Wall clock time and date at job start Mon Mar 30 2020 02:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46745 * 2 1 4 4 C 1.52998 * 109.46772 * 239.99645 * 2 1 3 5 5 N 1.46507 * 109.46635 * 175.00120 * 4 2 1 6 6 C 1.34948 * 126.03713 * 125.00268 * 5 4 2 7 7 C 1.35311 * 107.74662 * 180.20300 * 6 5 4 8 8 C 1.39879 * 107.91989 * 359.64181 * 7 6 5 9 9 N 1.30839 * 108.20120 * 0.36262 * 8 7 6 10 10 N 1.46899 * 109.46817 * 119.99791 * 2 1 3 11 11 C 1.46901 * 110.99832 * 240.47495 * 10 2 1 12 12 H 1.09007 * 109.47135 * 326.77043 * 11 10 2 13 13 C 1.52999 * 109.47394 * 86.77747 * 11 10 2 14 14 C 1.50704 * 109.47006 * 206.77999 * 11 10 2 15 15 H 1.08002 * 119.99909 * 359.97438 * 14 11 10 16 16 C 1.37880 * 120.00081 * 179.97438 * 14 11 10 17 17 N 1.31513 * 119.99852 * 359.97438 * 16 14 11 18 18 Si 1.86791 * 119.99922 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47227 * 60.00212 * 18 16 14 20 20 H 1.48507 * 109.47020 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47573 * 299.99957 * 18 16 14 22 22 H 1.08996 * 109.47323 * 175.99528 * 1 2 3 23 23 H 1.08998 * 109.46827 * 295.99715 * 1 2 3 24 24 H 1.09002 * 109.46833 * 55.99482 * 1 2 3 25 25 H 1.08996 * 109.47150 * 55.00633 * 4 2 1 26 26 H 1.08996 * 109.47433 * 295.00056 * 4 2 1 27 27 H 1.08000 * 126.12320 * 359.94021 * 6 5 4 28 28 H 1.07999 * 126.04307 * 179.77032 * 7 6 5 29 29 H 1.07996 * 125.89773 * 180.14309 * 8 7 6 30 30 H 1.00898 * 111.00532 * 4.42676 * 10 2 1 31 31 H 1.09001 * 109.46757 * 301.56393 * 13 11 10 32 32 H 1.08994 * 109.46924 * 61.56913 * 13 11 10 33 33 H 1.09004 * 109.47023 * 181.56812 * 13 11 10 34 34 H 0.96997 * 119.99846 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.6180 -1.3109 6 6 4.3655 -1.6487 -1.4093 7 6 5.6173 -1.1354 -1.4335 8 6 5.5129 0.2573 -1.3553 9 7 4.2444 0.5684 -1.2786 10 7 2.0197 -0.6925 1.1995 11 6 2.8323 0.2055 2.0309 12 1 3.3710 0.9047 1.3912 13 6 1.9213 0.9831 2.9828 14 6 3.8189 -0.6059 2.8305 15 1 3.8398 -1.6812 2.7313 16 6 4.6949 0.0244 3.6887 17 7 4.6698 1.3338 3.8091 18 14 5.9172 -0.9814 4.6803 19 1 6.8011 -1.7370 3.7568 20 1 6.7397 -0.0736 5.5198 21 1 5.1831 -1.9332 5.5524 22 1 -0.3634 -1.0251 -0.0718 23 1 -0.3633 0.4505 0.9237 24 1 -0.3633 0.5748 -0.8520 25 1 1.6054 -0.2618 -2.1369 26 1 1.7516 -1.7715 -1.2055 27 1 4.1057 -2.6960 -1.4557 28 1 6.5347 -1.7009 -1.5033 29 1 6.3373 0.9550 -1.3543 30 1 1.2548 -1.0824 1.7295 31 1 1.1899 1.5483 2.4050 32 1 1.4037 0.2855 3.6411 33 1 2.5213 1.6696 3.5803 34 1 5.2857 1.7772 4.4131 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042540160.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:27 Heat of formation + Delta-G solvation = 77.314157 kcal Electronic energy + Delta-G solvation = -15802.440300 eV Core-core repulsion = 13351.139395 eV Total energy + Delta-G solvation = -2451.300905 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.38403 -36.93733 -33.71806 -31.81339 -30.27720 -29.28377 -26.89260 -25.81803 -25.00032 -21.22302 -20.46326 -20.19954 -19.53088 -16.80547 -16.03928 -15.24136 -14.63935 -14.15077 -13.86030 -13.53193 -13.03144 -12.95785 -12.35321 -12.27168 -12.11889 -11.78272 -11.39367 -11.24428 -10.94071 -10.82803 -10.65146 -10.44639 -10.08422 -9.91681 -9.75677 -8.91594 -8.67170 -8.26924 -7.89275 -7.23621 -5.89602 -3.91668 2.63117 3.24040 3.38574 3.42242 3.45760 3.56700 4.49803 4.87264 5.20820 5.40054 5.42196 5.45360 5.51720 5.62829 5.76862 5.80076 6.11859 6.19586 6.30009 6.40343 6.48750 6.65787 6.74656 6.89076 7.16642 7.33161 7.45238 7.71474 7.79855 7.95023 8.35653 8.42781 8.60424 8.67822 9.13333 9.72406 11.17686 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.021811 B = 0.011437 C = 0.008574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.472284 B = 2447.500340 C = 3264.872026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.066 3.934 3 H 0.073 0.927 4 C 0.149 3.851 5 N -0.346 5.346 6 C 0.065 3.935 7 C -0.283 4.283 8 C 0.041 3.959 9 N -0.289 5.289 10 N -0.678 5.678 11 C 0.216 3.784 12 H 0.041 0.959 13 C -0.168 4.168 14 C -0.489 4.489 15 H 0.057 0.943 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.280 1.280 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.162 0.838 28 H 0.136 0.864 29 H 0.172 0.828 30 H 0.325 0.675 31 H 0.003 0.997 32 H 0.026 0.974 33 H 0.087 0.913 34 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.546 -4.168 -9.585 11.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.046 4.046 3 H 0.091 0.909 4 C 0.026 3.974 5 N -0.127 5.127 6 C -0.083 4.083 7 C -0.312 4.312 8 C -0.145 4.145 9 N -0.111 5.111 10 N -0.308 5.308 11 C 0.108 3.892 12 H 0.059 0.941 13 C -0.227 4.227 14 C -0.528 4.528 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.537 5.537 18 Si 0.722 3.278 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.206 1.206 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.108 0.892 27 H 0.180 0.820 28 H 0.154 0.846 29 H 0.189 0.811 30 H 0.143 0.857 31 H 0.022 0.978 32 H 0.045 0.955 33 H 0.105 0.895 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.904 -3.360 -9.706 11.382 hybrid contribution 0.647 -0.647 1.139 1.461 sum -4.257 -4.007 -8.567 10.372 Atomic orbital electron populations 1.22253 0.96093 1.01790 1.02143 1.21834 0.92497 0.98063 0.92183 0.90856 1.21814 0.75102 1.02028 0.98436 1.48353 1.06121 1.03699 1.54489 1.22274 0.90314 0.94186 1.01480 1.21284 0.97114 0.94536 1.18295 1.23621 0.94539 0.95723 1.00599 1.77226 1.04256 1.06192 1.23403 1.60765 1.24648 1.36909 1.08455 1.19270 0.89976 0.89986 0.89922 0.94074 1.22469 0.98494 1.00915 1.00868 1.21048 1.16135 0.93563 1.22040 0.92484 1.24906 0.97439 0.94871 0.97162 1.69878 1.37929 1.07666 1.38229 0.86627 0.81320 0.79851 0.79955 1.20307 1.21530 1.20565 0.92365 0.92094 0.92629 0.91118 0.89248 0.82048 0.84608 0.81106 0.85750 0.97833 0.95508 0.89460 0.93181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.01 37.16 0.33 -1.87 16 2 C 0.07 1.15 2.78 -67.71 -0.19 0.96 16 3 H 0.07 1.52 7.10 -51.93 -0.37 1.15 16 4 C 0.15 2.29 6.14 -4.04 -0.02 2.26 16 5 N -0.35 -6.36 3.60 -61.37 -0.22 -6.59 16 6 C 0.06 1.11 11.45 -17.22 -0.20 0.91 16 7 C -0.28 -4.95 10.80 -40.01 -0.43 -5.38 16 8 C 0.04 0.78 12.03 -17.36 -0.21 0.57 16 9 N -0.29 -5.99 12.34 30.63 0.38 -5.61 16 10 N -0.68 -14.09 6.09 -100.95 -0.62 -14.70 16 11 C 0.22 5.52 2.45 -68.86 -0.17 5.35 16 12 H 0.04 1.21 7.44 -51.93 -0.39 0.82 16 13 C -0.17 -4.14 8.92 37.16 0.33 -3.81 16 14 C -0.49 -13.87 8.84 -34.44 -0.30 -14.17 16 15 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 16 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 17 N -0.90 -26.54 11.34 55.43 0.63 -25.91 16 18 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.09 1.19 8.07 -51.93 -0.42 0.77 16 27 H 0.16 2.20 8.06 -52.49 -0.42 1.77 16 28 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 29 H 0.17 2.77 8.06 -52.49 -0.42 2.34 16 30 H 0.33 6.38 7.82 -39.29 -0.31 6.07 16 31 H 0.00 0.06 8.11 -51.93 -0.42 -0.36 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.09 2.40 6.12 -51.93 -0.32 2.09 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 287.60 15.07 4.33 4.33 Total: -1.00 -31.82 287.60 -6.62 -38.44 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.15 Total: 6.49 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -0.95 Total: -13.65 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 0.17 Total: -52.81 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.82 -6.62 -38.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042540160.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.755 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds