Wall clock time and date at job start Mon Mar 30 2020 02:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46894 * 109.47090 * 2 1 4 4 C 1.46901 * 110.99663 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47297 * 180.02562 * 4 3 2 6 6 C 1.40135 * 126.01349 * 90.01964 * 5 4 3 7 7 C 1.50696 * 125.79602 * 359.97438 * 6 5 4 8 8 N 1.30938 * 108.40436 * 180.02562 * 6 5 4 9 9 N 1.40098 * 108.26388 * 0.02562 * 8 6 5 10 10 C 1.37398 * 126.11214 * 179.97438 * 9 8 6 11 11 H 1.08004 * 119.99454 * 174.12700 * 10 9 8 12 12 C 1.38987 * 120.00210 * 354.12556 * 10 9 8 13 13 N 1.31281 * 120.00131 * 5.92946 * 12 10 9 14 14 Si 1.86807 * 119.99901 * 185.92496 * 12 10 9 15 15 H 1.48496 * 109.47031 * 94.98102 * 14 12 10 16 16 H 1.48499 * 109.46941 * 214.98474 * 14 12 10 17 17 H 1.48504 * 109.47200 * 334.98366 * 14 12 10 18 18 C 1.35247 * 126.00736 * 269.71731 * 5 4 3 19 19 C 1.50697 * 126.20474 * 359.97438 * 18 5 4 20 20 H 1.09001 * 109.47217 * 300.00469 * 1 2 3 21 21 H 1.09005 * 109.46754 * 60.00044 * 1 2 3 22 22 H 1.08993 * 109.47596 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46778 * 239.99693 * 2 1 3 24 24 H 1.08997 * 109.46907 * 120.00239 * 2 1 3 25 25 H 1.00902 * 110.99940 * 303.94996 * 3 2 1 26 26 H 1.09004 * 109.47325 * 299.99612 * 4 3 2 27 27 H 1.08999 * 109.47473 * 60.00046 * 4 3 2 28 28 H 1.09000 * 109.46713 * 90.00035 * 7 6 5 29 29 H 1.08996 * 109.47092 * 209.99941 * 7 6 5 30 30 H 1.09003 * 109.47067 * 330.00049 * 7 6 5 31 31 H 0.97000 * 119.99867 * 180.02562 * 13 12 10 32 32 H 1.09004 * 109.47483 * 90.00233 * 19 18 5 33 33 H 1.09000 * 109.47153 * 210.00415 * 19 18 5 34 34 H 1.09006 * 109.47331 * 330.00230 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4881 1.4240 -0.0006 5 6 3.9525 2.8577 0.0000 6 6 4.2073 3.6408 1.1339 7 6 4.0629 3.1924 2.5654 8 7 4.5910 4.8285 0.7383 9 7 4.5939 4.8450 -0.6625 10 6 4.9370 5.9107 -1.4591 11 1 4.9958 5.7871 -2.5304 12 6 5.2082 7.1476 -0.8862 13 7 5.2511 7.2708 0.4201 14 14 5.5119 8.6348 -1.9751 15 1 4.2444 9.3891 -2.1477 16 1 6.5282 9.5129 -1.3416 17 1 6.0046 8.1847 -3.3018 18 6 4.2022 3.6131 -1.0937 19 6 4.0669 3.1736 -2.5288 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8899 25 1 1.6442 1.9012 -0.7814 26 1 3.8654 0.9200 0.8892 27 1 3.8647 0.9202 -0.8908 28 1 5.0056 2.7673 2.9097 29 1 3.8003 4.0469 3.1890 30 1 3.2783 2.4387 2.6326 31 1 5.4400 8.1342 0.8199 32 1 3.0566 3.3840 -2.8796 33 1 4.7853 3.7155 -3.1439 34 1 4.2611 2.1035 -2.6010 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036868543.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:42 Heat of formation + Delta-G solvation = 39.547046 kcal Electronic energy + Delta-G solvation = -15360.475973 eV Core-core repulsion = 12907.537363 eV Total energy + Delta-G solvation = -2452.938610 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.49043 -37.33597 -35.53015 -33.66369 -32.88441 -30.59402 -29.55279 -27.75539 -26.22107 -24.38529 -22.78550 -20.98467 -19.89169 -18.79839 -17.09857 -16.56465 -16.08740 -15.85536 -15.22921 -15.01903 -14.54980 -14.31768 -13.93125 -13.70819 -13.34411 -13.29819 -13.20908 -12.93399 -12.71008 -12.67598 -12.37722 -12.32812 -12.16069 -11.95054 -11.83682 -11.12815 -10.45455 -9.73140 -9.18352 -8.79224 -8.43196 -6.19677 1.30655 1.36914 1.53780 1.79396 2.13804 2.31083 2.91476 3.10404 3.65225 4.25903 4.28104 4.36583 4.44139 4.58776 4.63517 4.71124 4.75483 4.80246 4.87018 4.96110 4.98555 5.05885 5.06810 5.17283 5.20458 5.36161 5.39102 5.51602 5.85548 6.11183 6.32909 6.47294 6.62702 6.87109 7.60310 7.84553 8.56964 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.038818 B = 0.007224 C = 0.006546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.132710 B = 3874.950954 C = 4276.290119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.052 3.948 3 N -0.696 5.696 4 C 0.167 3.833 5 C -0.269 4.269 6 C -0.024 4.024 7 C -0.042 4.042 8 N -0.319 5.319 9 N -0.183 5.183 10 C -0.360 4.360 11 H 0.128 0.872 12 C -0.004 4.004 13 N -0.828 5.828 14 Si 1.012 2.988 15 H -0.268 1.268 16 H -0.275 1.275 17 H -0.246 1.246 18 C -0.033 4.033 19 C -0.058 4.058 20 H 0.052 0.948 21 H 0.051 0.949 22 H 0.075 0.925 23 H 0.031 0.969 24 H 0.070 0.930 25 H 0.335 0.665 26 H 0.067 0.933 27 H 0.031 0.969 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.273 0.727 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.857 -9.849 -4.072 11.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.077 4.077 3 N -0.328 5.328 4 C 0.038 3.962 5 C -0.283 4.283 6 C -0.181 4.181 7 C -0.101 4.101 8 N -0.149 5.149 9 N 0.049 4.951 10 C -0.490 4.490 11 H 0.146 0.854 12 C -0.215 4.215 13 N -0.457 5.457 14 Si 0.831 3.169 15 H -0.193 1.193 16 H -0.200 1.200 17 H -0.170 1.170 18 C -0.164 4.164 19 C -0.116 4.116 20 H 0.071 0.929 21 H 0.070 0.930 22 H 0.094 0.906 23 H 0.049 0.951 24 H 0.089 0.911 25 H 0.153 0.847 26 H 0.086 0.914 27 H 0.049 0.951 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.470 -8.439 -2.855 9.967 hybrid contribution 0.252 0.010 -1.221 1.247 sum -4.219 -8.428 -4.076 10.269 Atomic orbital electron populations 1.21726 0.94282 1.02293 1.01857 1.21980 0.96249 0.88966 1.00471 1.60586 1.08148 1.13779 1.50274 1.19764 0.86780 0.90295 0.99367 1.19292 1.19747 0.98654 0.90590 1.22665 1.04994 0.92868 0.97552 1.19837 1.01760 1.00127 0.88364 1.78035 1.27366 1.19818 0.89686 1.44955 1.38626 1.07796 1.03679 1.20379 1.49751 0.87492 0.91358 0.85414 1.26739 0.94766 1.02464 0.97505 1.70394 1.37852 1.25608 1.11815 0.84690 0.78461 0.75628 0.78122 1.19276 1.20003 1.16954 1.21364 1.10019 0.87307 0.97702 1.20090 1.01854 1.01290 0.88402 0.92925 0.93014 0.90569 0.95051 0.91118 0.84722 0.91422 0.95131 0.91589 0.93500 0.89945 0.91762 0.91199 0.92394 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 10.17 71.98 0.73 -2.15 16 2 C 0.05 1.22 6.40 86.30 0.55 1.78 16 3 N -0.70 -21.67 6.49 -517.95 -3.36 -25.03 16 4 C 0.17 5.77 5.62 85.56 0.48 6.25 16 5 C -0.27 -12.20 5.62 -20.09 -0.11 -12.31 16 6 C -0.02 -1.20 7.22 43.15 0.31 -0.89 16 7 C -0.04 -1.73 10.11 71.23 0.72 -1.01 16 8 N -0.32 -19.14 10.44 -47.17 -0.49 -19.63 16 9 N -0.18 -10.45 3.73 -178.70 -0.67 -11.11 16 10 C -0.36 -19.91 9.97 84.00 0.84 -19.07 16 11 H 0.13 6.34 7.04 -2.91 -0.02 6.32 16 12 C 0.00 -0.22 5.50 84.95 0.47 0.25 16 13 N -0.83 -49.00 11.84 21.66 0.26 -48.75 16 14 Si 1.01 40.38 29.56 68.60 2.03 42.41 16 15 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 16 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 17 H -0.25 -8.97 7.11 99.48 0.71 -8.27 16 18 C -0.03 -1.58 6.92 41.18 0.29 -1.29 16 19 C -0.06 -2.10 9.85 71.24 0.70 -1.40 16 20 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 21 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 22 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.34 10.69 8.72 -89.69 -0.78 9.90 16 26 H 0.07 2.25 7.91 -2.39 -0.02 2.23 16 27 H 0.03 0.97 7.14 -2.39 -0.02 0.95 16 28 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.08 2.96 7.90 -2.39 -0.02 2.94 16 31 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 32 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.06 2.07 7.34 -2.39 -0.02 2.05 16 34 H 0.08 2.56 7.15 -2.38 -0.02 2.55 16 Total: -1.00 -69.78 287.42 3.04 -66.74 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.30 Total: 25.22 kcal Atomic # 6 Polarization: -34.82 SS G_CDS: 4.98 Total: -29.84 kcal Atomic # 7 Polarization: -100.26 SS G_CDS: -4.27 Total: -104.52 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Total: -69.78 3.04 -66.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036868543.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.288 kcal (2) G-P(sol) polarization free energy of solvation -69.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds