Wall clock time and date at job start Mon Mar 30 2020 02:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 5 5 H 1.08003 * 119.99769 * 120.00271 * 4 2 1 6 6 C 1.37868 * 119.99983 * 300.00181 * 4 2 1 7 7 N 1.31519 * 120.00448 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00188 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46437 * 0.02562 * 8 6 4 10 10 H 1.48492 * 109.47263 * 119.99625 * 8 6 4 11 11 H 1.48498 * 109.47269 * 240.00311 * 8 6 4 12 12 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 13 13 C 1.46901 * 110.99870 * 85.00132 * 12 2 1 14 14 C 1.53004 * 109.46916 * 180.02562 * 13 12 2 15 15 C 1.50703 * 109.46807 * 179.97438 * 14 13 12 16 16 N 1.30496 * 125.64717 * 269.69115 * 15 14 13 17 17 C 1.34135 * 109.25224 * 179.89793 * 16 15 14 18 18 C 1.34659 * 108.01857 * 0.36544 * 17 16 15 19 19 N 1.35042 * 125.64873 * 89.99864 * 15 14 13 20 20 C 1.46499 * 126.39883 * 359.97438 * 19 15 14 21 21 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 22 22 H 1.09003 * 109.46813 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 24 24 H 0.96997 * 120.00331 * 179.97438 * 7 6 4 25 25 H 1.00901 * 110.99869 * 321.04843 * 12 2 1 26 26 H 1.09004 * 109.47031 * 299.99620 * 13 12 2 27 27 H 1.08995 * 109.47111 * 59.99900 * 13 12 2 28 28 H 1.08995 * 109.46615 * 299.99641 * 14 13 12 29 29 H 1.08996 * 109.46939 * 60.00272 * 14 13 12 30 30 H 1.08004 * 125.98643 * 180.11906 * 17 16 15 31 31 H 1.08004 * 126.58884 * 179.74588 * 18 17 16 32 32 H 1.08992 * 109.47387 * 89.99853 * 20 19 15 33 33 H 1.09000 * 109.47007 * 210.00078 * 20 19 15 34 34 H 1.09001 * 109.46755 * 329.99480 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.1485 -2.2856 3.6037 10 1 3.1472 -0.1858 4.8160 11 1 1.1678 -1.5867 4.8165 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2226 -2.3469 14 6 2.5951 -0.5332 -3.5745 15 6 2.6589 0.4055 -4.7518 16 7 1.6970 0.6189 -5.6074 17 6 2.1056 1.5150 -6.5180 18 6 3.3714 1.8643 -6.2197 19 7 3.7230 1.1608 -5.0994 20 6 5.0128 1.2166 -4.4069 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.7089 1.1613 3.4844 25 1 1.4495 -1.4979 -1.4101 26 1 1.0871 0.6163 -2.5526 27 1 2.7589 1.0462 -2.1182 28 1 3.5904 -0.9271 -3.3691 29 1 1.9183 -1.3564 -3.8030 30 1 1.5230 1.8878 -7.3475 31 1 3.9906 2.5645 -6.7608 32 1 5.6827 0.4656 -4.8255 33 1 5.4513 2.2063 -4.5347 34 1 4.8640 1.0195 -3.3453 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045134456.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:54 Heat of formation + Delta-G solvation = 55.076635 kcal Electronic energy + Delta-G solvation = -14950.511980 eV Core-core repulsion = 12498.246783 eV Total energy + Delta-G solvation = -2452.265196 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.98332 -36.33205 -33.96138 -33.30554 -31.42120 -28.75427 -27.13146 -26.25180 -25.10534 -22.23194 -21.30159 -20.24161 -19.50395 -16.96498 -16.30323 -15.63931 -15.00727 -14.77182 -14.17705 -13.95250 -13.37266 -13.35003 -12.94282 -12.76667 -12.39497 -12.17724 -11.61784 -11.51505 -11.01772 -10.90790 -10.65897 -10.35569 -10.11128 -9.89161 -9.85092 -9.53995 -8.99451 -8.35825 -8.26326 -7.25308 -5.97383 -4.00988 2.10165 2.84613 3.24656 3.32066 3.39771 3.44882 4.42724 4.57486 4.70602 4.84639 5.04870 5.26782 5.34095 5.36711 5.47127 5.50581 5.70243 5.85492 5.93708 6.26571 6.42414 6.45343 6.73973 6.83647 6.88838 7.12616 7.24259 7.37919 7.76632 7.89079 8.22464 8.28064 8.53383 8.61737 9.06586 9.64467 11.09716 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.049977 B = 0.005253 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.121960 B = 5329.303574 C = 5567.657864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.211 3.789 3 H 0.032 0.968 4 C -0.494 4.494 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.286 1.286 12 N -0.684 5.684 13 C 0.068 3.932 14 C -0.035 4.035 15 C 0.222 3.778 16 N -0.495 5.495 17 C -0.031 4.031 18 C -0.069 4.069 19 N -0.459 5.459 20 C 0.068 3.932 21 H 0.006 0.994 22 H 0.029 0.971 23 H 0.088 0.912 24 H 0.259 0.741 25 H 0.327 0.673 26 H 0.027 0.973 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.167 0.833 31 H 0.171 0.829 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.556 1.381 -14.087 15.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.104 3.896 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.212 1.212 12 N -0.314 5.314 13 C -0.063 4.063 14 C -0.074 4.074 15 C -0.041 4.041 16 N -0.213 5.213 17 C -0.179 4.179 18 C -0.202 4.202 19 N -0.141 5.141 20 C -0.074 4.074 21 H 0.025 0.975 22 H 0.048 0.952 23 H 0.107 0.893 24 H 0.069 0.931 25 H 0.143 0.857 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.184 0.816 31 H 0.188 0.812 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.538 1.223 -13.689 15.219 hybrid contribution 0.141 0.329 0.507 0.621 sum 6.679 1.552 -13.182 14.859 Atomic orbital electron populations 1.22425 1.00596 0.99305 1.00566 1.19174 0.89740 0.94335 0.86395 0.95025 1.21198 1.30133 1.12398 0.89566 0.91843 1.24964 0.95365 0.95215 0.99077 1.69902 1.37390 1.23245 1.23223 0.86453 0.78509 0.79628 0.82864 1.19721 1.21197 1.21197 1.60845 1.58163 1.09113 1.03309 1.21783 0.99009 0.95674 0.89814 1.20083 1.03516 0.95285 0.88542 1.23429 0.83389 0.98055 0.99245 1.70276 1.28270 1.17696 1.05062 1.22272 0.94030 1.00278 1.01339 1.22628 0.99450 1.04603 0.93505 1.45331 1.13238 1.33248 1.22308 1.22099 0.82660 1.03643 0.99021 0.97486 0.95234 0.89310 0.93132 0.85656 0.95495 0.92174 0.89774 0.89104 0.81608 0.81187 0.90578 0.89763 0.88633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 8.94 37.16 0.33 -3.84 16 2 C 0.21 5.34 2.57 -68.86 -0.18 5.16 16 3 H 0.03 0.88 7.80 -51.93 -0.40 0.48 16 4 C -0.49 -13.64 8.84 -34.44 -0.30 -13.95 16 5 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 6 C 0.05 1.50 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -25.85 11.32 55.43 0.63 -25.22 16 8 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 9 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 N -0.68 -14.37 6.23 -107.94 -0.67 -15.04 16 13 C 0.07 1.24 5.47 -3.82 -0.02 1.22 16 14 C -0.03 -0.52 5.57 -27.88 -0.16 -0.68 16 15 C 0.22 3.43 7.16 -155.42 -1.11 2.31 16 16 N -0.49 -8.35 11.25 -10.82 -0.12 -8.47 16 17 C -0.03 -0.43 11.87 -17.81 -0.21 -0.64 16 18 C -0.07 -0.82 11.58 -16.57 -0.19 -1.01 16 19 N -0.46 -5.87 3.15 -121.28 -0.38 -6.25 16 20 C 0.07 0.62 10.79 59.85 0.65 1.27 16 21 H 0.01 0.14 7.45 -51.93 -0.39 -0.24 16 22 H 0.03 0.69 8.13 -51.93 -0.42 0.27 16 23 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.33 6.52 8.47 -39.29 -0.33 6.19 16 26 H 0.03 0.53 7.44 -51.93 -0.39 0.15 16 27 H 0.06 1.12 8.05 -51.93 -0.42 0.70 16 28 H 0.08 1.14 7.71 -51.93 -0.40 0.74 16 29 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.17 1.81 8.06 -52.48 -0.42 1.38 16 31 H 0.17 1.37 8.06 -52.48 -0.42 0.95 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.10 0.94 7.66 -51.93 -0.40 0.54 16 LS Contribution 286.34 15.07 4.32 4.32 Total: -1.00 -31.55 286.34 -7.67 -39.22 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.12 Total: 3.80 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -1.29 Total: -8.74 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.55 Total: -54.99 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.55 -7.67 -39.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045134456.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.297 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds