Wall clock time and date at job start Mon Mar 30 2020 03:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.53450 * 2 1 4 4 C 1.53038 * 109.50268 * 120.09724 * 2 1 3 5 5 N 1.46853 * 109.51304 * 179.11687 * 4 2 1 6 6 C 1.46840 * 111.19869 * 298.26339 * 5 4 2 7 7 C 1.53038 * 109.52568 * 61.74137 * 6 5 4 8 8 H 1.09006 * 109.50103 * 60.79927 * 7 6 5 9 9 N 1.46497 * 109.50730 * 180.87959 * 7 6 5 10 10 C 1.36939 * 119.99878 * 60.00233 * 9 7 6 11 11 H 1.07996 * 120.00206 * 19.75065 * 10 9 7 12 12 C 1.38812 * 119.99983 * 199.76057 * 10 9 7 13 13 N 1.31623 * 119.99977 * 21.99791 * 12 10 9 14 14 Si 1.86801 * 120.00006 * 202.00356 * 12 10 9 15 15 H 1.48499 * 109.47171 * 59.99476 * 14 12 10 16 16 H 1.48502 * 109.47007 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46617 * 299.99614 * 14 12 10 18 18 C 1.46501 * 120.00238 * 240.00025 * 9 7 6 19 19 C 1.47210 * 109.46897 * 83.93716 * 18 9 7 20 20 N 6.45744 * 155.66736 * 248.19797 * 2 1 3 21 21 C 1.53096 * 109.49224 * 239.91032 * 2 1 3 22 22 H 1.09003 * 109.47734 * 299.89968 * 1 2 3 23 23 H 1.09001 * 109.47142 * 59.90497 * 1 2 3 24 24 H 1.09003 * 109.47211 * 179.89947 * 1 2 3 25 25 H 1.09000 * 109.46389 * 59.10837 * 4 2 1 26 26 H 1.09002 * 109.46187 * 299.12353 * 4 2 1 27 27 H 1.00900 * 110.99541 * 62.36056 * 5 4 2 28 28 H 1.08996 * 109.46232 * 181.75800 * 6 5 4 29 29 H 1.09006 * 109.46382 * 301.73776 * 6 5 4 30 30 H 0.96998 * 119.99785 * 180.02562 * 13 12 10 31 31 H 1.08992 * 109.47285 * 203.93778 * 18 9 7 32 32 H 1.08997 * 109.46961 * 323.94499 * 18 9 7 33 33 H 1.08997 * 109.52590 * 62.49212 * 21 2 1 34 34 H 1.08999 * 109.57386 * 302.33284 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0409 -0.7234 1.2481 5 7 3.5093 -0.7420 1.2377 6 6 4.0228 -1.4728 0.0721 7 6 3.5708 -0.7717 -1.2110 8 1 3.9679 0.2432 -1.2303 9 7 4.0656 -1.5129 -2.3737 10 6 3.6953 -2.8177 -2.5623 11 1 2.8179 -3.2069 -2.0673 12 6 4.4478 -3.6401 -3.3895 13 7 5.7050 -3.3449 -3.6436 14 14 3.6760 -5.1656 -4.1421 15 1 2.5190 -4.7706 -4.9851 16 1 4.6816 -5.8672 -4.9798 17 1 3.2136 -6.0715 -3.0601 18 6 4.9566 -0.8581 -3.3348 19 6 6.3436 -0.9315 -2.8469 20 7 7.4138 -0.9882 -2.4704 21 6 2.0408 -0.7236 -1.2487 22 1 -0.3635 0.5123 0.8909 23 1 -0.3633 0.5153 -0.8891 24 1 -0.3634 -1.0277 -0.0018 25 1 1.6648 -1.7464 1.2544 26 1 1.6906 -0.2021 2.1390 27 1 3.8829 0.1947 1.2706 28 1 5.1118 -1.4960 0.1089 29 1 3.6372 -2.4923 0.0839 30 1 6.2307 -3.9194 -4.2220 31 1 4.8836 -1.3610 -4.2990 32 1 4.6657 0.1863 -3.4467 33 1 1.7151 -0.1868 -2.1397 34 1 1.6449 -1.7389 -1.2701 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401949621.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:14 Heat of formation + Delta-G solvation = 39.726956 kcal Electronic energy + Delta-G solvation = -15883.373355 eV Core-core repulsion = 13430.442546 eV Total energy + Delta-G solvation = -2452.930808 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.82250 -35.98162 -34.20635 -32.65604 -31.64546 -29.28395 -26.59850 -26.15195 -23.76784 -22.59330 -20.35686 -19.78230 -17.22739 -15.89001 -15.45781 -15.15198 -14.79975 -14.19882 -13.85692 -13.66562 -13.19296 -12.44211 -12.19374 -11.96126 -11.69097 -11.57551 -11.46870 -11.37033 -11.00201 -10.90284 -10.73200 -10.66759 -10.42990 -10.28844 -10.09457 -9.82047 -9.69016 -8.75681 -8.01049 -7.05648 -5.96596 -3.35596 3.32923 3.40292 3.40910 4.08432 4.37220 4.48941 4.74651 5.03668 5.12348 5.22148 5.34841 5.54478 5.61678 5.68674 5.76748 5.82869 5.96463 6.00035 6.07108 6.19353 6.26375 6.39001 6.48564 6.59011 6.66398 6.89903 6.96431 7.01321 7.42404 7.67459 7.79467 8.16347 8.96192 9.20161 9.62678 10.07914 11.11877 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.024712 B = 0.010482 C = 0.008452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.759161 B = 2670.604882 C = 3311.987800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 H 0.062 0.938 4 C 0.064 3.936 5 N -0.690 5.690 6 C 0.050 3.950 7 C 0.143 3.857 8 H 0.051 0.949 9 N -0.576 5.576 10 C -0.262 4.262 11 H 0.078 0.922 12 C 0.006 3.994 13 N -0.898 5.898 14 Si 0.904 3.096 15 H -0.282 1.282 16 H -0.291 1.291 17 H -0.283 1.283 18 C 0.259 3.741 19 C 0.247 3.753 20 N -0.506 5.506 21 C -0.118 4.118 22 H 0.048 0.952 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.332 0.668 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.260 0.740 31 H 0.108 0.892 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.565 6.922 3.906 12.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.150 4.150 3 H 0.080 0.920 4 C -0.066 4.066 5 N -0.317 5.317 6 C -0.080 4.080 7 C 0.034 3.966 8 H 0.069 0.931 9 N -0.296 5.296 10 C -0.391 4.391 11 H 0.096 0.904 12 C -0.193 4.193 13 N -0.542 5.542 14 Si 0.734 3.266 15 H -0.209 1.209 16 H -0.217 1.217 17 H -0.209 1.209 18 C 0.129 3.871 19 C -0.072 4.072 20 N -0.188 5.188 21 C -0.158 4.158 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.148 0.852 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.126 0.874 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.810 6.158 4.785 11.037 hybrid contribution -0.820 -0.438 -1.331 1.624 sum -8.631 5.721 3.453 10.915 Atomic orbital electron populations 1.21734 0.95472 1.01658 1.00984 1.21940 0.95879 0.99705 0.97470 0.91958 1.22047 0.88261 1.00512 0.95775 1.60765 1.06890 1.20871 1.43181 1.22504 0.99753 0.98604 0.87155 1.21142 0.92743 0.94459 0.88269 0.93084 1.44045 1.52690 1.10481 1.22415 1.19071 1.06833 0.86408 1.26778 0.90399 1.24910 0.94645 0.98030 1.01710 1.69896 1.05318 1.39835 1.39104 0.86331 0.78414 0.82531 0.79322 1.20874 1.21740 1.20926 1.18242 0.78658 0.95300 0.94866 1.30534 0.95427 0.89132 0.92066 1.80804 1.14119 1.13093 1.10741 1.22020 0.97287 1.00755 0.95690 0.93266 0.92973 0.92722 0.91208 0.91756 0.85215 0.91474 0.90415 0.93005 0.87402 0.92543 0.92391 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.20 37.16 0.34 -1.23 16 2 C -0.13 -1.68 2.87 -90.55 -0.26 -1.94 16 3 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.06 0.87 5.84 -3.83 -0.02 0.84 16 5 N -0.69 -10.73 6.87 -113.81 -0.78 -11.51 16 6 C 0.05 0.95 5.82 -3.84 -0.02 0.93 16 7 C 0.14 2.60 2.77 -67.85 -0.19 2.41 16 8 H 0.05 0.89 7.88 -51.93 -0.41 0.48 16 9 N -0.58 -12.49 2.43 -168.88 -0.41 -12.90 16 10 C -0.26 -6.35 8.34 -15.06 -0.13 -6.47 16 11 H 0.08 1.87 6.83 -52.49 -0.36 1.52 16 12 C 0.01 0.16 4.82 -17.43 -0.08 0.08 16 13 N -0.90 -24.33 9.60 55.49 0.53 -23.80 16 14 Si 0.90 20.53 29.61 -169.99 -5.03 15.49 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 C 0.26 5.45 5.35 -6.82 -0.04 5.41 16 19 C 0.25 5.87 13.57 -20.76 -0.28 5.59 16 20 N -0.51 -13.00 18.54 42.15 0.78 -12.21 16 21 C -0.12 -1.89 4.57 -26.62 -0.12 -2.01 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.33 4.68 8.86 -39.29 -0.35 4.33 16 28 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.08 1.63 7.63 -51.93 -0.40 1.23 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.11 2.42 6.61 -51.93 -0.34 2.08 16 32 H 0.06 0.97 8.05 -51.93 -0.42 0.55 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.20 6.91 -51.93 -0.36 0.85 16 LS Contribution 277.72 15.07 4.19 4.19 Total: -1.00 -27.89 277.72 -6.67 -34.56 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.15 Total: 2.57 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -0.80 Total: 3.62 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: 0.12 Total: -60.43 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.49 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -27.89 -6.67 -34.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401949621.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.289 kcal (2) G-P(sol) polarization free energy of solvation -27.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds