Wall clock time and date at job start Mon Mar 30 2020 03:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53637 * 1 3 3 C 1.55375 * 112.32891 * 2 1 4 4 C 1.55085 * 99.57106 * 161.51199 * 3 2 1 5 5 H 1.09667 * 111.63533 * 199.12069 * 4 3 2 6 6 C 1.52872 * 106.74352 * 76.27270 * 4 3 2 7 7 C 1.51794 * 113.62261 * 303.47324 * 6 4 3 8 8 C 1.54918 * 107.11666 * 151.18240 * 7 6 4 9 9 C 1.53605 * 109.67500 * 266.24871 * 7 6 4 10 10 C 1.51656 * 115.97991 * 31.55271 * 7 6 4 11 11 N 1.47522 * 105.13654 * 320.33496 * 4 3 2 12 12 C 1.37011 * 126.02284 * 203.27365 * 11 4 3 13 13 H 1.08002 * 120.00468 * 359.50000 * 12 11 4 14 14 C 1.38817 * 119.99649 * 179.21932 * 12 11 4 15 15 N 1.31614 * 119.99888 * 0.27505 * 14 12 11 16 16 Si 1.86803 * 119.99862 * 180.27697 * 14 12 11 17 17 H 1.48508 * 109.46872 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47141 * 119.99997 * 16 14 12 19 19 H 1.48498 * 109.47018 * 240.00044 * 16 14 12 20 20 C 1.47110 * 108.24417 * 22.82121 * 11 4 3 21 21 H 1.08999 * 109.46987 * 304.78299 * 1 2 3 22 22 H 1.09000 * 109.47135 * 64.78110 * 1 2 3 23 23 H 1.09001 * 109.46919 * 184.78135 * 1 2 3 24 24 H 1.08946 * 111.34849 * 279.08651 * 3 2 1 25 25 H 1.08894 * 111.36812 * 43.93081 * 3 2 1 26 26 H 1.09949 * 108.91159 * 65.19589 * 6 4 3 27 27 H 1.09907 * 109.08787 * 181.47970 * 6 4 3 28 28 H 1.09000 * 109.47376 * 60.00122 * 8 7 6 29 29 H 1.09002 * 109.47063 * 180.02562 * 8 7 6 30 30 H 1.09004 * 109.47231 * 299.99910 * 8 7 6 31 31 H 1.08992 * 109.47541 * 59.99934 * 9 7 6 32 32 H 1.09002 * 109.47081 * 180.02562 * 9 7 6 33 33 H 1.09009 * 109.47213 * 299.99796 * 9 7 6 34 34 H 1.10222 * 108.84365 * 208.03721 * 10 7 6 35 35 H 1.10190 * 108.82896 * 92.76396 * 10 7 6 36 36 H 0.97005 * 119.99715 * 179.97438 * 15 14 12 37 37 H 1.08508 * 110.98413 * 124.71994 * 20 11 4 38 38 H 1.09384 * 109.46413 * 245.75261 * 20 11 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5364 0.0000 0.0000 3 6 2.1267 1.4372 0.0000 4 6 3.5662 1.1248 0.4849 5 1 4.0639 2.0198 0.8773 6 6 4.3127 0.5270 -0.7077 7 6 3.6403 -0.7019 -1.2923 8 6 4.0063 -0.7497 -2.7969 9 6 4.2378 -1.9681 -0.6605 10 6 2.1272 -0.7398 -1.1972 11 7 3.4064 0.0911 1.5252 12 6 4.2929 -0.1808 2.5339 13 1 5.2114 0.3819 2.6120 14 6 4.0077 -1.1757 3.4591 15 7 2.8883 -1.8614 3.3641 16 14 5.2126 -1.5411 4.8389 17 1 6.3858 -0.6379 4.7238 18 1 4.5466 -1.3239 6.1482 19 1 5.6638 -2.9526 4.7412 20 6 2.1237 -0.5934 1.3011 21 1 -0.3633 0.5863 0.8440 22 1 -0.3633 0.4379 -0.9297 23 1 -0.3633 -1.0241 0.0857 24 1 2.1291 1.8650 -1.0020 25 1 1.6019 2.0817 0.7036 26 1 4.4034 1.2927 -1.4915 27 1 5.3343 0.2656 -0.3980 28 1 5.0888 -0.8159 -2.9056 29 1 3.5406 -1.6215 -3.2566 30 1 3.6465 0.1549 -3.2872 31 1 4.0776 -1.9467 0.4174 32 1 3.7530 -2.8484 -1.0828 33 1 5.3072 -2.0080 -0.8681 34 1 1.7989 -1.7915 -1.1629 35 1 1.7021 -0.3160 -2.1212 36 1 2.6892 -2.5568 4.0103 37 1 2.2661 -1.6650 1.2079 38 1 1.4487 -0.3854 2.1364 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019852207.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:36 Heat of formation + Delta-G solvation = 7.658442 kcal Electronic energy + Delta-G solvation = -17034.000107 eV Core-core repulsion = 14683.219047 eV Total energy + Delta-G solvation = -2350.781060 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.72622 -34.74934 -33.10316 -31.49209 -28.87882 -26.52263 -26.29518 -25.64102 -24.91409 -22.78408 -19.87725 -18.75080 -17.63633 -16.53260 -14.70846 -14.35800 -13.90025 -13.62716 -13.44983 -13.03153 -12.90448 -12.19281 -12.17036 -11.77817 -11.48858 -11.40395 -11.32704 -10.98975 -10.94904 -10.74642 -10.65552 -10.54418 -10.33689 -9.90523 -9.71435 -9.47707 -9.25313 -9.22444 -9.05946 -8.52287 -6.70497 -5.62648 -2.94349 3.43412 3.49485 3.51390 4.55848 5.18628 5.22927 5.38048 5.56231 5.60727 5.66998 5.80929 5.89642 5.93262 6.05498 6.15982 6.17958 6.24956 6.32174 6.35161 6.39852 6.40822 6.50197 6.55125 6.65241 6.68271 6.72652 6.80069 6.99559 7.11700 7.15639 7.20268 7.46080 7.68814 7.77056 7.98345 8.35723 9.31766 9.92324 10.61627 11.48503 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.030243 B = 0.011343 C = 0.010048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.621967 B = 2467.868257 C = 2785.828497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.095 4.095 3 C -0.123 4.123 4 C 0.159 3.841 5 H 0.054 0.946 6 C -0.113 4.113 7 C -0.037 4.037 8 C -0.145 4.145 9 C -0.145 4.145 10 C -0.079 4.079 11 N -0.594 5.594 12 C -0.217 4.217 13 H 0.075 0.925 14 C -0.009 4.009 15 N -0.921 5.921 16 Si 0.905 3.095 17 H -0.281 1.281 18 H -0.293 1.293 19 H -0.292 1.292 20 C 0.193 3.807 21 H 0.053 0.947 22 H 0.044 0.956 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.038 0.962 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.096 0.904 32 H 0.033 0.967 33 H 0.036 0.964 34 H 0.050 0.950 35 H 0.040 0.960 36 H 0.250 0.750 37 H 0.058 0.942 38 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.605 3.129 -9.410 10.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.095 4.095 3 C -0.161 4.161 4 C 0.051 3.949 5 H 0.072 0.928 6 C -0.153 4.153 7 C -0.038 4.038 8 C -0.203 4.203 9 C -0.202 4.202 10 C -0.116 4.116 11 N -0.318 5.318 12 C -0.346 4.346 13 H 0.093 0.907 14 C -0.205 4.205 15 N -0.569 5.569 16 Si 0.737 3.263 17 H -0.207 1.207 18 H -0.220 1.220 19 H -0.220 1.220 20 C 0.068 3.932 21 H 0.072 0.928 22 H 0.063 0.937 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.115 0.885 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -1.565 2.963 -9.229 9.819 hybrid contribution 0.689 -0.338 0.673 1.021 sum -0.876 2.625 -8.556 8.993 Atomic orbital electron populations 1.21593 0.94626 1.01228 1.00459 1.21982 0.93890 0.95684 0.97987 1.22895 0.97626 0.96194 0.99372 1.21262 0.93308 0.91711 0.88648 0.92773 1.22056 0.99703 0.95786 0.97726 1.20085 0.94343 0.96147 0.93179 1.22542 1.00492 1.00374 0.96842 1.22256 0.98299 0.94852 1.04775 1.21379 0.94028 0.99743 0.96499 1.44497 1.20214 1.37648 1.29438 1.19077 0.98682 1.14535 1.02289 0.90679 1.24729 0.97525 0.99097 0.99177 1.69969 1.23858 1.25664 1.37450 0.86131 0.80209 0.77699 0.82298 1.20659 1.21975 1.21954 1.21235 0.86014 0.96137 0.89816 0.92770 0.93724 0.92971 0.92395 0.92270 0.94358 0.92924 0.93449 0.93602 0.93609 0.88541 0.94768 0.94471 0.93140 0.94141 0.93997 0.92381 0.95490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.99 9.00 37.49 0.34 -1.65 16 2 C -0.09 -1.79 1.07 -152.27 -0.16 -1.95 16 3 C -0.12 -2.24 5.70 -24.37 -0.14 -2.38 16 4 C 0.16 3.28 4.06 -66.33 -0.27 3.01 16 5 H 0.05 1.12 8.20 -51.55 -0.42 0.69 16 6 C -0.11 -2.10 4.41 -27.41 -0.12 -2.22 16 7 C -0.04 -0.67 0.62 -154.48 -0.10 -0.76 16 8 C -0.15 -2.15 7.65 38.17 0.29 -1.86 16 9 C -0.14 -2.86 7.70 37.47 0.29 -2.57 16 10 C -0.08 -1.39 3.68 -27.60 -0.10 -1.49 16 11 N -0.59 -14.70 2.02 -162.00 -0.33 -15.03 16 12 C -0.22 -5.94 9.96 -15.02 -0.15 -6.09 16 13 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 14 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 15 N -0.92 -26.81 10.34 55.49 0.57 -26.23 16 16 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 20 C 0.19 4.62 3.51 -2.87 -0.01 4.61 16 21 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 22 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.94 7.94 -51.96 -0.41 0.52 16 25 H 0.06 1.09 8.13 -51.99 -0.42 0.66 16 26 H 0.04 0.63 7.68 -51.39 -0.39 0.23 16 27 H 0.05 1.04 7.83 -51.41 -0.40 0.64 16 28 H 0.05 0.68 8.11 -51.93 -0.42 0.25 16 29 H 0.04 0.64 8.13 -51.93 -0.42 0.22 16 30 H 0.04 0.63 8.00 -51.93 -0.42 0.21 16 31 H 0.10 2.33 5.14 -51.93 -0.27 2.06 16 32 H 0.03 0.62 7.90 -51.93 -0.41 0.21 16 33 H 0.04 0.69 8.07 -51.92 -0.42 0.27 16 34 H 0.05 0.91 7.70 -51.23 -0.39 0.51 16 35 H 0.04 0.64 7.72 -51.25 -0.40 0.24 16 36 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 37 H 0.06 1.55 5.85 -52.20 -0.31 1.24 16 38 H 0.03 0.73 7.57 -51.71 -0.39 0.34 16 LS Contribution 280.62 15.07 4.23 4.23 Total: -1.00 -28.34 280.62 -7.49 -35.82 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -6.71 Total: -2.26 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -0.23 Total: -13.72 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.25 Total: -41.26 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.34 -7.49 -35.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019852207.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.483 kcal (2) G-P(sol) polarization free energy of solvation -28.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds