Wall clock time and date at job start Mon Mar 30 2020 03:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46722 * 2 1 4 4 H 1.09004 * 109.46958 * 185.18302 * 3 2 1 5 5 C 1.50699 * 109.46950 * 305.17851 * 3 2 1 6 6 H 1.08004 * 119.99492 * 120.00126 * 5 3 2 7 7 C 1.37871 * 120.00456 * 300.00389 * 5 3 2 8 8 N 1.31515 * 120.00464 * 180.02562 * 7 5 3 9 9 Si 1.86809 * 119.99663 * 359.97438 * 7 5 3 10 10 H 1.48491 * 109.47007 * 90.00278 * 9 7 5 11 11 H 1.48501 * 109.46982 * 210.00125 * 9 7 5 12 12 H 1.48490 * 109.46992 * 329.99881 * 9 7 5 13 13 N 1.46893 * 109.47210 * 65.18303 * 3 2 1 14 14 C 1.46901 * 111.00557 * 85.93305 * 13 3 2 15 15 C 1.50695 * 109.47564 * 174.79490 * 14 13 3 16 16 N 1.34123 * 125.99197 * 269.69014 * 15 14 13 17 17 C 1.30505 * 109.25984 * 179.88103 * 16 15 14 18 18 N 1.35048 * 108.69380 * 0.38667 * 17 16 15 19 19 H 0.97000 * 126.39150 * 179.77062 * 18 17 16 20 20 C 1.34671 * 125.98703 * 90.00436 * 15 14 13 21 21 C 1.50697 * 126.59270 * 359.97438 * 20 15 14 22 22 H 1.09000 * 109.47267 * 294.85717 * 1 2 3 23 23 H 1.09003 * 109.47003 * 174.86015 * 1 2 3 24 24 H 1.08998 * 109.47367 * 54.86148 * 1 2 3 25 25 H 1.08994 * 109.47087 * 119.99440 * 2 1 3 26 26 H 1.08998 * 109.47323 * 240.00068 * 2 1 3 27 27 H 0.96997 * 120.00186 * 179.97438 * 8 7 5 28 28 H 1.00901 * 110.99932 * 321.97966 * 13 3 2 29 29 H 1.08998 * 109.46976 * 294.80243 * 14 13 3 30 30 H 1.09004 * 109.46501 * 54.79613 * 14 13 3 31 31 H 1.07991 * 125.65142 * 180.15144 * 17 16 15 32 32 H 1.08992 * 109.47163 * 90.00340 * 21 20 15 33 33 H 1.08999 * 109.46960 * 210.00379 * 21 20 15 34 34 H 1.08998 * 109.47238 * 330.00277 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1260 1.4441 -0.0928 5 6 1.4355 2.1890 -1.1613 6 1 0.8264 3.0629 -0.9833 7 6 1.6601 1.7563 -2.4510 8 7 1.1331 2.4080 -3.4645 9 14 2.7143 0.2451 -2.7588 10 1 1.8540 -0.9652 -2.7672 11 1 3.3966 0.3765 -4.0712 12 1 3.7303 0.1229 -1.6828 13 7 1.6551 2.0980 1.2570 14 6 2.6443 1.8372 2.3112 15 6 2.2849 2.6262 3.5438 16 7 2.7012 3.8677 3.8341 17 6 2.1919 4.2361 4.9778 18 7 1.4348 3.2269 5.4596 19 1 0.9411 3.2257 6.2946 20 6 1.4942 2.2060 4.5497 21 6 0.8070 0.8689 4.6536 22 1 -0.3634 0.4320 0.9324 23 1 -0.3633 -1.0236 -0.0921 24 1 -0.3634 0.5915 -0.8404 25 1 1.8933 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.2915 2.1037 -4.3718 28 1 0.7327 1.8098 1.5475 29 1 2.6497 0.7736 2.5493 30 1 3.6331 2.1367 1.9636 31 1 2.3526 5.1885 5.4609 32 1 1.4619 0.1625 5.1634 33 1 -0.1186 0.9791 5.2186 34 1 0.5805 0.4981 3.6540 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054797608.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:57 Heat of formation + Delta-G solvation = 57.426258 kcal Electronic energy + Delta-G solvation = -15445.070512 eV Core-core repulsion = 12992.907203 eV Total energy + Delta-G solvation = -2452.163309 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.87688 -36.80902 -33.22623 -32.57306 -31.66463 -30.37832 -27.38403 -26.18467 -23.95639 -23.11536 -21.49211 -19.51445 -19.29738 -17.66203 -16.26956 -15.31115 -14.93042 -14.85615 -14.38574 -13.50075 -13.22835 -13.05236 -12.82789 -12.62674 -12.51167 -12.39783 -12.24988 -11.61882 -10.97296 -10.70327 -10.50092 -10.36588 -9.83241 -9.69858 -9.63157 -9.30174 -9.04357 -8.45331 -8.05978 -7.24523 -5.95253 -3.90263 2.15578 3.21537 3.32076 3.35478 3.42406 3.44467 4.48900 4.74493 4.99633 5.11960 5.33666 5.35719 5.46732 5.52175 5.69055 5.81999 5.97678 6.05329 6.10107 6.21253 6.35359 6.37100 6.58740 6.84177 6.87537 6.96574 7.09061 7.33361 7.51067 7.82674 8.03996 8.33063 8.47872 8.81507 9.17719 9.67998 11.18394 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.041592 B = 0.007201 C = 0.006747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.042984 B = 3887.614165 C = 4148.990270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.159 4.159 3 C 0.186 3.814 4 H 0.034 0.966 5 C -0.486 4.486 6 H 0.081 0.919 7 C 0.068 3.932 8 N -0.903 5.903 9 Si 0.880 3.120 10 H -0.280 1.280 11 H -0.298 1.298 12 H -0.269 1.269 13 N -0.663 5.663 14 C 0.137 3.863 15 C 0.030 3.970 16 N -0.473 5.473 17 C 0.174 3.826 18 N -0.573 5.573 19 H 0.414 0.586 20 C -0.034 4.034 21 C -0.075 4.075 22 H 0.039 0.961 23 H 0.029 0.971 24 H 0.081 0.919 25 H 0.033 0.967 26 H 0.049 0.951 27 H 0.262 0.738 28 H 0.329 0.671 29 H 0.029 0.971 30 H 0.078 0.922 31 H 0.204 0.796 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.559 -3.574 18.106 18.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.198 4.198 3 C 0.076 3.924 4 H 0.052 0.948 5 C -0.525 4.525 6 H 0.099 0.901 7 C -0.133 4.133 8 N -0.542 5.542 9 Si 0.711 3.289 10 H -0.207 1.207 11 H -0.225 1.225 12 H -0.195 1.195 13 N -0.294 5.294 14 C 0.007 3.993 15 C -0.100 4.100 16 N -0.191 5.191 17 C -0.110 4.110 18 N -0.177 5.177 19 H 0.251 0.749 20 C -0.149 4.149 21 C -0.133 4.133 22 H 0.058 0.942 23 H 0.049 0.951 24 H 0.100 0.900 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.148 0.852 29 H 0.047 0.953 30 H 0.097 0.903 31 H 0.221 0.779 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.263 -2.477 17.175 17.354 hybrid contribution -0.413 -2.143 0.911 2.365 sum -0.149 -4.620 18.086 18.667 Atomic orbital electron populations 1.21651 0.95856 0.99499 1.02472 1.22514 0.97213 1.01168 0.98912 1.19727 0.96087 0.88053 0.88485 0.94798 1.20921 1.30882 1.12585 0.88078 0.90061 1.24892 0.95594 0.96645 0.96156 1.69886 1.45279 1.40305 0.98744 0.86971 0.81215 0.83857 0.76850 1.20738 1.22518 1.19453 1.60544 1.03604 1.62792 1.02413 1.20149 0.97822 0.93729 0.87637 1.20556 1.00114 0.92652 0.96666 1.70203 1.24133 1.12443 1.12366 1.24924 0.96701 0.95189 0.94170 1.43189 1.40640 1.13871 1.20032 0.74945 1.21034 1.07030 0.93269 0.93586 1.20193 0.98785 0.90634 1.03723 0.94164 0.95147 0.90005 0.94858 0.93320 0.92830 0.85240 0.95295 0.90318 0.77905 0.91278 0.91897 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.40 37.16 0.35 -2.39 16 2 C -0.16 -3.40 5.23 -26.73 -0.14 -3.54 16 3 C 0.19 4.45 1.93 -68.86 -0.13 4.32 16 4 H 0.03 0.86 6.76 -51.93 -0.35 0.51 16 5 C -0.49 -13.83 7.83 -34.44 -0.27 -14.10 16 6 H 0.08 2.58 8.06 -52.48 -0.42 2.16 16 7 C 0.07 1.97 5.42 -17.82 -0.10 1.87 16 8 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 9 Si 0.88 22.19 24.32 -169.99 -4.13 18.06 16 10 H -0.28 -6.85 6.91 56.52 0.39 -6.46 16 11 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 12 H -0.27 -6.54 6.53 56.52 0.37 -6.17 16 13 N -0.66 -14.27 6.19 -109.22 -0.68 -14.95 16 14 C 0.14 2.56 5.67 -4.98 -0.03 2.53 16 15 C 0.03 0.52 6.65 -82.86 -0.55 -0.04 16 16 N -0.47 -8.39 11.25 -10.88 -0.12 -8.52 16 17 C 0.17 2.21 13.04 -90.37 -1.18 1.03 16 18 N -0.57 -6.20 6.15 -10.30 -0.06 -6.26 16 19 H 0.41 2.76 8.96 -40.82 -0.37 2.39 16 20 C -0.03 -0.46 7.24 -81.60 -0.59 -1.05 16 21 C -0.08 -0.78 10.05 36.00 0.36 -0.42 16 22 H 0.04 0.71 6.63 -51.93 -0.34 0.36 16 23 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.08 1.89 6.85 -51.93 -0.36 1.53 16 25 H 0.03 0.62 7.50 -51.93 -0.39 0.23 16 26 H 0.05 1.11 3.42 -51.93 -0.18 0.93 16 27 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 28 H 0.33 6.65 6.69 -39.29 -0.26 6.38 16 29 H 0.03 0.49 7.19 -51.93 -0.37 0.11 16 30 H 0.08 1.57 7.92 -51.93 -0.41 1.16 16 31 H 0.20 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.94 7.81 -51.93 -0.41 0.54 16 LS Contribution 273.48 15.07 4.12 4.12 Total: -1.00 -33.93 273.48 -7.11 -41.04 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -4.73 Total: 5.49 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -2.28 Total: -11.79 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -0.09 Total: -56.92 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.13 Total: 18.06 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -33.93 -7.11 -41.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054797608.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.468 kcal (2) G-P(sol) polarization free energy of solvation -33.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds