Wall clock time and date at job start Mon Mar 30 2020 02:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 5 5 H 1.08003 * 119.99769 * 120.00271 * 4 2 1 6 6 C 1.37868 * 119.99983 * 300.00181 * 4 2 1 7 7 N 1.31519 * 120.00448 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00188 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46437 * 0.02562 * 8 6 4 10 10 H 1.48492 * 109.47263 * 119.99625 * 8 6 4 11 11 H 1.48498 * 109.47269 * 240.00311 * 8 6 4 12 12 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 13 13 C 1.46901 * 110.99870 * 85.00132 * 12 2 1 14 14 C 1.53004 * 109.46916 * 180.02562 * 13 12 2 15 15 C 1.50703 * 109.46807 * 179.97438 * 14 13 12 16 16 N 1.30496 * 125.64717 * 269.69115 * 15 14 13 17 17 C 1.34135 * 109.25224 * 179.89793 * 16 15 14 18 18 C 1.34659 * 108.01857 * 0.36544 * 17 16 15 19 19 N 1.35042 * 125.64873 * 89.99864 * 15 14 13 20 20 C 1.46499 * 126.39883 * 359.97438 * 19 15 14 21 21 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 22 22 H 1.09003 * 109.46813 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 24 24 H 0.96997 * 120.00331 * 179.97438 * 7 6 4 25 25 H 1.00901 * 110.99869 * 321.04843 * 12 2 1 26 26 H 1.09004 * 109.47031 * 299.99620 * 13 12 2 27 27 H 1.08995 * 109.47111 * 59.99900 * 13 12 2 28 28 H 1.08995 * 109.46615 * 299.99641 * 14 13 12 29 29 H 1.08996 * 109.46939 * 60.00272 * 14 13 12 30 30 H 1.08004 * 125.98643 * 180.11906 * 17 16 15 31 31 H 1.08004 * 126.58884 * 179.74588 * 18 17 16 32 32 H 1.08992 * 109.47387 * 89.99853 * 20 19 15 33 33 H 1.09000 * 109.47007 * 210.00078 * 20 19 15 34 34 H 1.09001 * 109.46755 * 329.99480 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.1485 -2.2856 3.6037 10 1 3.1472 -0.1858 4.8160 11 1 1.1678 -1.5867 4.8165 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2226 -2.3469 14 6 2.5951 -0.5332 -3.5745 15 6 2.6589 0.4055 -4.7518 16 7 1.6970 0.6189 -5.6074 17 6 2.1056 1.5150 -6.5180 18 6 3.3714 1.8643 -6.2197 19 7 3.7230 1.1608 -5.0994 20 6 5.0128 1.2166 -4.4069 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.7089 1.1613 3.4844 25 1 1.4495 -1.4979 -1.4101 26 1 1.0871 0.6163 -2.5526 27 1 2.7589 1.0462 -2.1182 28 1 3.5904 -0.9271 -3.3691 29 1 1.9183 -1.3564 -3.8030 30 1 1.5230 1.8878 -7.3475 31 1 3.9906 2.5645 -6.7608 32 1 5.6827 0.4656 -4.8255 33 1 5.4513 2.2063 -4.5347 34 1 4.8640 1.0195 -3.3453 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045134456.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:54 Heat of formation + Delta-G solvation = 34.239246 kcal Electronic energy + Delta-G solvation = -14951.415557 eV Core-core repulsion = 12498.246783 eV Total energy + Delta-G solvation = -2453.168773 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.99516 -38.09420 -35.16578 -34.84021 -33.09574 -30.26867 -28.20471 -27.48856 -27.20424 -23.72305 -22.29694 -22.15435 -20.62629 -18.37693 -17.89879 -16.77247 -16.69186 -16.31146 -15.58073 -15.33663 -14.91810 -14.49840 -14.02261 -13.92434 -13.79919 -13.51307 -13.33046 -13.07630 -12.86004 -12.65439 -12.42915 -12.20055 -11.99429 -11.83078 -11.04519 -10.93682 -10.53990 -10.48837 -9.29102 -9.03477 -8.08718 -6.20465 1.10547 1.44417 1.46053 1.58658 1.95587 2.16838 2.45806 3.19932 3.35660 3.79903 3.97324 4.06608 4.16761 4.34640 4.43399 4.49590 4.63442 4.69071 4.71640 4.75951 4.86753 4.97994 5.05131 5.11366 5.39383 5.39494 5.68922 5.80533 5.88081 6.25173 6.26484 6.60227 6.79418 6.94562 7.18352 7.49823 8.97484 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.049977 B = 0.005253 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.121960 B = 5329.303574 C = 5567.657864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.215 3.785 3 H 0.000 1.000 4 C -0.512 4.512 5 H 0.060 0.940 6 C 0.006 3.994 7 N -0.926 5.926 8 Si 0.964 3.036 9 H -0.265 1.265 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.680 5.680 13 C 0.079 3.921 14 C -0.019 4.019 15 C 0.193 3.807 16 N -0.534 5.534 17 C -0.062 4.062 18 C -0.050 4.050 19 N -0.458 5.458 20 C 0.062 3.938 21 H 0.018 0.982 22 H 0.035 0.965 23 H 0.062 0.938 24 H 0.261 0.739 25 H 0.335 0.665 26 H 0.008 0.992 27 H 0.053 0.947 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.185 0.815 31 H 0.213 0.787 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.073 1.144 -14.759 16.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.107 3.893 3 H 0.018 0.982 4 C -0.551 4.551 5 H 0.078 0.922 6 C -0.192 4.192 7 N -0.566 5.566 8 Si 0.790 3.210 9 H -0.190 1.190 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.310 5.310 13 C -0.052 4.052 14 C -0.059 4.059 15 C -0.070 4.070 16 N -0.254 5.254 17 C -0.209 4.209 18 C -0.183 4.183 19 N -0.140 5.140 20 C -0.079 4.079 21 H 0.037 0.963 22 H 0.054 0.946 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.152 0.848 26 H 0.026 0.974 27 H 0.071 0.929 28 H 0.119 0.881 29 H 0.109 0.891 30 H 0.202 0.798 31 H 0.229 0.771 32 H 0.115 0.885 33 H 0.128 0.872 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.072 0.975 -14.370 16.511 hybrid contribution -0.310 0.472 0.631 0.846 sum 7.762 1.446 -13.739 15.846 Atomic orbital electron populations 1.22255 1.00263 0.99400 0.99799 1.18947 0.89898 0.92741 0.87753 0.98234 1.21477 1.30347 1.12483 0.90757 0.92186 1.25770 0.95451 0.95864 1.02088 1.70034 1.38212 1.24445 1.23952 0.85412 0.78012 0.78611 0.78993 1.18955 1.20807 1.20782 1.60710 1.57763 1.09448 1.03104 1.21691 0.97947 0.95395 0.90153 1.19852 1.04148 0.94812 0.87041 1.23282 0.84511 0.99517 0.99667 1.70183 1.29739 1.19123 1.06317 1.22765 0.95536 1.00672 1.01973 1.23285 0.99056 1.03507 0.92479 1.45577 1.13714 1.32268 1.22438 1.22366 0.81390 1.05940 0.98231 0.96285 0.94577 0.91937 0.93037 0.84788 0.97424 0.92885 0.88132 0.89114 0.79752 0.77082 0.88506 0.87232 0.89718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.87 8.94 71.98 0.64 -7.22 16 2 C 0.22 11.05 2.57 44.17 0.11 11.16 16 3 H 0.00 -0.02 7.80 -2.39 -0.02 -0.04 16 4 C -0.51 -28.36 8.84 25.60 0.23 -28.13 16 5 H 0.06 3.30 7.81 -2.91 -0.02 3.28 16 6 C 0.01 0.34 5.30 84.65 0.45 0.79 16 7 N -0.93 -53.88 11.32 21.44 0.24 -53.64 16 8 Si 0.96 43.72 29.54 68.60 2.03 45.75 16 9 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 N -0.68 -28.57 6.23 -495.42 -3.09 -31.65 16 13 C 0.08 2.90 5.47 86.30 0.47 3.37 16 14 C -0.02 -0.56 5.57 29.85 0.17 -0.40 16 15 C 0.19 5.82 7.16 138.13 0.99 6.81 16 16 N -0.53 -17.85 11.25 -188.13 -2.12 -19.97 16 17 C -0.06 -1.63 11.87 83.52 0.99 -0.64 16 18 C -0.05 -1.04 11.58 83.08 0.96 -0.08 16 19 N -0.46 -10.76 3.15 -537.63 -1.69 -12.46 16 20 C 0.06 0.96 10.79 127.77 1.38 2.34 16 21 H 0.02 0.85 7.45 -2.39 -0.02 0.83 16 22 H 0.04 1.70 8.13 -2.39 -0.02 1.68 16 23 H 0.06 3.46 6.07 -2.39 -0.01 3.45 16 24 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 25 H 0.33 13.21 8.47 -89.69 -0.76 12.45 16 26 H 0.01 0.31 7.44 -2.39 -0.02 0.29 16 27 H 0.05 2.00 8.05 -2.39 -0.02 1.98 16 28 H 0.10 2.59 7.71 -2.39 -0.02 2.57 16 29 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.19 3.78 8.06 -2.91 -0.02 3.76 16 31 H 0.21 2.47 8.06 -2.91 -0.02 2.45 16 32 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.52 7.66 -2.39 -0.02 1.50 16 Total: -1.00 -68.02 286.34 2.08 -65.94 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.32 Total: 18.04 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: 6.39 Total: -12.01 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -6.66 Total: -117.72 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -68.02 2.08 -65.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045134456.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.181 kcal (2) G-P(sol) polarization free energy of solvation -68.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds