Wall clock time and date at job start Mon Mar 30 2020 02:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46894 * 109.47090 * 2 1 4 4 C 1.46901 * 110.99663 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47297 * 180.02562 * 4 3 2 6 6 C 1.40135 * 126.01349 * 90.01964 * 5 4 3 7 7 C 1.50696 * 125.79602 * 359.97438 * 6 5 4 8 8 N 1.30938 * 108.40436 * 180.02562 * 6 5 4 9 9 N 1.40098 * 108.26388 * 0.02562 * 8 6 5 10 10 C 1.37398 * 126.11214 * 179.97438 * 9 8 6 11 11 H 1.08004 * 119.99454 * 174.12700 * 10 9 8 12 12 C 1.38987 * 120.00210 * 354.12556 * 10 9 8 13 13 N 1.31281 * 120.00131 * 5.92946 * 12 10 9 14 14 Si 1.86807 * 119.99901 * 185.92496 * 12 10 9 15 15 H 1.48496 * 109.47031 * 94.98102 * 14 12 10 16 16 H 1.48499 * 109.46941 * 214.98474 * 14 12 10 17 17 H 1.48504 * 109.47200 * 334.98366 * 14 12 10 18 18 C 1.35247 * 126.00736 * 269.71731 * 5 4 3 19 19 C 1.50697 * 126.20474 * 359.97438 * 18 5 4 20 20 H 1.09001 * 109.47217 * 300.00469 * 1 2 3 21 21 H 1.09005 * 109.46754 * 60.00044 * 1 2 3 22 22 H 1.08993 * 109.47596 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46778 * 239.99693 * 2 1 3 24 24 H 1.08997 * 109.46907 * 120.00239 * 2 1 3 25 25 H 1.00902 * 110.99940 * 303.94996 * 3 2 1 26 26 H 1.09004 * 109.47325 * 299.99612 * 4 3 2 27 27 H 1.08999 * 109.47473 * 60.00046 * 4 3 2 28 28 H 1.09000 * 109.46713 * 90.00035 * 7 6 5 29 29 H 1.08996 * 109.47092 * 209.99941 * 7 6 5 30 30 H 1.09003 * 109.47067 * 330.00049 * 7 6 5 31 31 H 0.97000 * 119.99867 * 180.02562 * 13 12 10 32 32 H 1.09004 * 109.47483 * 90.00233 * 19 18 5 33 33 H 1.09000 * 109.47153 * 210.00415 * 19 18 5 34 34 H 1.09006 * 109.47331 * 330.00230 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4881 1.4240 -0.0006 5 6 3.9525 2.8577 0.0000 6 6 4.2073 3.6408 1.1339 7 6 4.0629 3.1924 2.5654 8 7 4.5910 4.8285 0.7383 9 7 4.5939 4.8450 -0.6625 10 6 4.9370 5.9107 -1.4591 11 1 4.9958 5.7871 -2.5304 12 6 5.2082 7.1476 -0.8862 13 7 5.2511 7.2708 0.4201 14 14 5.5119 8.6348 -1.9751 15 1 4.2444 9.3891 -2.1477 16 1 6.5282 9.5129 -1.3416 17 1 6.0046 8.1847 -3.3018 18 6 4.2022 3.6131 -1.0937 19 6 4.0669 3.1736 -2.5288 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8899 25 1 1.6442 1.9012 -0.7814 26 1 3.8654 0.9200 0.8892 27 1 3.8647 0.9202 -0.8908 28 1 5.0056 2.7673 2.9097 29 1 3.8003 4.0469 3.1890 30 1 3.2783 2.4387 2.6326 31 1 5.4400 8.1342 0.8199 32 1 3.0566 3.3840 -2.8796 33 1 4.7853 3.7155 -3.1439 34 1 4.2611 2.1035 -2.6010 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036868543.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:43 Heat of formation + Delta-G solvation = 60.636876 kcal Electronic energy + Delta-G solvation = -15359.561449 eV Core-core repulsion = 12907.537363 eV Total energy + Delta-G solvation = -2452.024086 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.60990 -36.02899 -33.66875 -31.83457 -31.35808 -29.17583 -27.73267 -26.18908 -24.36010 -22.78086 -21.69610 -19.08859 -18.08702 -16.94544 -15.32015 -15.12374 -14.67719 -14.25483 -13.67252 -13.58203 -13.13808 -12.55545 -12.33860 -12.10271 -11.91517 -11.67937 -11.61935 -11.59145 -11.24448 -11.06190 -11.03815 -10.89391 -10.61009 -10.46741 -10.22292 -9.23737 -8.55497 -7.89199 -7.74181 -6.93554 -6.49700 -4.17163 2.98685 3.08092 3.12559 3.58397 3.87688 4.13001 4.76037 4.92766 5.07531 5.27608 5.44639 5.66334 5.88837 5.93206 6.07857 6.08466 6.12708 6.21420 6.26687 6.30948 6.39502 6.40608 6.57647 6.61279 6.70144 6.96785 7.12881 7.32261 7.62681 7.66193 7.95374 8.02470 8.33433 8.77911 9.51036 9.79053 10.47136 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.038818 B = 0.007224 C = 0.006546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.132710 B = 3874.950954 C = 4276.290119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.052 3.948 3 N -0.685 5.685 4 C 0.158 3.842 5 C -0.270 4.270 6 C -0.003 4.003 7 C -0.050 4.050 8 N -0.262 5.262 9 N -0.148 5.148 10 C -0.327 4.327 11 H 0.113 0.887 12 C 0.048 3.952 13 N -0.774 5.774 14 Si 0.930 3.070 15 H -0.272 1.272 16 H -0.277 1.277 17 H -0.265 1.265 18 C -0.025 4.025 19 C -0.063 4.063 20 H 0.061 0.939 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.019 0.981 24 H 0.066 0.934 25 H 0.338 0.662 26 H 0.061 0.939 27 H 0.016 0.984 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.272 0.728 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.181 -8.320 -2.679 9.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 N -0.316 5.316 4 C 0.029 3.971 5 C -0.284 4.284 6 C -0.159 4.159 7 C -0.108 4.108 8 N -0.092 5.092 9 N 0.085 4.915 10 C -0.458 4.458 11 H 0.131 0.869 12 C -0.168 4.168 13 N -0.401 5.401 14 Si 0.754 3.246 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.189 1.189 18 C -0.156 4.156 19 C -0.121 4.121 20 H 0.081 0.919 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.037 0.963 24 H 0.084 0.916 25 H 0.156 0.844 26 H 0.079 0.921 27 H 0.034 0.966 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.786 -6.882 -1.446 7.987 hybrid contribution 0.104 -0.267 -1.687 1.711 sum -3.682 -7.149 -3.133 8.630 Atomic orbital electron populations 1.21760 0.95656 1.00909 1.02300 1.21895 0.95153 0.91031 0.99701 1.60671 1.09409 1.11440 1.50128 1.19842 0.85543 0.93354 0.98346 1.18718 1.21224 0.96743 0.91727 1.21857 1.05753 0.93240 0.95045 1.19787 1.00222 0.99960 0.90870 1.78162 1.25428 1.17441 0.88158 1.44684 1.36551 1.06359 1.03883 1.19815 1.48794 0.86746 0.90487 0.86896 1.25584 0.95707 0.99383 0.96123 1.70219 1.35566 1.24846 1.09471 0.85886 0.78636 0.80328 0.79740 1.19705 1.20177 1.18867 1.20367 1.12006 0.88309 0.94959 1.19984 1.00834 0.99747 0.91563 0.91943 0.93091 0.92861 0.96265 0.91599 0.84438 0.92093 0.96569 0.93206 0.92718 0.92027 0.91720 0.92841 0.92474 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.17 37.16 0.38 -1.32 16 2 C 0.05 0.69 6.40 -3.83 -0.02 0.67 16 3 N -0.68 -11.50 6.49 -115.06 -0.75 -12.24 16 4 C 0.16 2.92 5.62 -4.98 -0.03 2.90 16 5 C -0.27 -6.23 5.62 -104.98 -0.59 -6.82 16 6 C 0.00 -0.06 7.22 -82.26 -0.59 -0.66 16 7 C -0.05 -1.02 10.11 36.00 0.36 -0.66 16 8 N -0.26 -7.61 10.44 33.74 0.35 -7.25 16 9 N -0.15 -4.15 3.73 -7.83 -0.03 -4.18 16 10 C -0.33 -8.87 9.97 -14.78 -0.15 -9.02 16 11 H 0.11 2.79 7.04 -52.48 -0.37 2.42 16 12 C 0.05 1.28 5.50 -17.51 -0.10 1.18 16 13 N -0.77 -21.99 11.84 55.49 0.66 -21.33 16 14 Si 0.93 19.44 29.56 -169.99 -5.02 14.41 16 15 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 16 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 17 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 18 C -0.03 -0.61 6.92 -81.69 -0.57 -1.17 16 19 C -0.06 -1.20 9.85 36.00 0.35 -0.85 16 20 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.34 5.75 8.72 -39.29 -0.34 5.41 16 26 H 0.06 1.09 7.91 -51.93 -0.41 0.68 16 27 H 0.02 0.29 7.14 -51.93 -0.37 -0.09 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 1.15 7.90 -51.93 -0.41 0.74 16 31 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.07 7.34 -51.93 -0.38 0.69 16 34 H 0.06 0.96 7.15 -51.93 -0.37 0.59 16 LS Contribution 287.42 15.07 4.33 4.33 Total: -1.00 -31.10 287.42 -6.58 -37.68 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.17 Total: 4.34 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -0.95 Total: -15.75 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: 0.23 Total: -45.01 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.10 -6.58 -37.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036868543.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.316 kcal (2) G-P(sol) polarization free energy of solvation -31.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds