Wall clock time and date at job start Mon Mar 30 2020 03:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53637 * 1 3 3 C 1.55375 * 112.32891 * 2 1 4 4 C 1.55085 * 99.57106 * 161.51199 * 3 2 1 5 5 H 1.09667 * 111.63533 * 199.12069 * 4 3 2 6 6 C 1.52872 * 106.74352 * 76.27270 * 4 3 2 7 7 C 1.51794 * 113.62261 * 303.47324 * 6 4 3 8 8 C 1.54918 * 107.11666 * 151.18240 * 7 6 4 9 9 C 1.53605 * 109.67500 * 266.24871 * 7 6 4 10 10 C 1.51656 * 115.97991 * 31.55271 * 7 6 4 11 11 N 1.47522 * 105.13654 * 320.33496 * 4 3 2 12 12 C 1.37011 * 126.02284 * 203.27365 * 11 4 3 13 13 H 1.08002 * 120.00468 * 359.50000 * 12 11 4 14 14 C 1.38817 * 119.99649 * 179.21932 * 12 11 4 15 15 N 1.31614 * 119.99888 * 0.27505 * 14 12 11 16 16 Si 1.86803 * 119.99862 * 180.27697 * 14 12 11 17 17 H 1.48508 * 109.46872 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47141 * 119.99997 * 16 14 12 19 19 H 1.48498 * 109.47018 * 240.00044 * 16 14 12 20 20 C 1.47110 * 108.24417 * 22.82121 * 11 4 3 21 21 H 1.08999 * 109.46987 * 304.78299 * 1 2 3 22 22 H 1.09000 * 109.47135 * 64.78110 * 1 2 3 23 23 H 1.09001 * 109.46919 * 184.78135 * 1 2 3 24 24 H 1.08946 * 111.34849 * 279.08651 * 3 2 1 25 25 H 1.08894 * 111.36812 * 43.93081 * 3 2 1 26 26 H 1.09949 * 108.91159 * 65.19589 * 6 4 3 27 27 H 1.09907 * 109.08787 * 181.47970 * 6 4 3 28 28 H 1.09000 * 109.47376 * 60.00122 * 8 7 6 29 29 H 1.09002 * 109.47063 * 180.02562 * 8 7 6 30 30 H 1.09004 * 109.47231 * 299.99910 * 8 7 6 31 31 H 1.08992 * 109.47541 * 59.99934 * 9 7 6 32 32 H 1.09002 * 109.47081 * 180.02562 * 9 7 6 33 33 H 1.09009 * 109.47213 * 299.99796 * 9 7 6 34 34 H 1.10222 * 108.84365 * 208.03721 * 10 7 6 35 35 H 1.10190 * 108.82896 * 92.76396 * 10 7 6 36 36 H 0.97005 * 119.99715 * 179.97438 * 15 14 12 37 37 H 1.08508 * 110.98413 * 124.71994 * 20 11 4 38 38 H 1.09384 * 109.46413 * 245.75261 * 20 11 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5364 0.0000 0.0000 3 6 2.1267 1.4372 0.0000 4 6 3.5662 1.1248 0.4849 5 1 4.0639 2.0198 0.8773 6 6 4.3127 0.5270 -0.7077 7 6 3.6403 -0.7019 -1.2923 8 6 4.0063 -0.7497 -2.7969 9 6 4.2378 -1.9681 -0.6605 10 6 2.1272 -0.7398 -1.1972 11 7 3.4064 0.0911 1.5252 12 6 4.2929 -0.1808 2.5339 13 1 5.2114 0.3819 2.6120 14 6 4.0077 -1.1757 3.4591 15 7 2.8883 -1.8614 3.3641 16 14 5.2126 -1.5411 4.8389 17 1 6.3858 -0.6379 4.7238 18 1 4.5466 -1.3239 6.1482 19 1 5.6638 -2.9526 4.7412 20 6 2.1237 -0.5934 1.3011 21 1 -0.3633 0.5863 0.8440 22 1 -0.3633 0.4379 -0.9297 23 1 -0.3633 -1.0241 0.0857 24 1 2.1291 1.8650 -1.0020 25 1 1.6019 2.0817 0.7036 26 1 4.4034 1.2927 -1.4915 27 1 5.3343 0.2656 -0.3980 28 1 5.0888 -0.8159 -2.9056 29 1 3.5406 -1.6215 -3.2566 30 1 3.6465 0.1549 -3.2872 31 1 4.0776 -1.9467 0.4174 32 1 3.7530 -2.8484 -1.0828 33 1 5.3072 -2.0080 -0.8681 34 1 1.7989 -1.7915 -1.1629 35 1 1.7021 -0.3160 -2.1212 36 1 2.6892 -2.5568 4.0103 37 1 2.2661 -1.6650 1.2079 38 1 1.4487 -0.3854 2.1364 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019852207.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:36 Heat of formation + Delta-G solvation = -7.093650 kcal Electronic energy + Delta-G solvation = -17034.639806 eV Core-core repulsion = 14683.219047 eV Total energy + Delta-G solvation = -2351.420759 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.29447 -36.35497 -34.86531 -33.25329 -30.72522 -28.00722 -27.70847 -27.23954 -26.54197 -24.63008 -21.48866 -20.34990 -19.30224 -18.45374 -16.39371 -16.28877 -15.44940 -15.26474 -15.02083 -14.51827 -14.37220 -13.75542 -13.66189 -13.26140 -13.18820 -13.15231 -12.93476 -12.71494 -12.53290 -12.27973 -12.25696 -12.16996 -11.87288 -11.77099 -11.51345 -11.08357 -10.83709 -10.74275 -10.64601 -10.57497 -8.73333 -7.76273 -5.08188 1.44391 1.44666 1.54314 2.52519 3.40896 3.67891 3.75971 3.94264 4.04682 4.21153 4.38294 4.40854 4.47018 4.67488 4.73652 4.84441 4.88593 4.92481 4.97803 5.01216 5.06339 5.07874 5.12632 5.16938 5.24940 5.29743 5.38660 5.47087 5.56940 5.61329 5.63924 5.71509 5.83257 5.87600 6.01475 6.30437 7.20374 7.90028 8.57127 9.33506 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.030243 B = 0.011343 C = 0.010048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.621967 B = 2467.868257 C = 2785.828497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.089 4.089 3 C -0.110 4.110 4 C 0.143 3.857 5 H 0.051 0.949 6 C -0.106 4.106 7 C -0.042 4.042 8 C -0.136 4.136 9 C -0.139 4.139 10 C -0.079 4.079 11 N -0.609 5.609 12 C -0.221 4.221 13 H 0.075 0.925 14 C -0.066 4.066 15 N -0.949 5.949 16 Si 0.965 3.035 17 H -0.268 1.268 18 H -0.296 1.296 19 H -0.296 1.296 20 C 0.206 3.794 21 H 0.046 0.954 22 H 0.080 0.920 23 H 0.048 0.952 24 H 0.096 0.904 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.031 0.969 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.039 0.961 34 H 0.040 0.960 35 H 0.077 0.923 36 H 0.242 0.758 37 H 0.021 0.979 38 H -0.019 1.019 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.607 4.498 -12.053 12.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.090 4.090 3 C -0.148 4.148 4 C 0.036 3.964 5 H 0.069 0.931 6 C -0.146 4.146 7 C -0.043 4.043 8 C -0.193 4.193 9 C -0.196 4.196 10 C -0.116 4.116 11 N -0.333 5.333 12 C -0.350 4.350 13 H 0.093 0.907 14 C -0.258 4.258 15 N -0.599 5.599 16 Si 0.795 3.205 17 H -0.193 1.193 18 H -0.224 1.224 19 H -0.224 1.224 20 C 0.081 3.919 21 H 0.065 0.935 22 H 0.099 0.901 23 H 0.067 0.933 24 H 0.114 0.886 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.051 0.949 37 H 0.039 0.961 38 H -0.001 1.001 Dipole moment (debyes) X Y Z Total from point charges -1.551 4.366 -11.900 12.770 hybrid contribution 0.724 -0.747 1.507 1.831 sum -0.826 3.619 -10.393 11.036 Atomic orbital electron populations 1.21573 0.92506 1.01351 1.02035 1.21967 0.95543 0.95944 0.95565 1.22865 0.95207 0.95576 1.01162 1.21587 0.95638 0.90692 0.88457 0.93054 1.21938 0.98101 0.96958 0.97560 1.20126 0.94409 0.94283 0.95432 1.22429 1.00967 1.02025 0.93895 1.22163 0.98872 0.96902 1.01680 1.21362 0.93850 0.99332 0.97047 1.44713 1.19999 1.38724 1.29895 1.19371 0.99008 1.13897 1.02743 0.90730 1.25442 0.99188 0.99569 1.01633 1.70194 1.25533 1.26200 1.38022 0.85188 0.78700 0.77239 0.79381 1.19265 1.22358 1.22369 1.20938 0.85233 0.94493 0.91226 0.93491 0.90133 0.93336 0.88593 0.92739 0.90879 0.95030 0.93130 0.92604 0.91342 0.93551 0.94034 0.94183 0.94074 0.90487 0.94895 0.96063 1.00136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.58 9.00 72.20 0.65 -2.93 16 2 C -0.09 -3.25 1.07 -50.73 -0.05 -3.30 16 3 C -0.11 -3.71 5.70 32.12 0.18 -3.53 16 4 C 0.14 5.73 4.06 45.47 0.18 5.91 16 5 H 0.05 2.07 8.20 -2.03 -0.02 2.05 16 6 C -0.11 -3.69 4.41 30.16 0.13 -3.56 16 7 C -0.04 -1.41 0.62 -52.16 -0.03 -1.44 16 8 C -0.14 -3.41 7.65 72.64 0.56 -2.85 16 9 C -0.14 -5.48 7.70 72.19 0.56 -4.92 16 10 C -0.08 -2.54 3.68 30.03 0.11 -2.43 16 11 N -0.61 -30.91 2.02 -666.46 -1.34 -32.25 16 12 C -0.22 -12.44 9.96 84.02 0.84 -11.60 16 13 H 0.07 4.10 7.83 -2.91 -0.02 4.07 16 14 C -0.07 -3.81 5.49 84.86 0.47 -3.34 16 15 N -0.95 -58.22 10.34 21.65 0.22 -58.00 16 16 Si 0.96 47.16 29.55 68.60 2.03 49.18 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 19 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 20 C 0.21 10.24 3.51 86.81 0.30 10.54 16 21 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.10 2.56 7.94 -2.42 -0.02 2.54 16 25 H 0.05 1.88 8.13 -2.44 -0.02 1.86 16 26 H 0.07 2.06 7.68 -1.88 -0.01 2.05 16 27 H 0.03 1.21 7.83 -1.90 -0.01 1.20 16 28 H 0.05 1.24 8.11 -2.39 -0.02 1.22 16 29 H 0.05 1.30 8.13 -2.39 -0.02 1.28 16 30 H 0.07 1.44 8.00 -2.38 -0.02 1.42 16 31 H 0.05 2.31 5.14 -2.39 -0.01 2.30 16 32 H 0.04 1.51 7.90 -2.39 -0.02 1.49 16 33 H 0.04 1.49 8.07 -2.38 -0.02 1.47 16 34 H 0.04 1.40 7.70 -1.73 -0.01 1.39 16 35 H 0.08 1.99 7.72 -1.75 -0.01 1.97 16 36 H 0.24 14.54 8.31 -92.70 -0.77 13.76 16 37 H 0.02 1.20 5.85 -2.65 -0.02 1.18 16 38 H -0.02 -1.12 7.57 -2.18 -0.02 -1.14 16 Total: -1.00 -64.69 280.62 5.82 -58.88 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: 1.02 Total: 5.63 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 3.89 Total: -23.45 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -1.12 Total: -90.25 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.18 kcal Total: -64.69 5.82 -58.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019852207.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.784 kcal (2) G-P(sol) polarization free energy of solvation -64.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds