Wall clock time and date at job start Mon Mar 30 2020 02:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46745 * 2 1 4 4 C 1.52998 * 109.46772 * 239.99645 * 2 1 3 5 5 N 1.46507 * 109.46635 * 175.00120 * 4 2 1 6 6 C 1.34948 * 126.03713 * 125.00268 * 5 4 2 7 7 C 1.35311 * 107.74662 * 180.20300 * 6 5 4 8 8 C 1.39879 * 107.91989 * 359.64181 * 7 6 5 9 9 N 1.30839 * 108.20120 * 0.36262 * 8 7 6 10 10 N 1.46899 * 109.46817 * 119.99791 * 2 1 3 11 11 C 1.46901 * 110.99832 * 240.47495 * 10 2 1 12 12 H 1.09007 * 109.47135 * 326.77043 * 11 10 2 13 13 C 1.52999 * 109.47394 * 86.77747 * 11 10 2 14 14 C 1.50704 * 109.47006 * 206.77999 * 11 10 2 15 15 H 1.08002 * 119.99909 * 359.97438 * 14 11 10 16 16 C 1.37880 * 120.00081 * 179.97438 * 14 11 10 17 17 N 1.31513 * 119.99852 * 359.97438 * 16 14 11 18 18 Si 1.86791 * 119.99922 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47227 * 60.00212 * 18 16 14 20 20 H 1.48507 * 109.47020 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47573 * 299.99957 * 18 16 14 22 22 H 1.08996 * 109.47323 * 175.99528 * 1 2 3 23 23 H 1.08998 * 109.46827 * 295.99715 * 1 2 3 24 24 H 1.09002 * 109.46833 * 55.99482 * 1 2 3 25 25 H 1.08996 * 109.47150 * 55.00633 * 4 2 1 26 26 H 1.08996 * 109.47433 * 295.00056 * 4 2 1 27 27 H 1.08000 * 126.12320 * 359.94021 * 6 5 4 28 28 H 1.07999 * 126.04307 * 179.77032 * 7 6 5 29 29 H 1.07996 * 125.89773 * 180.14309 * 8 7 6 30 30 H 1.00898 * 111.00532 * 4.42676 * 10 2 1 31 31 H 1.09001 * 109.46757 * 301.56393 * 13 11 10 32 32 H 1.08994 * 109.46924 * 61.56913 * 13 11 10 33 33 H 1.09004 * 109.47023 * 181.56812 * 13 11 10 34 34 H 0.96997 * 119.99846 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.6180 -1.3109 6 6 4.3655 -1.6487 -1.4093 7 6 5.6173 -1.1354 -1.4335 8 6 5.5129 0.2573 -1.3553 9 7 4.2444 0.5684 -1.2786 10 7 2.0197 -0.6925 1.1995 11 6 2.8323 0.2055 2.0309 12 1 3.3710 0.9047 1.3912 13 6 1.9213 0.9831 2.9828 14 6 3.8189 -0.6059 2.8305 15 1 3.8398 -1.6812 2.7313 16 6 4.6949 0.0244 3.6887 17 7 4.6698 1.3338 3.8091 18 14 5.9172 -0.9814 4.6803 19 1 6.8011 -1.7370 3.7568 20 1 6.7397 -0.0736 5.5198 21 1 5.1831 -1.9332 5.5524 22 1 -0.3634 -1.0251 -0.0718 23 1 -0.3633 0.4505 0.9237 24 1 -0.3633 0.5748 -0.8520 25 1 1.6054 -0.2618 -2.1369 26 1 1.7516 -1.7715 -1.2055 27 1 4.1057 -2.6960 -1.4557 28 1 6.5347 -1.7009 -1.5033 29 1 6.3373 0.9550 -1.3543 30 1 1.2548 -1.0824 1.7295 31 1 1.1899 1.5483 2.4050 32 1 1.4037 0.2855 3.6411 33 1 2.5213 1.6696 3.5803 34 1 5.2857 1.7772 4.4131 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042540160.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:27 Heat of formation + Delta-G solvation = 55.530678 kcal Electronic energy + Delta-G solvation = -15803.384903 eV Core-core repulsion = 13351.139395 eV Total energy + Delta-G solvation = -2452.245508 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.74598 -38.53525 -35.54485 -33.54311 -31.88841 -30.65629 -28.59985 -27.25085 -26.98133 -22.65112 -22.26765 -21.68663 -20.95611 -18.43069 -17.85779 -16.89773 -16.39351 -15.65504 -15.44907 -14.99479 -14.57732 -14.41536 -13.97991 -13.87698 -13.45162 -13.28369 -12.96579 -12.87135 -12.81536 -12.54001 -12.32677 -12.13778 -12.06963 -11.73029 -11.31019 -10.94756 -10.45969 -10.10296 -9.29810 -8.90037 -8.06982 -6.16920 1.27207 1.39952 1.42566 1.49515 1.97157 2.17587 2.43930 3.21813 3.49623 3.87162 4.18263 4.22916 4.29343 4.36124 4.58754 4.61327 4.75004 4.82481 4.87205 4.98049 5.03364 5.10808 5.19618 5.25101 5.32452 5.47938 5.70345 5.83148 5.97159 6.30516 6.45437 6.67908 6.89022 6.99454 7.03183 7.52252 8.98548 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.021811 B = 0.011437 C = 0.008574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.472284 B = 2447.500340 C = 3264.872026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.067 3.933 3 H 0.033 0.967 4 C 0.144 3.856 5 N -0.353 5.353 6 C 0.062 3.938 7 C -0.297 4.297 8 C 0.021 3.979 9 N -0.335 5.335 10 N -0.677 5.677 11 C 0.229 3.771 12 H -0.002 1.002 13 C -0.155 4.155 14 C -0.504 4.504 15 H 0.050 0.950 16 C 0.007 3.993 17 N -0.925 5.925 18 Si 0.955 3.045 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.270 1.270 22 H 0.083 0.917 23 H 0.050 0.950 24 H 0.077 0.923 25 H 0.096 0.904 26 H 0.119 0.881 27 H 0.199 0.801 28 H 0.158 0.842 29 H 0.184 0.816 30 H 0.333 0.667 31 H 0.021 0.979 32 H 0.033 0.967 33 H 0.055 0.945 34 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.427 -6.107 -10.083 12.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.044 4.044 3 H 0.051 0.949 4 C 0.022 3.978 5 N -0.134 5.134 6 C -0.086 4.086 7 C -0.326 4.326 8 C -0.164 4.164 9 N -0.157 5.157 10 N -0.307 5.307 11 C 0.120 3.880 12 H 0.016 0.984 13 C -0.215 4.215 14 C -0.543 4.543 15 H 0.068 0.932 16 C -0.190 4.190 17 N -0.565 5.565 18 Si 0.781 3.219 19 H -0.200 1.200 20 H -0.213 1.213 21 H -0.195 1.195 22 H 0.102 0.898 23 H 0.069 0.931 24 H 0.096 0.904 25 H 0.114 0.886 26 H 0.137 0.863 27 H 0.216 0.784 28 H 0.175 0.825 29 H 0.201 0.799 30 H 0.151 0.849 31 H 0.040 0.960 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.807 -5.306 -10.218 12.895 hybrid contribution 0.888 -0.034 1.243 1.528 sum -4.919 -5.340 -8.975 11.544 Atomic orbital electron populations 1.22153 0.92597 1.03799 1.02657 1.21854 0.95266 0.95809 0.91509 0.94915 1.22078 0.73793 1.03774 0.98109 1.48632 1.07206 1.03343 1.54211 1.22937 0.90046 0.95534 1.00082 1.21667 0.98518 0.94054 1.18402 1.24053 0.94647 0.97157 1.00557 1.77151 1.05290 1.08189 1.25104 1.60614 1.25111 1.36292 1.08686 1.18867 0.90155 0.89506 0.89444 0.98440 1.22277 0.98257 1.00421 1.00534 1.21353 1.17061 0.93402 1.22435 0.93176 1.25685 0.99216 0.95829 0.98285 1.70029 1.38602 1.09109 1.38806 0.85653 0.79115 0.78514 0.78574 1.20027 1.21252 1.19486 0.89789 0.93114 0.90396 0.88640 0.86313 0.78440 0.82476 0.79884 0.84871 0.95992 0.94808 0.92632 0.93339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.01 71.99 0.65 -3.02 16 2 C 0.07 2.24 2.78 44.92 0.12 2.37 16 3 H 0.03 1.37 7.10 -2.39 -0.02 1.36 16 4 C 0.14 4.08 6.14 86.38 0.53 4.61 16 5 N -0.35 -12.60 3.60 -348.06 -1.25 -13.86 16 6 C 0.06 1.99 11.45 83.54 0.96 2.95 16 7 C -0.30 -10.12 10.80 21.99 0.24 -9.89 16 8 C 0.02 0.79 12.03 85.24 1.03 1.82 16 9 N -0.33 -14.11 12.34 -57.02 -0.70 -14.81 16 10 N -0.68 -27.45 6.09 -473.28 -2.88 -30.34 16 11 C 0.23 11.85 2.45 44.17 0.11 11.96 16 12 H 0.00 -0.14 7.44 -2.38 -0.02 -0.16 16 13 C -0.16 -7.73 8.92 71.98 0.64 -7.08 16 14 C -0.50 -28.69 8.84 25.60 0.23 -28.47 16 15 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 16 C 0.01 0.43 5.30 84.66 0.45 0.88 16 17 N -0.92 -55.81 11.34 21.45 0.24 -55.56 16 18 Si 0.96 45.57 29.54 68.60 2.03 47.60 16 19 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 22 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.12 2.67 8.07 -2.39 -0.02 2.65 16 27 H 0.20 4.69 8.06 -2.91 -0.02 4.67 16 28 H 0.16 4.47 8.06 -2.91 -0.02 4.44 16 29 H 0.18 6.13 8.06 -2.91 -0.02 6.10 16 30 H 0.33 12.47 7.82 -89.70 -0.70 11.77 16 31 H 0.02 0.96 8.11 -2.39 -0.02 0.94 16 32 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.05 3.12 6.12 -2.39 -0.01 3.11 16 34 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -70.17 287.60 2.75 -67.42 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.37 Total: 23.44 kcal Atomic # 6 Polarization: -28.84 SS G_CDS: 4.95 Total: -23.89 kcal Atomic # 7 Polarization: -109.97 SS G_CDS: -4.60 Total: -114.57 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -70.17 2.75 -67.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042540160.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.952 kcal (2) G-P(sol) polarization free energy of solvation -70.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds