Wall clock time and date at job start Mon Mar 30 2020 02:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30859 * 125.81961 * 2 1 4 4 N 1.40074 * 108.36313 * 180.02562 * 3 2 1 5 5 C 1.46496 * 126.07579 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.46953 * 305.02984 * 5 4 3 7 7 C 1.53006 * 109.47127 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47127 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47055 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00290 * 0.02562 * 9 8 7 11 11 C 1.37887 * 120.00079 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99685 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00129 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47011 * 90.00204 * 13 11 9 15 15 H 1.48498 * 109.47112 * 210.00472 * 13 11 9 16 16 H 1.48499 * 109.47134 * 330.00583 * 13 11 9 17 17 C 1.35979 * 107.85488 * 0.24317 * 4 3 2 18 18 C 1.35708 * 107.55063 * 359.61027 * 17 4 3 19 19 N 1.40800 * 126.06579 * 180.14731 * 18 17 4 20 20 H 1.08991 * 109.46800 * 89.97344 * 1 2 3 21 21 H 1.09005 * 109.47012 * 209.97669 * 1 2 3 22 22 H 1.08997 * 109.46959 * 329.97204 * 1 2 3 23 23 H 1.08996 * 109.47565 * 185.03024 * 5 4 3 24 24 H 1.09001 * 109.47062 * 65.02488 * 5 4 3 25 25 H 1.09001 * 109.47502 * 60.00124 * 6 5 4 26 26 H 1.09001 * 109.47289 * 299.99920 * 6 5 4 27 27 H 1.09001 * 109.47002 * 299.99574 * 7 6 5 28 28 H 1.08993 * 109.46955 * 60.00011 * 7 6 5 29 29 H 1.09001 * 109.47289 * 299.99953 * 8 7 6 30 30 H 1.09004 * 109.47261 * 59.99697 * 8 7 6 31 31 H 0.96999 * 119.99910 * 179.97438 * 12 11 9 32 32 H 1.07997 * 126.21920 * 179.74862 * 17 4 3 33 33 H 0.97002 * 119.99556 * 180.28435 * 19 18 17 34 34 H 0.96996 * 119.99732 * 0.27695 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2729 1.0611 0.0000 4 7 3.6091 0.6409 -0.0006 5 6 4.7872 1.5116 -0.0013 6 6 4.7046 2.4804 -1.1826 7 6 5.9347 3.3903 -1.1831 8 6 5.8518 4.3595 -2.3640 9 6 7.0630 5.2560 -2.3640 10 1 7.8169 5.1453 -1.5986 11 6 7.2095 6.2170 -3.3420 12 7 6.2918 6.3514 -4.2744 13 14 8.7113 7.3278 -3.3424 14 1 9.7908 6.7005 -4.1464 15 1 8.3543 8.6426 -3.9334 16 1 9.1827 7.5235 -1.9479 17 6 3.6186 -0.7188 -0.0064 18 6 2.3276 -1.1371 -0.0006 19 7 1.8898 -2.4753 -0.0008 20 1 -0.3632 0.0005 -1.0276 21 1 -0.3633 -0.8902 0.5135 22 1 -0.3633 0.8897 0.5143 23 1 5.6878 0.9044 -0.0918 24 1 4.8220 2.0767 0.9301 25 1 3.8040 3.0877 -1.0922 26 1 4.6698 1.9154 -2.1141 27 1 5.9690 3.9553 -0.2516 28 1 6.8355 2.7833 -1.2733 29 1 5.8172 3.7948 -3.2957 30 1 4.9509 4.9664 -2.2734 31 1 6.3946 7.0277 -4.9621 32 1 4.4943 -1.3509 -0.0122 33 1 0.9405 -2.6750 -0.0005 34 1 2.5374 -3.1974 -0.0014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697701596.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:28 Heat of formation + Delta-G solvation = 51.747168 kcal Electronic energy + Delta-G solvation = -14431.531034 eV Core-core repulsion = 11979.121461 eV Total energy + Delta-G solvation = -2452.409573 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.94374 -35.79406 -34.16904 -33.00661 -32.01504 -29.73387 -28.18409 -26.94292 -24.34584 -21.98646 -20.91326 -20.14810 -19.54851 -16.84579 -16.21701 -16.04665 -15.37737 -14.91919 -14.47674 -14.36929 -13.75523 -13.20339 -12.91419 -12.48300 -12.28353 -12.04836 -11.83732 -11.69706 -11.07445 -10.76365 -10.64055 -10.57007 -10.42933 -10.31705 -9.67223 -9.36658 -9.09089 -8.90009 -8.32686 -7.09791 -5.97424 -4.00112 2.07310 2.69155 3.01665 3.33138 3.39279 3.42642 4.09209 4.47337 4.71903 4.89971 5.15397 5.30799 5.34102 5.38142 5.57580 5.58423 5.65341 5.79045 5.94121 6.11438 6.14039 6.43257 6.59227 6.75665 6.90928 7.09998 7.25217 7.63185 7.70521 7.80805 7.85109 8.02914 8.04399 8.44679 9.07278 9.63762 11.13920 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.063706 B = 0.004098 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.416400 B = 6830.928457 C = 7050.904371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.021 3.979 3 N -0.266 5.266 4 N -0.360 5.360 5 C 0.140 3.860 6 C -0.129 4.129 7 C -0.108 4.108 8 C 0.021 3.979 9 C -0.521 4.521 10 H 0.055 0.945 11 C 0.056 3.944 12 N -0.895 5.895 13 Si 0.892 3.108 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.274 1.274 17 C -0.031 4.031 18 C 0.053 3.947 19 N -0.878 5.878 20 H 0.071 0.929 21 H 0.067 0.933 22 H 0.072 0.928 23 H 0.092 0.908 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.015 0.985 30 H 0.017 0.983 31 H 0.260 0.740 32 H 0.166 0.834 33 H 0.394 0.606 34 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.069 -16.458 9.099 20.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.147 4.147 3 N -0.091 5.091 4 N -0.147 5.147 5 C 0.019 3.981 6 C -0.167 4.167 7 C -0.146 4.146 8 C -0.016 4.016 9 C -0.560 4.560 10 H 0.073 0.927 11 C -0.145 4.145 12 N -0.535 5.535 13 Si 0.720 3.280 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.179 4.179 18 C -0.056 4.056 19 N -0.426 5.426 20 H 0.090 0.910 21 H 0.086 0.914 22 H 0.091 0.909 23 H 0.110 0.890 24 H 0.099 0.901 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.033 0.967 30 H 0.035 0.965 31 H 0.070 0.930 32 H 0.183 0.817 33 H 0.221 0.779 34 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -7.913 -14.895 8.958 19.097 hybrid contribution 0.864 -0.638 -0.164 1.086 sum -7.049 -15.533 8.794 19.190 Atomic orbital electron populations 1.20031 0.87185 1.02680 1.02514 1.21999 0.96672 0.89572 1.06481 1.77188 0.87010 1.22438 1.22433 1.48390 1.04874 1.03952 1.57521 1.21906 0.82689 0.92305 1.01197 1.21970 1.01348 0.97302 0.96084 1.21595 0.94462 0.97216 1.01318 1.19083 0.97135 0.93255 0.92115 1.21269 1.06358 1.16870 1.11466 0.92689 1.25042 0.96407 0.97481 0.95603 1.69972 1.34095 1.34470 1.14924 0.86596 0.83120 0.80110 0.78184 1.20698 1.21225 1.19874 1.21715 0.97538 0.85487 1.13138 1.17532 0.91424 0.86276 1.10363 1.41417 1.08805 1.01980 1.90372 0.91004 0.91374 0.90942 0.89018 0.90125 0.90975 0.92053 0.93079 0.93264 0.96662 0.96502 0.93014 0.81674 0.77879 0.78014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.29 36.01 0.37 -0.29 16 2 C 0.02 0.29 7.22 -82.26 -0.59 -0.30 16 3 N -0.27 -4.45 12.41 33.74 0.42 -4.03 16 4 N -0.36 -5.53 3.71 -61.00 -0.23 -5.75 16 5 C 0.14 2.01 6.52 -4.05 -0.03 1.99 16 6 C -0.13 -2.29 5.40 -26.73 -0.14 -2.43 16 7 C -0.11 -2.20 5.15 -26.73 -0.14 -2.33 16 8 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 9 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 10 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 13 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 17 C -0.03 -0.41 11.53 -16.62 -0.19 -0.60 16 18 C 0.05 0.67 7.21 -83.89 -0.60 0.06 16 19 N -0.88 -7.76 9.20 32.30 0.30 -7.46 16 20 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.07 0.52 7.68 -51.93 -0.40 0.12 16 22 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.09 1.10 8.07 -51.93 -0.42 0.68 16 24 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.39 2.79 8.34 -40.82 -0.34 2.45 16 34 H 0.39 2.72 8.96 -40.82 -0.37 2.36 16 LS Contribution 292.77 15.07 4.41 4.41 Total: -1.00 -33.28 292.77 -6.55 -39.84 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -5.29 Total: 0.13 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -1.88 Total: -17.27 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 1.23 Total: -43.98 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.28 -6.55 -39.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697701596.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.584 kcal (2) G-P(sol) polarization free energy of solvation -33.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds