Wall clock time and date at job start Mon Mar 30 2020 02:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.47021 * 2 1 4 4 C 1.50702 * 109.46796 * 240.00197 * 2 1 3 5 5 H 1.07998 * 120.00068 * 239.99553 * 4 2 1 6 6 C 1.37871 * 120.00064 * 59.72745 * 4 2 1 7 7 N 1.31515 * 119.99972 * 0.27198 * 6 4 2 8 8 Si 1.86800 * 120.00139 * 180.27158 * 6 4 2 9 9 H 1.48500 * 109.46996 * 59.99969 * 8 6 4 10 10 H 1.48508 * 109.47283 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47282 * 299.99944 * 8 6 4 12 12 N 1.46897 * 109.47100 * 120.00249 * 2 1 3 13 13 C 1.46899 * 111.00094 * 206.09703 * 12 2 1 14 14 H 1.09007 * 109.46832 * 325.98504 * 13 12 2 15 15 C 1.53002 * 109.46963 * 85.98191 * 13 12 2 16 16 C 1.52997 * 109.47325 * 205.98252 * 13 12 2 17 17 N 1.46504 * 109.46829 * 65.00260 * 16 13 12 18 18 C 1.36882 * 126.39687 * 269.71169 * 17 16 13 19 19 C 1.34667 * 106.82098 * 179.84347 * 18 17 16 20 20 N 1.34132 * 108.01524 * 0.42208 * 19 18 17 21 21 C 1.30496 * 109.25768 * 359.73578 * 20 19 18 22 22 H 1.08998 * 109.46962 * 54.01527 * 1 2 3 23 23 H 1.08999 * 109.47327 * 174.01851 * 1 2 3 24 24 H 1.09001 * 109.46551 * 294.01988 * 1 2 3 25 25 H 0.97003 * 120.00240 * 180.02562 * 7 6 4 26 26 H 1.00900 * 111.00000 * 330.05189 * 12 2 1 27 27 H 1.09005 * 109.46945 * 55.18212 * 15 13 12 28 28 H 1.08996 * 109.47204 * 175.17989 * 15 13 12 29 29 H 1.09000 * 109.47307 * 295.18272 * 15 13 12 30 30 H 1.08995 * 109.47453 * 184.99688 * 16 13 12 31 31 H 1.08999 * 109.47122 * 305.00272 * 16 13 12 32 32 H 1.08007 * 126.58697 * 359.97438 * 18 17 16 33 33 H 1.07993 * 125.99113 * 180.11574 * 19 18 17 34 34 H 1.07999 * 125.64778 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6946 -0.2426 -2.4827 7 7 0.9385 0.8267 -2.6033 8 14 2.3109 -1.1276 -4.0080 9 1 1.8153 -2.5274 -4.0022 10 1 1.8110 -0.4309 -5.2205 11 1 3.7959 -1.1283 -4.0138 12 7 2.0197 -0.6925 1.1994 13 6 3.3564 -0.2130 1.5754 14 1 3.9188 0.0375 0.6758 15 6 3.2228 1.0308 2.4563 16 6 4.0926 -1.3089 2.3485 17 7 4.3260 -2.4556 1.4671 18 6 3.4921 -3.5265 1.2893 19 6 4.0872 -4.3397 0.3960 20 7 5.2570 -3.7852 0.0450 21 6 5.4068 -2.6565 0.6827 22 1 -0.3633 0.6038 -0.8315 23 1 -0.3634 -1.0220 -0.1071 24 1 -0.3632 0.4183 0.9387 25 1 0.7006 1.1556 -3.4843 26 1 1.3707 -0.5918 1.9654 27 1 2.5887 0.8028 3.3131 28 1 4.2091 1.3364 2.8054 29 1 2.7754 1.8393 1.8781 30 1 5.0482 -0.9235 2.7039 31 1 3.4879 -1.6220 3.1996 32 1 2.5390 -3.6871 1.7712 33 1 3.6939 -5.2767 0.0304 34 1 6.2544 -1.9928 0.5969 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049235358.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:58 Heat of formation + Delta-G solvation = 40.087945 kcal Electronic energy + Delta-G solvation = -15793.088592 eV Core-core repulsion = 13340.173437 eV Total energy + Delta-G solvation = -2452.915155 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.65469 -38.58104 -35.69486 -33.92923 -32.13559 -30.12466 -28.60255 -27.26945 -27.16067 -22.54325 -22.23648 -21.86348 -21.32566 -18.24184 -18.18049 -16.92268 -16.13934 -15.94326 -15.40864 -15.10106 -14.85798 -14.53867 -14.17861 -13.92960 -13.73236 -13.31909 -13.09224 -12.88776 -12.81611 -12.68315 -12.26114 -12.02247 -11.93747 -11.68921 -11.15476 -10.76332 -10.52885 -10.26019 -9.21599 -8.91002 -8.10687 -6.18239 1.35735 1.36106 1.43063 1.45492 2.25307 2.40309 2.44338 3.17055 3.53990 3.98779 4.04091 4.11042 4.28892 4.39069 4.49841 4.67783 4.76911 4.80873 4.89152 4.99142 4.99840 5.05163 5.18249 5.28205 5.49520 5.62226 5.73471 5.85943 6.05678 6.32147 6.47740 6.58722 6.95579 7.03114 7.36022 7.50695 8.93463 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.020645 B = 0.012044 C = 0.008709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.941100 B = 2324.283824 C = 3214.165126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.224 3.776 3 H -0.027 1.027 4 C -0.492 4.492 5 H 0.041 0.959 6 C 0.014 3.986 7 N -0.920 5.920 8 Si 0.941 3.059 9 H -0.279 1.279 10 H -0.281 1.281 11 H -0.283 1.283 12 N -0.675 5.675 13 C 0.071 3.929 14 H 0.047 0.953 15 C -0.166 4.166 16 C 0.121 3.879 17 N -0.435 5.435 18 C -0.011 4.011 19 C -0.081 4.081 20 N -0.542 5.542 21 C 0.161 3.839 22 H 0.055 0.945 23 H 0.029 0.971 24 H 0.036 0.964 25 H 0.259 0.741 26 H 0.330 0.670 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.035 0.965 30 H 0.120 0.880 31 H 0.109 0.891 32 H 0.183 0.817 33 H 0.167 0.833 34 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.600 -1.776 12.843 13.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.116 3.884 3 H -0.010 1.010 4 C -0.531 4.531 5 H 0.059 0.941 6 C -0.184 4.184 7 N -0.561 5.561 8 Si 0.769 3.231 9 H -0.205 1.205 10 H -0.206 1.206 11 H -0.209 1.209 12 N -0.306 5.306 13 C -0.040 4.040 14 H 0.066 0.934 15 C -0.225 4.225 16 C -0.002 4.002 17 N -0.115 5.115 18 C -0.147 4.147 19 C -0.227 4.227 20 N -0.261 5.261 21 C -0.122 4.122 22 H 0.074 0.926 23 H 0.048 0.952 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.148 0.852 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.054 0.946 30 H 0.139 0.861 31 H 0.127 0.873 32 H 0.200 0.800 33 H 0.184 0.816 34 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 5.289 -2.415 11.885 13.231 hybrid contribution -0.750 0.939 -0.600 1.343 sum 4.538 -1.477 11.285 12.253 Atomic orbital electron populations 1.21744 0.97854 0.99696 0.99451 1.18817 0.91576 0.90281 0.87714 1.00953 1.21292 1.29483 1.11231 0.91074 0.94081 1.25499 0.95860 0.95843 1.01215 1.69978 1.38284 1.24184 1.23675 0.85875 0.78330 0.78847 0.80062 1.20509 1.20646 1.20879 1.60564 1.02852 1.60495 1.06712 1.21851 0.91841 0.93158 0.97188 0.93408 1.22315 1.03554 0.96980 0.99651 1.22162 1.02673 0.83752 0.91573 1.45388 1.15609 1.17234 1.33298 1.22762 0.98259 0.89269 1.04385 1.22412 0.94391 1.03273 1.02652 1.70103 1.20634 1.09745 1.25625 1.25216 0.94628 0.97410 0.94901 0.92605 0.95228 0.94542 0.93201 0.85198 0.90508 0.89899 0.94576 0.86148 0.87275 0.79981 0.81559 0.76425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.98 8.92 71.99 0.64 -5.34 16 2 C 0.22 10.74 2.42 44.17 0.11 10.85 16 3 H -0.03 -1.44 7.23 -2.39 -0.02 -1.46 16 4 C -0.49 -27.34 8.56 25.60 0.22 -27.12 16 5 H 0.04 2.42 7.81 -2.91 -0.02 2.40 16 6 C 0.01 0.78 5.30 84.65 0.45 1.23 16 7 N -0.92 -53.49 11.38 21.45 0.24 -53.24 16 8 Si 0.94 46.80 29.54 68.60 2.03 48.82 16 9 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 10 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 11 H -0.28 -14.18 7.11 99.48 0.71 -13.48 16 12 N -0.68 -24.66 5.75 -473.29 -2.72 -27.38 16 13 C 0.07 2.14 2.63 44.92 0.12 2.26 16 14 H 0.05 1.85 7.67 -2.38 -0.02 1.84 16 15 C -0.17 -3.90 9.17 71.98 0.66 -3.24 16 16 C 0.12 2.73 5.78 86.38 0.50 3.23 16 17 N -0.44 -13.18 2.69 -529.07 -1.42 -14.61 16 18 C -0.01 -0.37 11.34 83.09 0.94 0.57 16 19 C -0.08 -2.95 11.87 83.52 0.99 -1.96 16 20 N -0.54 -21.27 11.25 -200.32 -2.25 -23.52 16 21 C 0.16 5.35 12.56 180.26 2.26 7.62 16 22 H 0.06 2.92 6.24 -2.39 -0.01 2.91 16 23 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.04 1.41 8.00 -2.39 -0.02 1.39 16 25 H 0.26 14.50 8.31 -92.71 -0.77 13.72 16 26 H 0.33 10.42 7.91 -89.69 -0.71 9.71 16 27 H 0.08 1.46 8.04 -2.38 -0.02 1.45 16 28 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.04 1.05 7.57 -2.39 -0.02 1.03 16 30 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.18 5.16 8.06 -2.91 -0.02 5.14 16 33 H 0.17 5.45 8.06 -2.91 -0.02 5.42 16 34 H 0.22 5.66 8.06 -2.91 -0.02 5.63 16 Total: -1.00 -68.52 286.00 3.13 -65.39 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.36 Total: 16.44 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 6.89 Total: -11.90 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -6.15 Total: -118.75 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.82 kcal Total: -68.52 3.13 -65.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049235358.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.476 kcal (2) G-P(sol) polarization free energy of solvation -68.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds