Wall clock time and date at job start Mon Mar 30 2020 02:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.47021 * 2 1 4 4 C 1.50702 * 109.46796 * 240.00197 * 2 1 3 5 5 H 1.07998 * 120.00068 * 239.99553 * 4 2 1 6 6 C 1.37871 * 120.00064 * 59.72745 * 4 2 1 7 7 N 1.31515 * 119.99972 * 0.27198 * 6 4 2 8 8 Si 1.86800 * 120.00139 * 180.27158 * 6 4 2 9 9 H 1.48500 * 109.46996 * 59.99969 * 8 6 4 10 10 H 1.48508 * 109.47283 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47282 * 299.99944 * 8 6 4 12 12 N 1.46897 * 109.47100 * 120.00249 * 2 1 3 13 13 C 1.46899 * 111.00094 * 206.09703 * 12 2 1 14 14 H 1.09007 * 109.46832 * 325.98504 * 13 12 2 15 15 C 1.53002 * 109.46963 * 85.98191 * 13 12 2 16 16 C 1.52997 * 109.47325 * 205.98252 * 13 12 2 17 17 N 1.46504 * 109.46829 * 65.00260 * 16 13 12 18 18 C 1.36882 * 126.39687 * 269.71169 * 17 16 13 19 19 C 1.34667 * 106.82098 * 179.84347 * 18 17 16 20 20 N 1.34132 * 108.01524 * 0.42208 * 19 18 17 21 21 C 1.30496 * 109.25768 * 359.73578 * 20 19 18 22 22 H 1.08998 * 109.46962 * 54.01527 * 1 2 3 23 23 H 1.08999 * 109.47327 * 174.01851 * 1 2 3 24 24 H 1.09001 * 109.46551 * 294.01988 * 1 2 3 25 25 H 0.97003 * 120.00240 * 180.02562 * 7 6 4 26 26 H 1.00900 * 111.00000 * 330.05189 * 12 2 1 27 27 H 1.09005 * 109.46945 * 55.18212 * 15 13 12 28 28 H 1.08996 * 109.47204 * 175.17989 * 15 13 12 29 29 H 1.09000 * 109.47307 * 295.18272 * 15 13 12 30 30 H 1.08995 * 109.47453 * 184.99688 * 16 13 12 31 31 H 1.08999 * 109.47122 * 305.00272 * 16 13 12 32 32 H 1.08007 * 126.58697 * 359.97438 * 18 17 16 33 33 H 1.07993 * 125.99113 * 180.11574 * 19 18 17 34 34 H 1.07999 * 125.64778 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6946 -0.2426 -2.4827 7 7 0.9385 0.8267 -2.6033 8 14 2.3109 -1.1276 -4.0080 9 1 1.8153 -2.5274 -4.0022 10 1 1.8110 -0.4309 -5.2205 11 1 3.7959 -1.1283 -4.0138 12 7 2.0197 -0.6925 1.1994 13 6 3.3564 -0.2130 1.5754 14 1 3.9188 0.0375 0.6758 15 6 3.2228 1.0308 2.4563 16 6 4.0926 -1.3089 2.3485 17 7 4.3260 -2.4556 1.4671 18 6 3.4921 -3.5265 1.2893 19 6 4.0872 -4.3397 0.3960 20 7 5.2570 -3.7852 0.0450 21 6 5.4068 -2.6565 0.6827 22 1 -0.3633 0.6038 -0.8315 23 1 -0.3634 -1.0220 -0.1071 24 1 -0.3632 0.4183 0.9387 25 1 0.7006 1.1556 -3.4843 26 1 1.3707 -0.5918 1.9654 27 1 2.5887 0.8028 3.3131 28 1 4.2091 1.3364 2.8054 29 1 2.7754 1.8393 1.8781 30 1 5.0482 -0.9235 2.7039 31 1 3.4879 -1.6220 3.1996 32 1 2.5390 -3.6871 1.7712 33 1 3.6939 -5.2767 0.0304 34 1 6.2544 -1.9928 0.5969 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049235358.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:58 Heat of formation + Delta-G solvation = 59.547805 kcal Electronic energy + Delta-G solvation = -15792.244749 eV Core-core repulsion = 13340.173437 eV Total energy + Delta-G solvation = -2452.071312 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.35479 -37.09146 -33.99100 -32.25360 -30.49260 -28.79463 -27.01179 -26.04761 -25.11959 -21.11515 -20.74998 -20.20993 -20.05375 -16.92714 -16.13140 -15.15161 -14.76742 -14.30112 -13.95804 -13.61679 -13.26209 -13.16583 -12.71484 -12.49696 -12.33478 -12.05925 -11.65204 -11.31632 -10.86872 -10.69187 -10.60836 -10.31093 -10.09141 -9.85769 -9.39546 -9.19224 -8.89678 -8.37132 -7.85396 -7.31513 -5.95799 -3.97970 2.73662 3.40401 3.42158 3.44081 3.50324 3.81779 4.48872 4.80978 5.16378 5.24216 5.28570 5.35960 5.46883 5.48196 5.67034 5.74475 6.00480 6.06955 6.29799 6.32886 6.42622 6.69342 6.90476 6.93144 6.99534 7.37234 7.38414 7.69333 7.81736 7.94331 8.19749 8.33100 8.68658 8.69472 9.10920 9.67929 11.10953 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.020645 B = 0.012044 C = 0.008709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.941100 B = 2324.283824 C = 3214.165126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.216 3.784 3 H 0.001 0.999 4 C -0.488 4.488 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.901 5.901 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.290 1.290 11 H -0.278 1.278 12 N -0.675 5.675 13 C 0.071 3.929 14 H 0.089 0.911 15 C -0.176 4.176 16 C 0.118 3.882 17 N -0.435 5.435 18 C -0.010 4.010 19 C -0.052 4.052 20 N -0.501 5.501 21 C 0.168 3.832 22 H 0.085 0.915 23 H 0.035 0.965 24 H 0.003 0.997 25 H 0.259 0.741 26 H 0.315 0.685 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.166 0.834 33 H 0.159 0.841 34 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.275 -1.905 10.996 11.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.109 3.891 3 H 0.019 0.981 4 C -0.527 4.527 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.541 5.541 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.216 1.216 11 H -0.203 1.203 12 N -0.305 5.305 13 C -0.041 4.041 14 H 0.107 0.893 15 C -0.236 4.236 16 C -0.006 4.006 17 N -0.116 5.116 18 C -0.145 4.145 19 C -0.199 4.199 20 N -0.220 5.220 21 C -0.114 4.114 22 H 0.103 0.897 23 H 0.055 0.945 24 H 0.022 0.978 25 H 0.068 0.932 26 H 0.131 0.869 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.183 0.817 33 H 0.176 0.824 34 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 4.965 -2.551 10.013 11.464 hybrid contribution -0.676 0.967 -0.068 1.182 sum 4.289 -1.584 9.945 10.945 Atomic orbital electron populations 1.21936 0.98303 1.00590 0.98958 1.19139 0.91372 0.91943 0.86683 0.98132 1.21117 1.30161 1.12002 0.89375 0.92011 1.24921 0.95368 0.95114 0.99024 1.69884 1.37488 1.23353 1.23351 0.86618 0.79249 0.79854 0.82073 1.20256 1.21616 1.20344 1.60754 1.01234 1.60953 1.07554 1.21852 0.93917 0.90617 0.97739 0.89274 1.22445 1.01515 0.99557 1.00035 1.21951 1.00699 0.85767 0.92181 1.45191 1.16231 1.16844 1.33342 1.22465 0.97805 0.89296 1.04906 1.22061 0.94078 1.02203 1.01571 1.70150 1.19564 1.08199 1.24079 1.24649 0.93658 0.97671 0.95394 0.89654 0.94544 0.97779 0.93155 0.86855 0.92893 0.92765 0.91890 0.89818 0.89869 0.81695 0.82394 0.79052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.92 37.16 0.33 -2.95 16 2 C 0.22 5.18 2.42 -68.86 -0.17 5.01 16 3 H 0.00 0.03 7.23 -51.93 -0.38 -0.35 16 4 C -0.49 -13.43 8.56 -34.44 -0.29 -13.73 16 5 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 7 N -0.90 -25.91 11.38 55.43 0.63 -25.28 16 8 Si 0.89 22.58 29.54 -169.99 -5.02 17.56 16 9 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 12 N -0.68 -12.89 5.75 -100.95 -0.58 -13.47 16 13 C 0.07 1.14 2.63 -67.71 -0.18 0.96 16 14 H 0.09 1.75 7.67 -51.93 -0.40 1.36 16 15 C -0.18 -2.34 9.17 37.16 0.34 -2.00 16 16 C 0.12 1.55 5.78 -4.04 -0.02 1.53 16 17 N -0.44 -7.05 2.69 -118.58 -0.32 -7.37 16 18 C -0.01 -0.17 11.34 -16.56 -0.19 -0.36 16 19 C -0.05 -0.95 11.87 -17.81 -0.21 -1.16 16 20 N -0.50 -9.90 11.25 -14.67 -0.17 -10.06 16 21 C 0.17 2.91 12.56 -90.38 -1.14 1.77 16 22 H 0.08 2.23 6.24 -51.93 -0.32 1.91 16 23 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.00 0.07 8.00 -51.93 -0.42 -0.35 16 25 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 26 H 0.31 5.43 7.91 -39.29 -0.31 5.12 16 27 H 0.05 0.62 8.04 -51.93 -0.42 0.20 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.97 7.57 -51.93 -0.39 0.57 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.17 2.51 8.06 -52.48 -0.42 2.09 16 33 H 0.16 2.56 8.06 -52.49 -0.42 2.14 16 34 H 0.19 2.66 8.06 -52.49 -0.42 2.23 16 LS Contribution 286.00 15.07 4.31 4.31 Total: -1.00 -31.20 286.00 -7.90 -39.11 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.14 Total: 4.65 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -1.62 Total: -9.44 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.43 Total: -56.19 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.20 -7.90 -39.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049235358.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.655 kcal (2) G-P(sol) polarization free energy of solvation -31.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds