Wall clock time and date at job start Mon Mar 30 2020 03:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47158 * 2 1 4 4 C 1.52992 * 109.46890 * 175.49144 * 3 2 1 5 5 C 1.52999 * 109.47351 * 294.46706 * 4 3 2 6 6 N 1.46506 * 109.46818 * 295.48710 * 3 2 1 7 7 N 1.39844 * 125.70448 * 300.00306 * 6 3 2 8 8 C 1.30261 * 109.53696 * 180.02562 * 7 6 3 9 9 C 1.41807 * 108.26032 * 359.97438 * 8 7 6 10 10 C 1.41189 * 126.63477 * 180.26686 * 9 8 7 11 11 H 1.08001 * 119.99891 * 179.68582 * 10 9 8 12 12 C 1.39550 * 120.00093 * 359.68221 * 10 9 8 13 13 N 1.31201 * 120.00268 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99943 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46969 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47077 * 120.00395 * 14 12 10 17 17 H 1.48503 * 109.46630 * 240.00131 * 14 12 10 18 18 C 1.35157 * 125.69466 * 120.00522 * 6 3 2 19 19 N 1.37735 * 126.56589 * 0.02562 * 18 6 3 20 20 H 1.09006 * 109.46639 * 305.51935 * 1 2 3 21 21 H 1.09003 * 109.46885 * 65.51306 * 1 2 3 22 22 H 1.08997 * 109.47624 * 185.52045 * 1 2 3 23 23 H 1.09004 * 109.46518 * 239.99680 * 2 1 3 24 24 H 1.09002 * 109.46702 * 120.00271 * 2 1 3 25 25 H 1.09000 * 109.47263 * 55.48858 * 3 2 1 26 26 H 1.09008 * 109.47545 * 54.46689 * 4 3 2 27 27 H 1.09002 * 109.47505 * 174.46228 * 4 3 2 28 28 H 1.09001 * 109.46856 * 306.06925 * 5 4 3 29 29 H 1.09002 * 109.47119 * 66.06655 * 5 4 3 30 30 H 1.09000 * 109.47571 * 186.06517 * 5 4 3 31 31 H 1.07999 * 125.87084 * 179.97438 * 8 7 6 32 32 H 0.96993 * 120.00100 * 179.97438 * 13 12 10 33 33 H 0.96998 * 119.99822 * 180.02562 * 19 18 6 34 34 H 0.97000 * 119.99364 * 0.02562 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5658 1.4439 0.1134 5 6 3.9765 0.8816 1.4757 6 7 1.6424 2.1010 -1.2469 7 7 2.0026 1.6943 -2.5355 8 6 1.4777 2.5040 -3.4105 9 6 0.7376 3.4924 -2.7133 10 6 0.0079 4.5576 -3.2845 11 1 -0.5242 5.2498 -2.6488 12 6 -0.0256 4.7162 -4.6706 13 7 0.6205 3.8752 -5.4430 14 14 -0.9905 6.1260 -5.4263 15 1 -1.6252 6.9255 -4.3479 16 1 -0.0717 6.9910 -6.2092 17 1 -2.0419 5.5817 -6.3227 18 6 0.8662 3.2031 -1.3439 19 7 0.3085 3.9084 -0.3004 20 1 -0.3633 0.5971 0.8365 21 1 -0.3633 0.4260 -0.9353 22 1 -0.3634 -1.0228 0.0989 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.6123 1.9791 0.8468 26 1 3.9896 0.8253 -0.6778 27 1 3.9366 2.4642 0.0147 28 1 3.4667 1.4336 2.2653 29 1 3.7006 -0.1714 1.5323 30 1 5.0547 0.9818 1.6001 31 1 1.5874 2.4345 -4.4827 32 1 0.5968 3.9852 -6.4064 33 1 -0.2366 4.6904 -0.4802 34 1 0.4610 3.6231 0.6140 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087579939.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:04 Heat of formation + Delta-G solvation = 57.167905 kcal Electronic energy + Delta-G solvation = -15653.560871 eV Core-core repulsion = 13201.386359 eV Total energy + Delta-G solvation = -2452.174512 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.42199 -36.12288 -33.20047 -33.03865 -31.51820 -29.62569 -27.60600 -25.68984 -23.86146 -22.48955 -21.02111 -19.33116 -18.45209 -16.89532 -16.12158 -15.12807 -14.66092 -14.40527 -14.34765 -13.67890 -13.41218 -12.79245 -12.47917 -12.20008 -11.94182 -11.60899 -11.27325 -11.18974 -11.05305 -10.81972 -10.63534 -10.55704 -10.33190 -10.26728 -9.78841 -9.58129 -9.02941 -8.54970 -7.25172 -6.42997 -6.16594 -3.59387 3.18958 3.31663 3.35052 3.68351 3.80326 4.31971 4.61538 4.89053 5.06002 5.22104 5.31982 5.42442 5.55375 5.64729 5.78763 5.80262 5.94408 6.02532 6.07893 6.21870 6.34167 6.52701 6.57707 6.62502 6.97325 7.19774 7.41976 7.83938 8.01940 8.33796 8.75820 8.85694 8.99560 9.34477 9.43254 9.78634 10.85130 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.043747 B = 0.007386 C = 0.007256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.885516 B = 3789.821604 C = 3857.817977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.130 4.130 3 C 0.182 3.818 4 C -0.130 4.130 5 C -0.149 4.149 6 N -0.399 5.399 7 N -0.359 5.359 8 C 0.052 3.948 9 C -0.086 4.086 10 C -0.424 4.424 11 H 0.058 0.942 12 C 0.058 3.942 13 N -0.857 5.857 14 Si 0.907 3.093 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.211 3.789 19 N -0.862 5.862 20 H 0.045 0.955 21 H 0.062 0.938 22 H 0.047 0.953 23 H 0.075 0.925 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.201 0.799 32 H 0.266 0.734 33 H 0.404 0.596 34 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.650 -3.837 10.556 11.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.168 4.168 3 C 0.077 3.923 4 C -0.169 4.169 5 C -0.207 4.207 6 N -0.191 5.191 7 N -0.183 5.183 8 C -0.132 4.132 9 C -0.100 4.100 10 C -0.460 4.460 11 H 0.077 0.923 12 C -0.148 4.148 13 N -0.492 5.492 14 Si 0.735 3.265 15 H -0.195 1.195 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.009 4.009 19 N -0.413 5.413 20 H 0.064 0.936 21 H 0.081 0.919 22 H 0.066 0.934 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.217 0.783 32 H 0.077 0.923 33 H 0.233 0.767 34 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.455 -4.972 10.465 11.843 hybrid contribution -1.176 1.699 -0.147 2.071 sum 1.279 -3.273 10.317 10.899 Atomic orbital electron populations 1.21687 0.95722 1.00596 1.02331 1.21891 0.96356 0.96244 1.02300 1.20742 0.94270 0.93093 0.84147 1.21842 0.95412 1.02002 0.97625 1.21802 1.00981 1.00963 0.96908 1.47609 1.43902 1.22864 1.04700 1.76634 1.28833 1.26643 0.86195 1.24799 0.96043 0.92504 0.99837 1.17437 1.05880 1.00378 0.86305 1.18367 1.27122 1.09505 0.90995 0.92338 1.25414 0.95640 0.96660 0.97135 1.69510 1.39628 1.35386 1.04688 0.86275 0.79567 0.81559 0.79094 1.19549 1.20811 1.20813 1.18154 1.01324 0.91565 0.89906 1.40612 1.61865 1.34748 1.04086 0.93564 0.91923 0.93354 0.90666 0.91664 0.90867 0.90755 0.91927 0.92991 0.92506 0.92743 0.78340 0.92284 0.76660 0.79961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.73 37.16 0.36 -1.92 16 2 C -0.13 -1.99 5.40 -26.73 -0.14 -2.13 16 3 C 0.18 3.08 2.53 -67.93 -0.17 2.90 16 4 C -0.13 -2.01 5.65 -26.74 -0.15 -2.16 16 5 C -0.15 -1.69 9.53 37.16 0.35 -1.34 16 6 N -0.40 -8.80 2.81 -53.20 -0.15 -8.95 16 7 N -0.36 -9.03 12.28 30.94 0.38 -8.65 16 8 C 0.05 1.44 10.90 -16.85 -0.18 1.25 16 9 C -0.09 -2.36 5.96 -106.54 -0.63 -2.99 16 10 C -0.42 -11.73 9.24 -37.97 -0.35 -12.08 16 11 H 0.06 1.54 7.36 -52.49 -0.39 1.16 16 12 C 0.06 1.57 5.49 -17.33 -0.10 1.47 16 13 N -0.86 -23.67 10.32 55.53 0.57 -23.10 16 14 Si 0.91 20.50 29.56 -169.99 -5.02 15.48 16 15 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 C 0.21 4.97 8.06 -153.29 -1.24 3.74 16 19 N -0.86 -16.34 9.03 31.66 0.29 -16.06 16 20 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 21 H 0.06 1.21 7.89 -51.93 -0.41 0.80 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 24 H 0.06 0.81 6.52 -51.93 -0.34 0.47 16 25 H 0.07 1.13 6.78 -51.93 -0.35 0.77 16 26 H 0.07 1.25 8.14 -51.92 -0.42 0.82 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.59 6.78 -51.93 -0.35 0.24 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.20 5.67 5.76 -52.49 -0.30 5.37 16 32 H 0.27 6.85 8.30 -40.82 -0.34 6.51 16 33 H 0.40 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.37 5.88 7.62 -40.82 -0.31 5.57 16 LS Contribution 280.12 15.07 4.22 4.22 Total: -1.00 -29.93 280.12 -6.85 -36.78 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -4.89 Total: 13.53 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -2.25 Total: -13.26 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: 1.09 Total: -56.75 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.93 -6.85 -36.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087579939.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.953 kcal (2) G-P(sol) polarization free energy of solvation -29.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds