Wall clock time and date at job start Mon Mar 30 2020 02:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.37099 * 120.00064 * 2 1 4 4 H 1.08001 * 119.99944 * 139.87880 * 3 2 1 5 5 C 1.38952 * 120.00069 * 319.87667 * 3 2 1 6 6 N 1.31410 * 120.00147 * 160.77286 * 5 3 2 7 7 Si 1.86795 * 119.99938 * 340.77503 * 5 3 2 8 8 H 1.48499 * 109.47016 * 93.24567 * 7 5 3 9 9 H 1.48499 * 109.47209 * 213.24287 * 7 5 3 10 10 H 1.48502 * 109.47349 * 333.24866 * 7 5 3 11 11 C 1.34775 * 120.00018 * 180.02562 * 2 1 3 12 12 O 1.21300 * 120.00106 * 185.54721 * 11 2 1 13 13 C 1.50699 * 120.00110 * 5.54296 * 11 2 1 14 14 C 1.52306 * 115.29117 * 147.65823 * 13 11 2 15 15 C 1.52075 * 115.92675 * 79.57974 * 13 11 2 16 16 H 1.08996 * 117.25396 * 359.72219 * 15 13 11 17 17 C 1.52709 * 120.52337 * 209.99176 * 15 13 11 18 18 C 1.52876 * 110.15194 * 21.47545 * 17 15 13 19 19 C 1.53303 * 108.57866 * 305.47660 * 18 17 15 20 20 C 1.52061 * 114.64146 * 292.96411 * 13 11 2 21 21 H 1.08995 * 109.47266 * 266.12051 * 1 2 3 22 22 H 1.09002 * 109.47607 * 26.12308 * 1 2 3 23 23 H 1.09002 * 109.47167 * 146.12407 * 1 2 3 24 24 H 0.96991 * 120.00306 * 180.02562 * 6 5 3 25 25 H 1.09002 * 117.54070 * 0.58416 * 14 13 11 26 26 H 1.09004 * 117.53906 * 145.81831 * 14 13 11 27 27 H 1.08996 * 109.35961 * 261.26548 * 17 15 13 28 28 H 1.08998 * 109.24404 * 141.60880 * 17 15 13 29 29 H 1.08996 * 109.62033 * 185.75219 * 18 17 15 30 30 H 1.09001 * 109.77087 * 65.29080 * 18 17 15 31 31 H 1.08998 * 109.62181 * 314.71131 * 19 18 17 32 32 H 1.09005 * 109.76599 * 194.26078 * 19 18 17 33 33 H 1.09006 * 109.26728 * 287.11404 * 20 13 11 34 34 H 1.09006 * 109.27176 * 46.57790 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.0398 1.2973 0.6027 5 6 1.7009 2.2491 -0.7755 6 7 2.1003 3.4724 -0.5094 7 14 0.5289 1.9375 -2.1962 8 1 -0.8709 2.1006 -1.7280 9 1 0.8027 2.9086 -3.2858 10 1 0.7230 0.5557 -2.7042 11 6 2.1388 -1.1672 -0.0005 12 8 3.3475 -1.1697 0.1010 13 6 1.3906 -2.4692 -0.1272 14 6 2.1344 -3.5785 -0.8591 15 6 0.9593 -2.8541 -1.5337 16 1 1.2150 -2.1666 -2.3399 17 6 -0.3013 -3.6864 -1.7580 18 6 -1.2311 -3.5699 -0.5501 19 6 -0.4461 -3.9542 0.7094 20 6 0.5035 -2.8087 1.0603 21 1 -0.3633 -0.0695 1.0252 22 1 -0.3634 0.9227 -0.4525 23 1 -0.3633 -0.8532 -0.5728 24 1 1.7863 4.2136 -1.0504 25 1 3.1381 -3.3578 -1.2225 26 1 1.9696 -4.6024 -0.5235 27 1 -0.0240 -4.7307 -1.9011 28 1 -0.8172 -3.3245 -2.6473 29 1 -2.0779 -4.2449 -0.6737 30 1 -1.5903 -2.5449 -0.4589 31 1 0.1284 -4.8609 0.5202 32 1 -1.1359 -4.1240 1.5362 33 1 1.1283 -3.1047 1.9030 34 1 -0.0795 -1.9301 1.3366 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693247243.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:54 Heat of formation + Delta-G solvation = -9.879688 kcal Electronic energy + Delta-G solvation = -16252.286297 eV Core-core repulsion = 13764.911632 eV Total energy + Delta-G solvation = -2487.374665 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.20231 -37.43781 -34.82588 -32.78827 -32.00569 -30.66069 -26.54540 -25.50278 -24.33542 -22.67104 -21.08001 -19.47914 -17.93668 -17.04593 -16.39371 -15.64203 -14.46690 -14.41004 -14.03658 -13.87822 -13.72261 -13.18311 -12.73397 -12.64204 -12.18284 -12.04990 -11.75389 -11.69908 -11.35717 -10.84617 -10.76944 -10.70072 -10.42869 -10.25028 -9.94149 -9.54802 -9.41153 -8.97788 -8.40189 -7.65808 -6.36028 -3.97001 3.04153 3.21964 3.27348 3.61662 4.06361 4.16673 4.48193 4.81014 4.93104 4.93993 5.03840 5.18828 5.33331 5.41840 5.50940 5.65532 5.72237 5.77321 5.87949 6.00072 6.04816 6.07691 6.17758 6.21151 6.27944 6.32742 6.39157 6.48510 6.54471 6.56858 7.59946 8.33454 8.56241 8.99250 9.34829 9.82582 10.76166 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.034128 B = 0.010794 C = 0.009757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.249505 B = 2593.430443 C = 2869.071656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.467 5.467 3 C -0.317 4.317 4 H 0.104 0.896 5 C 0.059 3.941 6 N -0.868 5.868 7 Si 0.881 3.119 8 H -0.275 1.275 9 H -0.289 1.289 10 H -0.264 1.264 11 C 0.498 3.502 12 O -0.562 6.562 13 C -0.125 4.125 14 C -0.153 4.153 15 C -0.140 4.140 16 H 0.102 0.898 17 C -0.085 4.085 18 C -0.122 4.122 19 C -0.118 4.118 20 C -0.084 4.084 21 H 0.049 0.951 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.273 0.727 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.370 -13.212 -1.276 16.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.189 5.189 3 C -0.444 4.444 4 H 0.121 0.879 5 C -0.146 4.146 6 N -0.505 5.505 7 Si 0.709 3.291 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.188 1.188 11 C 0.285 3.715 12 O -0.443 6.443 13 C -0.129 4.129 14 C -0.191 4.191 15 C -0.159 4.159 16 H 0.120 0.880 17 C -0.123 4.123 18 C -0.159 4.159 19 C -0.155 4.155 20 C -0.122 4.122 21 H 0.068 0.932 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.118 0.882 26 H 0.112 0.888 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.743 -12.965 -1.265 15.689 hybrid contribution -0.643 0.170 -0.795 1.037 sum -9.386 -12.795 -2.061 16.002 Atomic orbital electron populations 1.22109 0.83546 1.01588 1.00759 1.43553 1.03972 1.05440 1.65891 1.19061 1.12068 0.86442 1.26859 0.87870 1.25391 0.97370 0.94810 0.97066 1.69731 1.44174 0.98467 1.38096 0.86908 0.80248 0.79029 0.82949 1.20196 1.21555 1.18805 1.19490 0.87171 0.83750 0.81053 1.90545 1.14205 1.86775 1.52788 1.21047 1.01813 0.96121 0.93920 1.23091 0.97152 0.95799 1.03025 1.22295 0.96276 1.02208 0.95104 0.88015 1.21039 0.94219 0.98977 0.98055 1.21607 0.97526 1.01901 0.94882 1.21591 0.98017 0.98292 0.97609 1.20894 0.96655 0.98982 0.95654 0.93231 0.91929 0.92092 0.91642 0.88235 0.88759 0.91647 0.91740 0.92066 0.91428 0.91927 0.91778 0.91421 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.30 7.68 59.84 0.46 1.76 16 2 N -0.47 -11.72 2.54 -122.20 -0.31 -12.03 16 3 C -0.32 -9.27 9.36 -14.93 -0.14 -9.41 16 4 H 0.10 3.39 7.92 -52.49 -0.42 2.98 16 5 C 0.06 1.67 5.32 -17.47 -0.09 1.58 16 6 N -0.87 -25.66 13.96 55.50 0.77 -24.89 16 7 Si 0.88 21.01 25.03 -169.99 -4.25 16.76 16 8 H -0.27 -6.07 6.63 56.52 0.37 -5.70 16 9 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 11 C 0.50 12.11 6.73 -10.99 -0.07 12.04 16 12 O -0.56 -15.95 16.39 5.54 0.09 -15.86 16 13 C -0.13 -2.29 1.29 -156.96 -0.20 -2.49 16 14 C -0.15 -2.50 9.08 -26.75 -0.24 -2.75 16 15 C -0.14 -2.25 4.98 -90.90 -0.45 -2.71 16 16 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 17 C -0.09 -1.05 5.83 -26.94 -0.16 -1.20 16 18 C -0.12 -1.37 5.92 -26.64 -0.16 -1.53 16 19 C -0.12 -1.36 5.70 -26.64 -0.15 -1.51 16 20 C -0.08 -1.27 5.18 -27.28 -0.14 -1.41 16 21 H 0.05 0.90 7.11 -51.93 -0.37 0.53 16 22 H 0.06 1.35 3.53 -51.93 -0.18 1.16 16 23 H 0.06 1.09 4.86 -51.93 -0.25 0.83 16 24 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.10 1.80 7.84 -51.93 -0.41 1.40 16 26 H 0.09 1.28 7.26 -51.93 -0.38 0.90 16 27 H 0.06 0.71 8.06 -51.93 -0.42 0.29 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.81 6.89 -51.93 -0.36 0.45 16 31 H 0.06 0.69 7.11 -51.93 -0.37 0.32 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.16 5.49 -51.93 -0.28 0.87 16 LS Contribution 260.89 15.07 3.93 3.93 Total: -1.00 -32.36 260.89 -5.83 -38.19 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -4.71 Total: 1.54 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -1.35 Total: -7.64 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.46 Total: -36.92 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.09 Total: -15.86 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.25 Total: 16.76 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.36 -5.83 -38.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693247243.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.309 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds