Wall clock time and date at job start Mon Mar 30 2020 03:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46927 * 2 1 4 4 N 1.46901 * 109.46886 * 179.97438 * 3 2 1 5 5 C 1.46901 * 110.99563 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.46941 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47268 * 179.97438 * 6 5 4 8 8 C 1.34638 * 125.86030 * 125.28489 * 7 6 5 9 9 N 1.37295 * 106.83163 * 180.15819 * 8 7 6 10 10 C 1.37560 * 126.50930 * 179.84735 * 9 8 7 11 11 H 1.08000 * 120.00101 * 19.36589 * 10 9 8 12 12 C 1.38937 * 119.99839 * 199.36035 * 10 9 8 13 13 N 1.31337 * 119.99813 * 23.50991 * 12 10 9 14 14 Si 1.86793 * 120.00615 * 203.50671 * 12 10 9 15 15 H 1.48501 * 109.47769 * 180.02562 * 14 12 10 16 16 H 1.48505 * 109.46916 * 300.00738 * 14 12 10 17 17 H 1.48501 * 109.46846 * 59.99905 * 14 12 10 18 18 C 1.36272 * 106.97428 * 359.58146 * 9 8 7 19 19 N 1.30486 * 108.51097 * 0.26672 * 18 9 8 20 20 H 1.09007 * 109.46943 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47576 * 300.00081 * 1 2 3 22 22 H 1.09000 * 109.47516 * 60.00469 * 1 2 3 23 23 H 1.08998 * 109.47576 * 239.99919 * 2 1 3 24 24 H 1.08999 * 109.46788 * 119.99683 * 2 1 3 25 25 H 1.08998 * 109.47059 * 59.99603 * 3 2 1 26 26 H 1.08997 * 109.47136 * 300.00018 * 3 2 1 27 27 H 1.00897 * 111.00247 * 303.95047 * 4 3 2 28 28 H 1.08998 * 109.47444 * 60.00168 * 5 4 3 29 29 H 1.09001 * 109.47127 * 300.00200 * 5 4 3 30 30 H 1.08998 * 109.47070 * 59.99748 * 6 5 4 31 31 H 1.09001 * 109.47218 * 299.99954 * 6 5 4 32 32 H 1.08003 * 126.58128 * 0.02562 * 8 7 6 33 33 H 0.97001 * 120.00069 * 5.86099 * 13 12 10 34 34 H 1.07994 * 125.74220 * 180.26120 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0353 2.8140 0.0000 6 6 5.5648 2.7732 0.0000 7 6 6.1048 4.1802 -0.0012 8 6 6.9759 4.6914 0.8891 9 7 7.1969 5.9966 0.5246 10 6 8.0199 6.8961 1.1616 11 1 8.7939 6.5427 1.8268 12 6 7.8554 8.2592 0.9493 13 7 6.6954 8.7259 0.5472 14 14 9.2839 9.4283 1.2356 15 1 8.8527 10.8185 0.9411 16 1 9.7228 9.3360 2.6513 17 1 10.4118 9.0596 0.3427 18 6 6.4506 6.2297 -0.5915 19 7 5.8043 5.1371 -0.8935 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5137 -0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 1.8932 -0.5138 0.8900 25 1 1.6765 1.9564 0.8899 26 1 1.6766 1.9564 -0.8900 27 1 3.8702 0.9166 0.7822 28 1 3.6855 3.3379 0.8895 29 1 3.6861 3.3368 -0.8904 30 1 5.9143 2.2495 -0.8897 31 1 5.9143 2.2503 0.8903 32 1 7.4148 4.1747 1.7298 33 1 5.9309 8.1328 0.4802 34 1 6.4022 7.1619 -1.1347 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087016849.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:53 Heat of formation + Delta-G solvation = 30.708587 kcal Electronic energy + Delta-G solvation = -14571.739218 eV Core-core repulsion = 12118.417344 eV Total energy + Delta-G solvation = -2453.321874 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.59311 -36.89134 -34.55098 -33.36734 -31.10525 -30.11084 -27.09676 -25.21995 -24.30710 -21.85056 -21.28028 -20.39024 -19.01030 -18.24502 -16.06692 -15.38199 -14.76943 -14.58454 -14.23749 -14.02085 -13.75264 -13.16766 -12.94812 -12.51853 -12.37405 -12.07917 -11.90746 -11.46668 -11.34398 -11.14524 -10.86865 -10.81808 -10.59503 -10.43785 -10.29569 -9.44426 -8.67814 -8.48265 -8.25193 -7.28510 -7.03130 -4.56531 3.00428 3.12155 3.32420 3.53382 3.91616 4.18923 4.42258 4.71019 4.89665 4.96683 5.00908 5.28489 5.47054 5.54341 5.66643 5.69851 5.82613 5.86770 5.90505 6.08784 6.12530 6.17236 6.40362 6.51853 6.59299 6.68117 7.06744 7.13442 7.26215 7.55981 7.67467 7.91158 8.13385 8.67905 9.20368 9.53578 10.10057 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.076877 B = 0.004336 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.130887 B = 6456.586581 C = 6593.249473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.057 3.943 4 N -0.694 5.694 5 C 0.070 3.930 6 C -0.011 4.011 7 C -0.040 4.040 8 C -0.113 4.113 9 N -0.264 5.264 10 C -0.434 4.434 11 H 0.102 0.898 12 C 0.026 3.974 13 N -0.839 5.839 14 Si 1.085 2.915 15 H -0.272 1.272 16 H -0.278 1.278 17 H -0.276 1.276 18 C 0.100 3.900 19 N -0.514 5.514 20 H 0.054 0.946 21 H 0.052 0.948 22 H 0.055 0.945 23 H 0.070 0.930 24 H 0.058 0.942 25 H 0.025 0.975 26 H 0.070 0.930 27 H 0.335 0.665 28 H 0.024 0.976 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.146 0.854 33 H 0.291 0.709 34 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.221 -10.027 1.563 11.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.072 4.072 4 N -0.324 5.324 5 C -0.059 4.059 6 C -0.050 4.050 7 C -0.176 4.176 8 C -0.254 4.254 9 N 0.072 4.928 10 C -0.563 4.563 11 H 0.120 0.880 12 C -0.188 4.188 13 N -0.468 5.468 14 Si 0.908 3.092 15 H -0.197 1.197 16 H -0.203 1.203 17 H -0.202 1.202 18 C -0.177 4.177 19 N -0.234 5.234 20 H 0.073 0.927 21 H 0.071 0.929 22 H 0.074 0.926 23 H 0.088 0.912 24 H 0.077 0.923 25 H 0.044 0.956 26 H 0.089 0.911 27 H 0.152 0.848 28 H 0.043 0.957 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.163 0.837 33 H 0.104 0.896 34 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -5.191 -8.378 0.128 9.857 hybrid contribution -0.084 -1.130 1.884 2.199 sum -5.275 -9.508 2.012 11.058 Atomic orbital electron populations 1.21735 0.95809 1.01511 1.01842 1.21510 0.95379 0.96721 1.02403 1.21979 0.88231 0.96488 1.00507 1.60535 1.06882 1.15498 1.49535 1.21902 0.95389 0.87642 1.00964 1.19472 0.93124 0.91334 1.01110 1.19951 1.03771 0.95953 0.97878 1.21996 1.09656 0.88199 1.05567 1.41796 1.26425 1.08064 1.16525 1.20817 1.14796 0.89122 1.31573 0.87994 1.26845 1.02027 0.96274 0.93660 1.70666 1.00335 1.40432 1.35328 0.83300 0.73150 0.75460 0.77327 1.19666 1.20318 1.20189 1.24569 1.01239 0.99699 0.92226 1.69849 1.26224 0.99647 1.27698 0.92722 0.92917 0.92611 0.91170 0.92336 0.95642 0.91107 0.84845 0.95731 0.90338 0.91505 0.92400 0.83672 0.89581 0.79712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.12 -1.22 6.19 -26.73 -0.17 -1.39 16 3 C 0.06 0.71 5.69 -3.82 -0.02 0.69 16 4 N -0.69 -9.76 6.50 -113.78 -0.74 -10.50 16 5 C 0.07 1.20 5.65 -3.82 -0.02 1.18 16 6 C -0.01 -0.21 6.04 -27.88 -0.17 -0.38 16 7 C -0.04 -0.93 6.35 -82.81 -0.53 -1.46 16 8 C -0.11 -2.76 11.39 -16.38 -0.19 -2.95 16 9 N -0.26 -7.11 2.84 -63.13 -0.18 -7.29 16 10 C -0.43 -11.56 10.01 -14.72 -0.15 -11.71 16 11 H 0.10 2.59 7.93 -52.49 -0.42 2.17 16 12 C 0.03 0.66 5.21 -17.50 -0.09 0.57 16 13 N -0.84 -22.79 12.58 55.49 0.70 -22.09 16 14 Si 1.08 21.67 29.98 -169.99 -5.10 16.57 16 15 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 16 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 17 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 18 C 0.10 2.69 10.34 -89.25 -0.92 1.77 16 19 N -0.51 -13.27 11.22 -10.57 -0.12 -13.38 16 20 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.33 4.17 8.73 -39.29 -0.34 3.83 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.06 0.94 8.11 -51.93 -0.42 0.52 16 32 H 0.15 3.15 8.06 -52.48 -0.42 2.73 16 33 H 0.29 8.18 6.38 -40.82 -0.26 7.92 16 34 H 0.19 4.93 6.78 -52.49 -0.36 4.58 16 LS Contribution 288.63 15.07 4.35 4.35 Total: -1.00 -28.97 288.63 -8.21 -37.18 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -5.24 Total: 9.77 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -1.88 Total: -14.61 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.34 Total: -53.26 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.10 Total: 16.57 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.97 -8.21 -37.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087016849.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.892 kcal (2) G-P(sol) polarization free energy of solvation -28.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds