Wall clock time and date at job start Mon Mar 30 2020 02:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99992 * 2 1 4 4 H 1.48506 * 109.47115 * 240.00020 * 3 2 1 5 5 H 1.48500 * 109.46884 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47101 * 119.99910 * 3 2 1 7 7 C 1.37882 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00488 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99556 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46856 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47239 * 179.97438 * 10 9 7 12 12 C 1.46905 * 111.00171 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.46987 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.46969 * 179.97438 * 13 12 11 15 15 N 1.46506 * 109.47035 * 179.97438 * 14 13 12 16 16 C 1.34944 * 126.03372 * 125.00124 * 15 14 13 17 17 C 1.35317 * 107.74658 * 179.97438 * 16 15 14 18 18 C 1.39871 * 107.91935 * 0.02562 * 17 16 15 19 19 N 1.30845 * 108.20108 * 359.74200 * 18 17 16 20 20 H 0.96993 * 119.99611 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47280 * 60.00246 * 9 7 2 22 22 H 1.09001 * 109.47042 * 299.99987 * 9 7 2 23 23 H 1.09002 * 109.47089 * 59.99989 * 10 9 7 24 24 H 1.09001 * 109.47170 * 299.99769 * 10 9 7 25 25 H 1.00907 * 111.00219 * 56.04553 * 11 10 9 26 26 H 1.08992 * 109.46864 * 59.99773 * 12 11 10 27 27 H 1.08996 * 109.46646 * 299.99677 * 12 11 10 28 28 H 1.09004 * 109.47298 * 59.99949 * 13 12 11 29 29 H 1.09004 * 109.47552 * 299.99821 * 13 12 11 30 30 H 1.09004 * 109.46930 * 59.99996 * 14 13 12 31 31 H 1.09000 * 109.47312 * 299.99939 * 14 13 12 32 32 H 1.08001 * 126.12891 * 0.02562 * 16 15 14 33 33 H 1.08002 * 126.04160 * 179.97438 * 17 16 15 34 34 H 1.07995 * 125.90070 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5108 -4.9343 0.0001 12 6 2.4353 -6.0759 0.0007 13 6 1.6353 -7.3800 0.0007 14 6 2.5981 -8.5691 0.0007 15 7 1.8320 -9.8178 0.0013 16 6 1.9501 -10.8221 -0.8923 17 6 1.0711 -11.7900 -0.5436 18 6 0.3922 -11.3624 0.6021 19 7 0.8512 -10.1825 0.9326 20 1 -0.4849 0.8400 -0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.8720 -3.6043 0.8895 24 1 2.8719 -3.6044 -0.8905 25 1 0.8741 -4.9846 -0.7811 26 1 3.0632 -6.0344 0.8906 27 1 3.0633 -6.0354 -0.8893 28 1 1.0076 -7.4212 -0.8895 29 1 1.0069 -7.4209 0.8905 30 1 3.2261 -8.5280 0.8908 31 1 3.2261 -8.5281 -0.8893 32 1 2.6257 -10.8489 -1.7345 33 1 0.9199 -12.7268 -1.0593 34 1 -0.3753 -11.9127 1.1258 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163809513.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:09 Heat of formation + Delta-G solvation = 62.679309 kcal Electronic energy + Delta-G solvation = -14127.150389 eV Core-core repulsion = 11675.214869 eV Total energy + Delta-G solvation = -2451.935520 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.21832 -36.73923 -34.46118 -32.86936 -30.99935 -30.07486 -28.51623 -25.39512 -23.51821 -21.74341 -21.13736 -20.79874 -20.24050 -17.36992 -16.30178 -15.94769 -15.31098 -14.72505 -14.47853 -14.04486 -13.81728 -13.76507 -13.04814 -12.92816 -12.35841 -12.33065 -11.83682 -11.48675 -11.18765 -10.91680 -10.89139 -10.66372 -10.55848 -9.99258 -9.57518 -9.38895 -9.17114 -8.72817 -8.35689 -7.86756 -6.00034 -4.03053 1.78249 2.38858 2.72613 3.32983 3.37405 3.39605 4.24768 4.44280 4.61734 4.68071 4.86731 5.02525 5.13587 5.33742 5.35712 5.38132 5.48297 5.61405 5.69337 5.85001 6.05848 6.21276 6.31127 6.39196 6.52419 6.87703 6.95462 7.44575 7.59209 7.70783 7.80596 7.92807 8.07339 8.42346 9.04035 9.60675 11.11417 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.091147 B = 0.003397 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 307.121416 B = 8240.198073 C = 8408.526731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.692 5.692 12 C 0.062 3.938 13 C -0.128 4.128 14 C 0.133 3.867 15 N -0.368 5.368 16 C 0.050 3.950 17 C -0.280 4.280 18 C 0.038 3.962 19 N -0.290 5.290 20 H 0.261 0.739 21 H 0.014 0.986 22 H 0.026 0.974 23 H 0.059 0.941 24 H 0.015 0.985 25 H 0.336 0.664 26 H 0.071 0.929 27 H 0.024 0.976 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.172 0.828 33 H 0.145 0.855 34 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.756 -21.134 -2.607 21.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.322 5.322 12 C -0.068 4.068 13 C -0.167 4.167 14 C 0.012 3.988 15 N -0.150 5.150 16 C -0.096 4.096 17 C -0.310 4.310 18 C -0.148 4.148 19 N -0.112 5.112 20 H 0.071 0.929 21 H 0.032 0.968 22 H 0.044 0.956 23 H 0.077 0.923 24 H 0.034 0.966 25 H 0.154 0.846 26 H 0.089 0.911 27 H 0.042 0.958 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.189 0.811 33 H 0.163 0.837 34 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 4.537 -19.900 -1.093 20.440 hybrid contribution 0.858 0.239 -1.604 1.835 sum 5.394 -19.661 -2.697 20.565 Atomic orbital electron populations 1.69963 1.06049 1.26750 1.50462 1.25012 0.94854 0.99241 0.95264 0.86635 0.79556 0.83068 0.78587 1.20296 1.21236 1.20195 1.21140 0.92943 0.91031 1.51138 0.92796 1.19071 0.94026 0.90404 0.97766 1.22170 0.97003 0.88383 0.98651 1.60543 1.19742 1.02080 1.49875 1.21818 0.94652 0.90113 1.00257 1.21844 0.98348 0.92212 1.04289 1.21773 0.93047 0.80176 1.03799 1.48839 1.30308 1.15151 1.20715 1.22592 1.01283 0.89436 0.96320 1.21500 1.04066 1.02844 1.02543 1.23907 1.00356 0.93567 0.96933 1.77412 1.04775 1.15545 1.13426 0.92891 0.96809 0.95604 0.92286 0.96639 0.84619 0.91102 0.95809 0.91659 0.89459 0.89554 0.88730 0.81127 0.83745 0.80188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.21 13.29 55.43 0.74 -26.47 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.66 5.23 -27.88 -0.15 0.51 16 10 C 0.07 1.40 5.62 -3.83 -0.02 1.38 16 11 N -0.69 -12.43 6.50 -113.78 -0.74 -13.17 16 12 C 0.06 0.85 5.69 -3.82 -0.02 0.83 16 13 C -0.13 -1.55 5.66 -26.73 -0.15 -1.70 16 14 C 0.13 1.29 6.51 -4.04 -0.03 1.27 16 15 N -0.37 -4.19 3.68 -61.36 -0.23 -4.42 16 16 C 0.05 0.47 11.45 -17.22 -0.20 0.27 16 17 C -0.28 -2.61 10.80 -40.01 -0.43 -3.05 16 18 C 0.04 0.41 12.03 -17.36 -0.21 0.20 16 19 N -0.29 -3.87 12.42 30.63 0.38 -3.49 16 20 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 21 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 22 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 24 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.34 5.85 8.73 -39.29 -0.34 5.51 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.09 0.67 8.07 -51.93 -0.42 0.25 16 32 H 0.17 0.98 8.06 -52.49 -0.42 0.55 16 33 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 294.61 15.07 4.44 4.44 Total: -1.00 -32.82 294.61 -7.42 -40.24 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -5.38 Total: 0.16 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -1.62 Total: -14.05 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: 0.15 Total: -47.55 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.82 -7.42 -40.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163809513.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.922 kcal (2) G-P(sol) polarization free energy of solvation -32.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds