Wall clock time and date at job start Mon Mar 30 2020 02:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 N 1.46899 * 109.47226 * 2 1 4 4 C 1.46906 * 111.00186 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.47123 * 179.97438 * 4 3 2 6 6 C 1.39867 * 126.04128 * 259.99603 * 5 4 3 7 7 N 1.30837 * 108.20476 * 179.74387 * 6 5 4 8 8 N 1.40095 * 108.20217 * 0.40282 * 7 6 5 9 9 C 1.46491 * 126.03486 * 179.85648 * 8 7 6 10 10 C 1.50702 * 109.46957 * 269.68919 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99985 * 180.27663 * 12 10 9 14 14 Si 1.86800 * 119.99777 * 0.28166 * 12 10 9 15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10 16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10 18 18 C 1.34941 * 107.92341 * 359.59377 * 8 7 6 19 19 C 1.50705 * 126.12578 * 180.26347 * 18 8 7 20 20 H 1.08997 * 109.47274 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47600 * 300.00220 * 1 2 3 22 22 H 1.09000 * 109.47580 * 60.00108 * 1 2 3 23 23 H 1.08998 * 109.47600 * 239.99779 * 2 1 3 24 24 H 1.09008 * 109.47255 * 119.99915 * 2 1 3 25 25 H 1.00890 * 111.00359 * 56.04350 * 3 2 1 26 26 H 1.09001 * 109.47066 * 59.99837 * 4 3 2 27 27 H 1.09000 * 109.46727 * 300.00092 * 4 3 2 28 28 H 1.08000 * 125.89676 * 0.02562 * 6 5 4 29 29 H 1.09004 * 109.47166 * 149.69185 * 9 8 7 30 30 H 1.08994 * 109.47507 * 29.68891 * 9 8 7 31 31 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 32 32 H 1.09000 * 109.47007 * 89.97345 * 19 18 8 33 33 H 1.09003 * 109.47141 * 209.97638 * 19 18 8 34 34 H 1.08996 * 109.46583 * 329.96920 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4242 -0.0006 5 6 3.9523 2.8579 -0.0012 6 6 4.3923 3.5800 -1.1154 7 7 4.7047 4.7881 -0.7222 8 7 4.4818 4.8703 0.6585 9 6 4.7072 6.0487 1.4991 10 6 6.1157 6.0219 2.0343 11 1 6.7770 5.2087 1.7739 12 6 6.5622 7.0388 2.8514 13 7 7.7931 7.0183 3.3140 14 14 5.4186 8.4457 3.3014 15 1 4.6812 8.1059 4.5447 16 1 6.2147 9.6802 3.5196 17 1 4.4509 8.6695 2.1974 18 6 4.0173 3.6742 1.0761 19 6 3.6382 3.3124 2.4891 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 1.6441 1.9013 0.7812 26 1 3.8647 0.9203 -0.8908 27 1 3.8653 0.9201 0.8891 28 1 4.4581 3.2063 -2.1265 29 1 4.0024 6.0419 2.3307 30 1 4.5609 6.9514 0.9062 31 1 8.1070 7.7335 3.8891 32 1 2.5840 3.5372 2.6513 33 1 3.8119 2.2485 2.6508 34 1 4.2445 3.8897 3.1870 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042355734.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:36 Heat of formation + Delta-G solvation = 63.533995 kcal Electronic energy + Delta-G solvation = -15041.969582 eV Core-core repulsion = 12590.071124 eV Total energy + Delta-G solvation = -2451.898458 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.55713 -36.43311 -33.75847 -32.13652 -32.00717 -29.96649 -27.58097 -26.61639 -23.93077 -22.62674 -21.99348 -19.87680 -18.57785 -17.13268 -16.10951 -15.35791 -15.06589 -14.47570 -14.20572 -13.95049 -13.51747 -13.37521 -12.63574 -12.45836 -12.29826 -12.16284 -12.00392 -11.71389 -11.58397 -11.26925 -11.18131 -10.94559 -10.72511 -10.28660 -9.80226 -9.71170 -8.80601 -8.38240 -8.31923 -7.57728 -6.28548 -4.31904 2.68070 3.12589 3.20804 3.22528 3.36983 3.52002 4.19881 4.50665 4.98931 5.02139 5.16607 5.27723 5.37737 5.42519 5.52357 5.62625 5.71105 5.79105 5.89024 5.92652 6.07899 6.08561 6.27961 6.30032 6.49119 6.72678 6.82903 7.15233 7.27256 7.41252 7.51241 7.84337 8.29304 8.57409 8.76543 9.26809 10.83963 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.045385 B = 0.006034 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.800715 B = 4639.549924 C = 4820.278468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 N -0.687 5.687 4 C 0.148 3.852 5 C -0.264 4.264 6 C 0.042 3.958 7 N -0.297 5.297 8 N -0.324 5.324 9 C 0.229 3.771 10 C -0.542 4.542 11 H 0.080 0.920 12 C 0.079 3.921 13 N -0.886 5.886 14 Si 0.873 3.127 15 H -0.271 1.271 16 H -0.279 1.279 17 H -0.263 1.263 18 C 0.096 3.904 19 C -0.093 4.093 20 H 0.056 0.944 21 H 0.051 0.949 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.024 0.976 25 H 0.339 0.661 26 H 0.072 0.928 27 H 0.028 0.972 28 H 0.170 0.830 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.269 0.731 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.194 -10.840 -2.664 16.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.078 4.078 3 N -0.319 5.319 4 C 0.019 3.981 5 C -0.277 4.277 6 C -0.143 4.143 7 N -0.119 5.119 8 N -0.104 5.104 9 C 0.110 3.890 10 C -0.580 4.580 11 H 0.098 0.902 12 C -0.125 4.125 13 N -0.523 5.523 14 Si 0.699 3.301 15 H -0.196 1.196 16 H -0.204 1.204 17 H -0.188 1.188 18 C -0.036 4.036 19 C -0.152 4.152 20 H 0.075 0.925 21 H 0.070 0.930 22 H 0.081 0.919 23 H 0.087 0.913 24 H 0.043 0.957 25 H 0.157 0.843 26 H 0.091 0.909 27 H 0.046 0.954 28 H 0.187 0.813 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.628 -9.362 -3.509 15.335 hybrid contribution -0.410 -0.210 1.439 1.510 sum -12.038 -9.572 -2.070 15.518 Atomic orbital electron populations 1.21763 0.95339 1.01295 1.02363 1.21912 0.95410 0.90259 1.00179 1.60608 1.08671 1.12439 1.50208 1.19976 0.86218 0.91997 0.99893 1.19407 1.17953 0.97625 0.92696 1.23460 1.00234 0.91629 0.98994 1.77338 1.23433 1.20155 0.90963 1.48862 1.45767 1.10374 1.05410 1.19967 0.98636 0.81776 0.88658 1.21173 0.95545 1.10685 1.30591 0.90167 1.24814 0.95136 0.97495 0.95062 1.69872 1.15873 1.33450 1.33128 0.86898 0.81240 0.82420 0.79577 1.19636 1.20441 1.18778 1.20743 0.99206 0.87310 0.96308 1.20421 1.01567 1.02211 0.90979 0.92538 0.92973 0.91891 0.91250 0.95738 0.84347 0.90944 0.95373 0.81266 0.93982 0.93202 0.92094 0.91152 0.90867 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.17 37.15 0.38 -0.94 16 2 C 0.05 0.53 6.40 -3.83 -0.02 0.50 16 3 N -0.69 -8.70 6.49 -115.06 -0.75 -9.44 16 4 C 0.15 2.06 5.84 -4.97 -0.03 2.03 16 5 C -0.26 -4.68 5.61 -105.05 -0.59 -5.27 16 6 C 0.04 0.80 11.96 -17.37 -0.21 0.59 16 7 N -0.30 -6.78 12.58 30.62 0.39 -6.40 16 8 N -0.32 -7.43 3.59 -58.32 -0.21 -7.64 16 9 C 0.23 5.53 4.89 -5.20 -0.03 5.50 16 10 C -0.54 -15.19 9.94 -34.44 -0.34 -15.54 16 11 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 12 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 13 N -0.89 -26.34 13.96 55.43 0.77 -25.57 16 14 Si 0.87 20.17 27.47 -169.99 -4.67 15.50 16 15 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 18 C 0.10 1.87 6.93 -82.26 -0.57 1.30 16 19 C -0.09 -1.46 9.68 36.01 0.35 -1.12 16 20 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.02 0.24 8.14 -51.92 -0.42 -0.18 16 25 H 0.34 4.24 8.72 -39.30 -0.34 3.90 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.03 0.38 7.49 -51.93 -0.39 -0.01 16 28 H 0.17 2.62 8.06 -52.49 -0.42 2.20 16 29 H 0.04 0.93 7.09 -51.93 -0.37 0.56 16 30 H 0.05 1.23 7.19 -51.93 -0.37 0.85 16 31 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.98 7.38 -51.93 -0.38 0.60 16 34 H 0.08 1.46 7.72 -51.93 -0.40 1.06 16 LS Contribution 288.76 15.07 4.35 4.35 Total: -1.00 -31.01 288.76 -6.51 -37.51 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.23 Total: 2.50 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -1.16 Total: -10.83 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: 0.20 Total: -49.04 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.67 Total: 15.50 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.01 -6.51 -37.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042355734.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.048 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds