Wall clock time and date at job start Mon Mar 30 2020 02:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47106 * 113.74092 * 3 2 1 5 5 C 1.36933 * 120.00103 * 264.76453 * 4 3 2 6 6 H 1.08004 * 120.00730 * 209.57934 * 5 4 3 7 7 C 1.38822 * 120.00167 * 29.57943 * 5 4 3 8 8 N 1.31619 * 119.99396 * 354.55352 * 7 5 4 9 9 Si 1.86793 * 120.00344 * 174.55304 * 7 5 4 10 10 H 1.48510 * 109.46851 * 89.99905 * 9 7 5 11 11 H 1.48500 * 109.47180 * 209.99866 * 9 7 5 12 12 H 1.48504 * 109.47038 * 330.00515 * 9 7 5 13 13 C 1.46495 * 119.99972 * 84.76543 * 4 3 2 14 14 H 1.09008 * 109.47388 * 64.96299 * 13 4 3 15 15 C 1.52995 * 109.47325 * 304.96281 * 13 4 3 16 16 C 1.53001 * 109.47521 * 300.00138 * 15 13 4 17 17 C 1.52997 * 109.46836 * 299.99954 * 16 15 13 18 18 C 1.53001 * 109.47311 * 59.99630 * 17 16 15 19 19 H 1.09000 * 109.47215 * 60.00166 * 18 17 16 20 20 N 1.46900 * 109.47211 * 180.02562 * 18 17 16 21 21 C 1.53001 * 109.47472 * 299.99980 * 18 17 16 22 22 H 1.09001 * 109.47632 * 353.74105 * 3 2 1 23 23 H 1.08999 * 109.47189 * 233.73697 * 3 2 1 24 24 H 0.97004 * 119.99933 * 179.97438 * 8 7 5 25 25 H 1.09007 * 109.46989 * 59.99903 * 15 13 4 26 26 H 1.09000 * 109.47450 * 179.97438 * 15 13 4 27 27 H 1.08996 * 109.47291 * 179.97438 * 16 15 13 28 28 H 1.08997 * 109.46558 * 59.99440 * 16 15 13 29 29 H 1.09004 * 109.47280 * 299.99794 * 17 16 15 30 30 H 1.08998 * 109.46966 * 179.97438 * 17 16 15 31 31 H 1.00900 * 110.99624 * 299.99659 * 20 18 17 32 32 H 1.00899 * 110.99990 * 63.95528 * 20 18 17 33 33 H 1.09000 * 109.47052 * 300.00285 * 21 18 17 34 34 H 1.08990 * 109.47360 * 179.97438 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0961 0.5570 -1.2643 5 6 3.4267 -0.2785 -2.2977 6 1 4.1901 0.0122 -3.0042 7 6 2.7806 -1.4993 -2.4372 8 7 1.9284 -1.9015 -1.5184 9 14 3.1208 -2.5710 -3.9288 10 1 4.2531 -3.4854 -3.6334 11 1 1.9109 -3.3693 -4.2511 12 1 3.4692 -1.7102 -5.0877 13 6 3.2304 2.0071 -1.4232 14 1 3.9938 2.3784 -0.7392 15 6 1.8931 2.6806 -1.1091 16 6 0.8217 2.1596 -2.0690 17 6 1.2280 2.4795 -3.5089 18 6 2.5654 1.8059 -3.8231 19 1 2.4654 0.7270 -3.7050 20 7 2.9558 2.1136 -5.2054 21 6 3.6369 2.3269 -2.8632 22 1 2.9719 -1.0207 0.1120 23 1 2.9711 0.6087 0.8286 24 1 1.4766 -2.7543 -1.6160 25 1 1.6036 2.4527 -0.0832 26 1 1.9932 3.7596 -1.2268 27 1 -0.1311 2.6392 -1.8449 28 1 0.7218 1.0807 -1.9508 29 1 1.3281 3.5585 -3.6271 30 1 0.4650 2.1079 -4.1928 31 1 2.2639 1.7795 -5.8594 32 1 3.1178 3.1024 -5.3239 33 1 3.7368 3.4059 -2.9813 34 1 4.5894 1.8468 -3.0867 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086409909.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:50 Heat of formation + Delta-G solvation = 48.413062 kcal Electronic energy + Delta-G solvation = -16675.731934 eV Core-core repulsion = 14223.177784 eV Total energy + Delta-G solvation = -2452.554151 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.90920 -35.43368 -34.04387 -32.76338 -31.03854 -29.29942 -27.52929 -26.17004 -23.56259 -21.44527 -20.55152 -18.67914 -17.22645 -16.05528 -15.43283 -15.04295 -14.61803 -13.93861 -13.76808 -13.21130 -12.81781 -12.53585 -12.14533 -11.84922 -11.67288 -11.48856 -11.22845 -10.97489 -10.93157 -10.84066 -10.30905 -10.10932 -10.09352 -9.92652 -9.72772 -9.60789 -9.43240 -8.47821 -8.00734 -6.93472 -5.95751 -3.41791 3.33917 3.43234 3.47089 4.19790 4.41978 4.56708 5.12302 5.20196 5.37100 5.51798 5.64777 5.78887 5.80939 6.00797 6.09171 6.21465 6.26767 6.29538 6.32788 6.46936 6.63555 6.67189 6.82316 6.97184 7.07575 7.21175 7.25444 7.40691 7.72774 7.80923 8.04289 8.25664 9.04054 9.28369 9.63177 10.13498 11.10691 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.020916 B = 0.017491 C = 0.011962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.383516 B = 1600.480493 C = 2340.255535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C 0.260 3.740 3 C 0.258 3.742 4 N -0.581 5.581 5 C -0.252 4.252 6 H 0.086 0.914 7 C 0.009 3.991 8 N -0.905 5.905 9 Si 0.899 3.101 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.271 1.271 13 C 0.172 3.828 14 H 0.037 0.963 15 C -0.132 4.132 16 C -0.112 4.112 17 C -0.140 4.140 18 C 0.068 3.932 19 H 0.139 0.861 20 N -0.845 5.845 21 C -0.092 4.092 22 H 0.119 0.881 23 H 0.047 0.953 24 H 0.260 0.740 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.035 0.965 28 H 0.092 0.908 29 H 0.039 0.961 30 H 0.044 0.956 31 H 0.331 0.669 32 H 0.321 0.679 33 H 0.042 0.958 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.343 7.252 -1.197 8.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.202 5.202 2 C -0.058 4.058 3 C 0.128 3.872 4 N -0.304 5.304 5 C -0.380 4.380 6 H 0.104 0.896 7 C -0.190 4.190 8 N -0.549 5.549 9 Si 0.728 3.272 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.196 1.196 13 C 0.065 3.935 14 H 0.055 0.945 15 C -0.172 4.172 16 C -0.150 4.150 17 C -0.180 4.180 18 C -0.042 4.042 19 H 0.156 0.844 20 N -0.371 5.371 21 C -0.130 4.130 22 H 0.137 0.863 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.110 0.890 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.143 0.857 32 H 0.132 0.868 33 H 0.061 0.939 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.264 6.622 -1.083 7.082 hybrid contribution -0.677 -0.022 -0.923 1.145 sum 1.587 6.600 -2.006 7.078 Atomic orbital electron populations 1.80828 1.14471 1.13301 1.11571 1.30415 0.96349 0.89064 0.89943 1.18250 0.80462 1.01135 0.87332 1.43992 1.75211 0.99729 1.11456 1.19232 1.15432 0.98021 1.05338 0.89624 1.25203 0.96732 0.99082 0.97935 1.69705 1.30068 1.21754 1.33352 0.86319 0.77130 0.80403 0.83383 1.21282 1.21829 1.19553 1.20560 0.93545 0.84678 0.94675 0.94542 1.22035 0.97767 0.98372 0.98987 1.21462 0.96105 1.03936 0.93539 1.22277 0.99214 0.98743 0.97726 1.22271 0.90945 1.05213 0.85732 0.84375 1.59081 1.51758 1.20202 1.06106 1.21428 0.99309 0.97955 0.94272 0.86333 0.93482 0.92958 0.92929 0.93474 0.94635 0.88978 0.94239 0.93752 0.85746 0.86761 0.93936 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -12.91 17.78 42.16 0.75 -12.16 16 2 C 0.26 6.02 9.42 -20.76 -0.20 5.82 16 3 C 0.26 5.41 5.04 -6.83 -0.03 5.38 16 4 N -0.58 -12.38 2.10 -168.97 -0.36 -12.74 16 5 C -0.25 -5.88 5.94 -15.06 -0.09 -5.97 16 6 H 0.09 2.02 5.88 -52.48 -0.31 1.72 16 7 C 0.01 0.23 5.24 -17.43 -0.09 0.14 16 8 N -0.90 -23.58 8.79 55.49 0.49 -23.09 16 9 Si 0.90 20.49 29.56 -169.99 -5.02 15.46 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 13 C 0.17 3.19 3.33 -67.93 -0.23 2.96 16 14 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 15 C -0.13 -2.40 4.89 -26.73 -0.13 -2.53 16 16 C -0.11 -2.24 5.26 -26.73 -0.14 -2.38 16 17 C -0.14 -2.53 5.49 -26.73 -0.15 -2.68 16 18 C 0.07 1.27 2.76 -67.71 -0.19 1.09 16 19 H 0.14 3.14 4.76 -51.93 -0.25 2.90 16 20 N -0.85 -13.81 9.25 -4.67 -0.04 -13.86 16 21 C -0.09 -1.62 4.45 -26.73 -0.12 -1.74 16 22 H 0.12 2.68 6.54 -51.93 -0.34 2.34 16 23 H 0.05 0.84 8.11 -51.93 -0.42 0.41 16 24 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 25 H 0.05 0.98 6.70 -51.93 -0.35 0.63 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.09 2.20 4.96 -51.93 -0.26 1.95 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.33 5.08 9.04 -39.29 -0.36 4.73 16 32 H 0.32 4.54 8.98 -39.29 -0.35 4.19 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 1.33 6.92 -51.93 -0.36 0.97 16 LS Contribution 259.65 15.07 3.91 3.91 Total: -1.00 -26.47 259.65 -6.29 -32.76 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -4.66 Total: 9.63 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -1.36 Total: 0.09 kcal Atomic # 7 Polarization: -62.69 SS G_CDS: 0.84 Total: -61.85 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -26.47 -6.29 -32.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086409909.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.176 kcal (2) G-P(sol) polarization free energy of solvation -26.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds