.196 20 H 0.266 0.734 21 H 0.047 0.953 22 H 0.033 0.967 23 H 0.329 0.671 24 H 0.394 0.606 25 H 0.121 0.879 26 H 0.098 0.902 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.092 0.908 30 H 0.133 0.867 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.917 -2.629 -4.859 15.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.190 4.190 3 Si 0.775 3.225 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.157 1.157 7 C -0.577 4.577 8 H 0.036 0.964 9 C 0.123 3.877 10 N -0.315 5.315 11 C 0.282 3.718 12 N -0.482 5.482 13 N -0.382 5.382 14 C -0.043 4.043 15 C -0.210 4.210 16 C -0.227 4.227 17 C -0.011 4.011 18 C -0.201 4.201 19 C -0.235 4.235 20 H 0.075 0.925 21 H 0.064 0.936 22 H 0.051 0.949 23 H 0.146 0.854 24 H 0.229 0.771 25 H 0.139 0.861 26 H 0.117 0.883 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.111 0.889 30 H 0.150 0.850 31 H 0.111 0.889 32 H 0.131 0.869 33 H 0.113 0.887 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 14.363 -3.231 -4.196 15.309 hybrid contribution -0.320 1.252 -0.951 1.604 sum 14.044 -1.979 -5.147 15.087 Atomic orbital electron populations 1.70101 1.08645 1.28231 1.52076 1.25971 0.95617 1.03549 0.93890 0.85653 0.79816 0.77644 0.79426 1.18947 1.21067 1.15667 1.21728 0.92294 0.92745 1.50892 0.96394 1.19295 0.91903 0.78937 0.97593 1.45225 1.71461 1.13979 1.00854 1.18779 0.85140 0.86654 0.81225 1.70108 1.39357 1.06635 1.32139 1.45147 1.69003 1.15884 1.08212 1.21470 1.03418 0.98345 0.81070 1.23476 0.91047 1.03929 1.02513 1.23439 1.01805 0.99449 0.97973 1.21509 1.04802 0.88135 0.86683 1.23238 0.93887 0.99630 1.03390 1.23280 0.96082 1.02586 1.01587 0.92461 0.93556 0.94934 0.85404 0.77145 0.86116 0.88331 0.86254 0.86714 0.88922 0.84954 0.88925 0.86852 0.88703 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.64 13.96 21.45 0.30 -59.34 16 2 C 0.01 0.41 5.47 84.66 0.46 0.87 16 3 Si 0.95 41.49 27.47 68.60 1.88 43.37 16 4 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.23 -8.95 6.54 99.48 0.65 -8.30 16 7 C -0.54 -30.97 9.94 25.60 0.25 -30.72 16 8 H 0.02 1.21 8.06 -2.91 -0.02 1.19 16 9 C 0.25 11.11 4.47 85.63 0.38 11.50 16 10 N -0.59 -24.95 2.89 -689.22 -1.99 -26.94 16 11 C 0.65 25.76 7.33 260.53 1.91 27.67 16 12 N -0.83 -33.34 9.77 -58.53 -0.57 -33.91 16 13 N -0.74 -24.41 5.45 -328.82 -1.79 -26.21 16 14 C 0.06 1.70 6.33 44.99 0.28 1.98 16 15 C -0.17 -3.25 10.46 30.60 0.32 -2.93 16 16 C -0.19 -4.03 10.45 30.59 0.32 -3.71 16 17 C 0.09 3.52 6.62 44.99 0.30 3.82 16 18 C -0.16 -5.24 9.63 30.59 0.29 -4.94 16 19 C -0.20 -7.33 9.86 30.59 0.30 -7.03 16 20 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 21 H 0.05 1.97 7.09 -2.39 -0.02 1.96 16 22 H 0.03 1.38 5.95 -2.39 -0.01 1.36 16 23 H 0.33 11.76 6.43 -92.70 -0.60 11.17 16 24 H 0.39 12.38 7.46 -92.71 -0.69 11.69 16 25 H 0.12 3.24 6.22 -2.39 -0.01 3.22 16 26 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.11 2.10 8.14 -2.38 -0.02 2.08 16 29 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.13 4.44 8.10 -2.39 -0.02 4.42 16 31 H 0.09 3.25 6.10 -2.39 -0.01 3.23 16 32 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 33 H 0.09 3.12 8.14 -2.39 -0.02 3.11 16 34 H 0.08 3.60 6.83 -2.39 -0.02 3.59 16 Total: -1.00 -68.98 280.25 2.43 -66.56 By element: Atomic # 1 Polarization: 40.21 SS G_CDS: -0.23 Total: 39.98 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 4.83 Total: -3.50 kcal Atomic # 7 Polarization: -142.34 SS G_CDS: -4.06 Total: -146.40 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 1.88 Total: 43.37 kcal Total: -68.98 2.43 -66.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052039621.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.971 kcal (2) G-P(sol) polarization free energy of solvation -68.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds