Wall clock time and date at job start Mon Mar 30 2020 02:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 112.84676 * 2 1 4 4 C 1.53957 * 113.53477 * 228.69169 * 2 1 3 5 5 H 1.08995 * 113.66675 * 25.34309 * 4 2 1 6 6 N 1.46902 * 113.60926 * 156.28775 * 4 2 1 7 7 C 1.53775 * 87.01623 * 270.80778 * 4 2 1 8 8 C 1.53776 * 113.61429 * 131.19500 * 2 1 3 9 9 H 1.09004 * 113.61361 * 203.66691 * 8 2 1 10 10 N 1.46498 * 113.61638 * 334.57012 * 8 2 1 11 11 C 1.36937 * 120.00297 * 77.34465 * 10 8 2 12 12 H 1.08005 * 119.99792 * 322.44982 * 11 10 8 13 13 C 1.38808 * 120.00312 * 142.45140 * 11 10 8 14 14 N 1.31623 * 119.99924 * 163.12429 * 13 11 10 15 15 Si 1.86796 * 120.00209 * 343.12335 * 13 11 10 16 16 H 1.48493 * 109.47277 * 93.99828 * 15 13 11 17 17 H 1.48497 * 109.47091 * 214.00289 * 15 13 11 18 18 H 1.48508 * 109.46765 * 334.00007 * 15 13 11 19 19 C 1.46501 * 119.99775 * 257.34088 * 10 8 2 20 20 C 1.47197 * 109.46986 * 83.87324 * 19 10 8 21 21 N 4.04107 * 73.89625 * 60.85567 * 2 1 3 22 22 H 1.08995 * 109.47054 * 277.88753 * 1 2 3 23 23 H 1.09000 * 109.47413 * 37.89438 * 1 2 3 24 24 H 1.09006 * 109.46687 * 157.89241 * 1 2 3 25 25 H 1.09004 * 109.47148 * 191.19707 * 3 2 1 26 26 H 1.09002 * 109.47173 * 311.19911 * 3 2 1 27 27 H 1.09000 * 109.46954 * 71.19690 * 3 2 1 28 28 H 1.00896 * 110.99847 * 176.92270 * 6 4 2 29 29 H 1.00892 * 111.00389 * 300.88667 * 6 4 2 30 30 H 1.09006 * 113.61362 * 220.04375 * 7 4 2 31 31 H 1.09004 * 113.61330 * 89.23928 * 7 4 2 32 32 H 0.97001 * 119.99842 * 180.02562 * 14 13 11 33 33 H 1.09003 * 109.46761 * 203.87059 * 19 10 8 34 34 H 1.08992 * 109.47513 * 323.87182 * 19 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1448 -0.9318 -1.0603 5 1 1.4924 -1.1134 -1.9143 6 7 3.5096 -0.5564 -1.4531 7 6 2.0930 -2.0424 0.0020 8 6 2.1460 -0.9280 1.0602 9 1 3.1591 -0.6485 1.3496 10 7 1.2704 -1.1683 2.2099 11 6 0.2244 -2.0455 2.1024 12 1 -0.3427 -2.0998 1.1848 13 6 -0.1071 -2.8649 3.1727 14 7 -1.2824 -3.4562 3.2095 15 14 1.1148 -3.1284 4.5608 16 1 0.8428 -2.1572 5.6507 17 1 0.9784 -4.5112 5.0844 18 1 2.4947 -2.9261 4.0505 19 6 1.5139 -0.4701 3.4746 20 6 0.8904 0.8625 3.4273 21 7 0.4092 1.8908 3.3910 22 1 -0.3633 0.1410 1.0179 23 1 -0.3634 0.8110 -0.6312 24 1 -0.3633 -0.9522 -0.3868 25 1 3.1942 1.3534 -0.1996 26 1 1.6414 2.0076 -0.7732 27 1 1.9599 1.8733 0.9728 28 1 3.8921 -1.2197 -2.1102 29 1 3.5332 0.3797 -1.8290 30 1 2.9718 -2.6874 0.0025 31 1 1.1575 -2.6019 0.0034 32 1 -1.5142 -4.0285 3.9576 33 1 1.0831 -1.0439 4.2951 34 1 2.5874 -0.3636 3.6301 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405266274.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:00 Heat of formation + Delta-G solvation = 79.926878 kcal Electronic energy + Delta-G solvation = -16250.379902 eV Core-core repulsion = 13799.192293 eV Total energy + Delta-G solvation = -2451.187609 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.66132 -36.15111 -34.50970 -31.88335 -31.31087 -29.76517 -27.08953 -26.62418 -24.51664 -21.72619 -21.04443 -18.13462 -17.26773 -16.07421 -15.64122 -15.46155 -15.10096 -14.33069 -13.76317 -13.39446 -13.34745 -12.69749 -12.40307 -12.19578 -11.94644 -11.64145 -11.56050 -11.50283 -11.22691 -10.94872 -10.76799 -10.35528 -10.16132 -9.98253 -9.91197 -9.60945 -9.30595 -8.67433 -8.33801 -7.03183 -6.08032 -3.58490 3.18404 3.37721 3.40034 3.51916 3.63725 4.38927 4.70960 4.89693 5.00813 5.04609 5.19620 5.38237 5.62128 5.70381 5.90450 5.96570 5.98423 6.12403 6.22239 6.23581 6.37683 6.46813 6.57889 6.70322 6.78702 6.97651 7.13329 7.19064 7.51541 7.62686 7.90721 8.28510 8.40971 8.81749 9.56137 9.91677 11.05655 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.026736 B = 0.012346 C = 0.010450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.044381 B = 2267.347177 C = 2678.910125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.098 4.098 3 C -0.133 4.133 4 C 0.060 3.940 5 H 0.038 0.962 6 N -0.831 5.831 7 C -0.123 4.123 8 C 0.173 3.827 9 H 0.079 0.921 10 N -0.577 5.577 11 C -0.273 4.273 12 H 0.094 0.906 13 C 0.037 3.963 14 N -0.896 5.896 15 Si 0.871 3.129 16 H -0.283 1.283 17 H -0.298 1.298 18 H -0.260 1.260 19 C 0.210 3.790 20 C 0.207 3.793 21 N -0.476 5.476 22 H 0.077 0.923 23 H 0.029 0.971 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.038 0.962 27 H 0.050 0.950 28 H 0.336 0.664 29 H 0.337 0.663 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.266 0.734 33 H 0.094 0.906 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.737 3.235 -5.874 11.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.101 4.101 3 C -0.191 4.191 4 C -0.051 4.051 5 H 0.056 0.944 6 N -0.361 5.361 7 C -0.161 4.161 8 C 0.066 3.934 9 H 0.097 0.903 10 N -0.296 5.296 11 C -0.401 4.401 12 H 0.111 0.889 13 C -0.164 4.164 14 N -0.536 5.536 15 Si 0.701 3.299 16 H -0.211 1.211 17 H -0.226 1.226 18 H -0.185 1.185 19 C 0.080 3.920 20 C -0.113 4.113 21 N -0.156 5.156 22 H 0.096 0.904 23 H 0.048 0.952 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.148 0.852 29 H 0.151 0.849 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.082 4.488 -5.072 10.544 hybrid contribution 0.218 -0.498 -0.143 0.562 sum 8.300 3.990 -5.216 10.584 Atomic orbital electron populations 1.21535 0.92772 0.99893 1.02849 1.22565 0.96010 0.93997 0.97560 1.21668 1.00499 0.96011 1.00882 1.22537 0.88321 0.98834 0.95443 0.94370 1.58617 1.21564 1.06704 1.49251 1.23269 1.02805 0.96001 0.94061 1.21952 0.92189 0.94109 0.85163 0.90292 1.44137 1.32589 1.45320 1.07577 1.18868 1.06023 1.12460 1.02790 0.88860 1.25511 0.96137 0.96368 0.98407 1.69796 1.19180 1.32719 1.31927 0.87030 0.83775 0.76738 0.82320 1.21105 1.22575 1.18464 1.19192 0.97764 0.82327 0.92734 1.31390 0.92864 0.95279 0.91722 1.80966 1.10682 1.13959 1.09945 0.90432 0.95228 0.92574 0.91962 0.94242 0.93137 0.85200 0.84942 0.92241 0.87874 0.92436 0.88845 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.14 7.63 37.16 0.28 -1.85 16 2 C -0.10 -1.66 1.34 -153.60 -0.21 -1.86 16 3 C -0.13 -2.07 8.69 37.16 0.32 -1.75 16 4 C 0.06 0.91 4.44 -66.81 -0.30 0.61 16 5 H 0.04 0.58 8.10 -51.93 -0.42 0.16 16 6 N -0.83 -10.29 8.67 -3.90 -0.03 -10.32 16 7 C -0.12 -2.14 6.82 -25.92 -0.18 -2.31 16 8 C 0.17 3.16 3.83 -67.12 -0.26 2.90 16 9 H 0.08 1.40 8.06 -51.93 -0.42 0.98 16 10 N -0.58 -12.10 1.60 -168.05 -0.27 -12.37 16 11 C -0.27 -6.70 7.16 -15.06 -0.11 -6.80 16 12 H 0.09 2.46 5.26 -52.48 -0.28 2.18 16 13 C 0.04 0.97 5.36 -17.43 -0.09 0.87 16 14 N -0.90 -25.42 13.97 55.49 0.78 -24.65 16 15 Si 0.87 19.78 24.72 -169.99 -4.20 15.58 16 16 H -0.28 -6.22 6.68 56.52 0.38 -5.84 16 17 H -0.30 -7.05 7.11 56.52 0.40 -6.64 16 18 H -0.26 -5.58 7.07 56.52 0.40 -5.18 16 19 C 0.21 4.12 4.71 -6.83 -0.03 4.09 16 20 C 0.21 4.26 15.19 -20.76 -0.32 3.94 16 21 N -0.48 -10.34 18.54 42.15 0.78 -9.56 16 22 H 0.08 1.72 6.29 -51.93 -0.33 1.39 16 23 H 0.03 0.51 7.99 -51.93 -0.41 0.10 16 24 H 0.06 1.09 6.41 -51.93 -0.33 0.75 16 25 H 0.06 0.88 6.36 -51.93 -0.33 0.55 16 26 H 0.04 0.58 8.06 -51.93 -0.42 0.16 16 27 H 0.05 0.87 7.97 -51.93 -0.41 0.46 16 28 H 0.34 3.55 9.08 -39.29 -0.36 3.19 16 29 H 0.34 3.75 7.59 -39.30 -0.30 3.45 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.10 2.03 5.92 -51.93 -0.31 1.72 16 32 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 33 H 0.09 1.97 3.13 -51.93 -0.16 1.81 16 34 H 0.09 1.39 8.08 -51.93 -0.42 0.97 16 LS Contribution 268.29 15.07 4.04 4.04 Total: -1.00 -27.56 268.29 -4.27 -31.82 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -4.48 Total: 7.63 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -0.88 Total: -2.17 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: 1.25 Total: -56.91 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.20 Total: 15.58 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.56 -4.27 -31.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405266274.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.749 kcal (2) G-P(sol) polarization free energy of solvation -27.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds