Wall clock time and date at job start Mon Mar 30 2020 03:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.53450 * 2 1 4 4 C 1.53038 * 109.50268 * 120.09724 * 2 1 3 5 5 N 1.46853 * 109.51304 * 179.11687 * 4 2 1 6 6 C 1.46840 * 111.19869 * 298.26339 * 5 4 2 7 7 C 1.53038 * 109.52568 * 61.74137 * 6 5 4 8 8 H 1.09006 * 109.50103 * 60.79927 * 7 6 5 9 9 N 1.46497 * 109.50730 * 180.87959 * 7 6 5 10 10 C 1.36939 * 119.99878 * 60.00233 * 9 7 6 11 11 H 1.07996 * 120.00206 * 19.75065 * 10 9 7 12 12 C 1.38812 * 119.99983 * 199.76057 * 10 9 7 13 13 N 1.31623 * 119.99977 * 21.99791 * 12 10 9 14 14 Si 1.86801 * 120.00006 * 202.00356 * 12 10 9 15 15 H 1.48499 * 109.47171 * 59.99476 * 14 12 10 16 16 H 1.48502 * 109.47007 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46617 * 299.99614 * 14 12 10 18 18 C 1.46501 * 120.00238 * 240.00025 * 9 7 6 19 19 C 1.47210 * 109.46897 * 83.93716 * 18 9 7 20 20 N 6.45744 * 155.66736 * 248.19797 * 2 1 3 21 21 C 1.53096 * 109.49224 * 239.91032 * 2 1 3 22 22 H 1.09003 * 109.47734 * 299.89968 * 1 2 3 23 23 H 1.09001 * 109.47142 * 59.90497 * 1 2 3 24 24 H 1.09003 * 109.47211 * 179.89947 * 1 2 3 25 25 H 1.09000 * 109.46389 * 59.10837 * 4 2 1 26 26 H 1.09002 * 109.46187 * 299.12353 * 4 2 1 27 27 H 1.00900 * 110.99541 * 62.36056 * 5 4 2 28 28 H 1.08996 * 109.46232 * 181.75800 * 6 5 4 29 29 H 1.09006 * 109.46382 * 301.73776 * 6 5 4 30 30 H 0.96998 * 119.99785 * 180.02562 * 13 12 10 31 31 H 1.08992 * 109.47285 * 203.93778 * 18 9 7 32 32 H 1.08997 * 109.46961 * 323.94499 * 18 9 7 33 33 H 1.08997 * 109.52590 * 62.49212 * 21 2 1 34 34 H 1.08999 * 109.57386 * 302.33284 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0409 -0.7234 1.2481 5 7 3.5093 -0.7420 1.2377 6 6 4.0228 -1.4728 0.0721 7 6 3.5708 -0.7717 -1.2110 8 1 3.9679 0.2432 -1.2303 9 7 4.0656 -1.5129 -2.3737 10 6 3.6953 -2.8177 -2.5623 11 1 2.8179 -3.2069 -2.0673 12 6 4.4478 -3.6401 -3.3895 13 7 5.7050 -3.3449 -3.6436 14 14 3.6760 -5.1656 -4.1421 15 1 2.5190 -4.7706 -4.9851 16 1 4.6816 -5.8672 -4.9798 17 1 3.2136 -6.0715 -3.0601 18 6 4.9566 -0.8581 -3.3348 19 6 6.3436 -0.9315 -2.8469 20 7 7.4138 -0.9882 -2.4704 21 6 2.0408 -0.7236 -1.2487 22 1 -0.3635 0.5123 0.8909 23 1 -0.3633 0.5153 -0.8891 24 1 -0.3634 -1.0277 -0.0018 25 1 1.6648 -1.7464 1.2544 26 1 1.6906 -0.2021 2.1390 27 1 3.8829 0.1947 1.2706 28 1 5.1118 -1.4960 0.1089 29 1 3.6372 -2.4923 0.0839 30 1 6.2307 -3.9194 -4.2220 31 1 4.8836 -1.3610 -4.2990 32 1 4.6657 0.1863 -3.4467 33 1 1.7151 -0.1868 -2.1397 34 1 1.6449 -1.7389 -1.2701 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401949621.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:13 Heat of formation + Delta-G solvation = 21.725249 kcal Electronic energy + Delta-G solvation = -15884.153967 eV Core-core repulsion = 13430.442546 eV Total energy + Delta-G solvation = -2453.711421 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.18518 -37.66867 -36.05068 -33.86171 -33.40457 -30.83595 -28.40386 -27.26605 -25.36995 -24.00603 -21.77663 -21.09093 -19.02460 -17.64054 -17.07860 -16.59954 -15.98191 -15.80297 -15.58266 -15.01919 -14.57124 -14.15018 -13.69613 -13.35071 -13.22476 -13.05416 -12.92285 -12.85414 -12.65660 -12.53500 -12.31700 -12.10633 -11.94227 -11.89319 -11.68139 -11.29034 -11.22154 -10.60104 -9.43434 -8.76125 -7.91273 -5.28816 1.51050 1.54391 1.59544 2.27553 2.51360 2.61313 3.27929 3.40686 3.73451 3.91035 3.96791 4.16671 4.24260 4.33228 4.51055 4.65328 4.72480 4.83499 4.90976 4.99427 5.05446 5.16537 5.21623 5.26729 5.33610 5.43239 5.53383 5.61604 5.71634 6.09090 6.31870 6.59811 7.07387 7.33721 7.79903 8.20681 9.14966 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.024712 B = 0.010482 C = 0.008452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.759161 B = 2670.604882 C = 3311.987800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.120 4.120 3 H 0.077 0.923 4 C 0.064 3.936 5 N -0.691 5.691 6 C 0.066 3.934 7 C 0.140 3.860 8 H 0.067 0.933 9 N -0.585 5.585 10 C -0.248 4.248 11 H 0.078 0.922 12 C -0.042 4.042 13 N -0.928 5.928 14 Si 0.958 3.042 15 H -0.272 1.272 16 H -0.305 1.305 17 H -0.286 1.286 18 C 0.258 3.742 19 C 0.259 3.741 20 N -0.548 5.548 21 C -0.109 4.109 22 H 0.068 0.932 23 H 0.057 0.943 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.092 0.908 27 H 0.344 0.656 28 H 0.033 0.967 29 H 0.049 0.951 30 H 0.248 0.752 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.063 0.937 34 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.671 8.435 4.539 15.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.141 4.141 3 H 0.095 0.905 4 C -0.065 4.065 5 N -0.319 5.319 6 C -0.065 4.065 7 C 0.032 3.968 8 H 0.086 0.914 9 N -0.306 5.306 10 C -0.378 4.378 11 H 0.096 0.904 12 C -0.238 4.238 13 N -0.574 5.574 14 Si 0.788 3.212 15 H -0.198 1.198 16 H -0.232 1.232 17 H -0.212 1.212 18 C 0.128 3.872 19 C -0.059 4.059 20 N -0.230 5.230 21 C -0.148 4.148 22 H 0.087 0.913 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.110 0.890 27 H 0.161 0.839 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.112 0.888 32 H 0.123 0.877 33 H 0.081 0.919 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.961 7.696 5.441 13.713 hybrid contribution -0.214 -0.870 -1.440 1.696 sum -10.175 6.826 4.001 12.889 Atomic orbital electron populations 1.21692 0.93704 1.01737 1.02303 1.21863 0.97264 0.99722 0.95224 0.90465 1.22129 0.86584 1.00412 0.97386 1.60673 1.08512 1.21494 1.41267 1.22149 0.97512 0.97819 0.89053 1.21351 0.94374 0.94537 0.86518 0.91448 1.44291 1.52368 1.10062 1.23848 1.19271 1.06032 0.87401 1.25092 0.90442 1.25459 0.94955 1.00446 1.02940 1.70037 1.06343 1.40727 1.40288 0.85473 0.77454 0.79944 0.78314 1.19822 1.23196 1.21202 1.18522 0.77141 0.97688 0.93861 1.31190 0.95801 0.87852 0.91033 1.80794 1.15456 1.14600 1.12167 1.21896 0.95032 1.00135 0.97727 0.91253 0.92406 0.93307 0.92470 0.89010 0.83857 0.94866 0.93221 0.94270 0.88771 0.87735 0.91856 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.20 71.98 0.66 -1.88 16 2 C -0.12 -2.70 2.87 -10.75 -0.03 -2.73 16 3 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 4 C 0.06 1.55 5.84 86.32 0.50 2.06 16 5 N -0.69 -20.23 6.87 -514.00 -3.53 -23.76 16 6 C 0.07 2.46 5.82 86.33 0.50 2.96 16 7 C 0.14 4.87 2.77 45.04 0.12 4.99 16 8 H 0.07 2.15 7.88 -2.38 -0.02 2.13 16 9 N -0.59 -24.85 2.43 -688.21 -1.67 -26.52 16 10 C -0.25 -11.94 8.34 84.03 0.70 -11.24 16 11 H 0.08 3.70 6.83 -2.91 -0.02 3.68 16 12 C -0.04 -2.16 4.82 84.86 0.41 -1.75 16 13 N -0.93 -51.11 9.60 21.65 0.21 -50.90 16 14 Si 0.96 42.58 29.61 68.60 2.03 44.61 16 15 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 16 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 17 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 18 C 0.26 10.53 5.35 84.58 0.45 10.98 16 19 C 0.26 12.28 13.57 89.45 1.21 13.49 16 20 N -0.55 -28.41 18.54 20.01 0.37 -28.04 16 21 C -0.11 -3.21 4.57 30.67 0.14 -3.07 16 22 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.34 8.82 8.86 -89.69 -0.79 8.02 16 28 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.05 2.11 7.63 -2.38 -0.02 2.09 16 30 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 31 H 0.09 4.18 6.61 -2.39 -0.02 4.16 16 32 H 0.11 3.27 8.05 -2.39 -0.02 3.25 16 33 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.05 1.59 6.91 -2.39 -0.02 1.58 16 Total: -1.00 -60.36 277.72 2.38 -57.98 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.29 Total: 12.81 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: 4.68 Total: 13.82 kcal Atomic # 7 Polarization: -124.60 SS G_CDS: -4.62 Total: -129.23 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -60.36 2.38 -57.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401949621.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.707 kcal (2) G-P(sol) polarization free energy of solvation -60.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds