Wall clock time and date at job start Mon Mar 30 2020 02:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.53002 * 109.47179 * 120.00617 * 2 1 3 5 5 N 1.46498 * 109.46994 * 185.00094 * 4 2 1 6 6 C 1.36885 * 126.39725 * 269.70948 * 5 4 2 7 7 C 1.34664 * 106.81693 * 179.84500 * 6 5 4 8 8 N 1.34120 * 108.02171 * 0.42367 * 7 6 5 9 9 C 1.30500 * 109.25609 * 359.72895 * 8 7 6 10 10 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 11 11 C 1.46899 * 111.00029 * 85.00270 * 10 2 1 12 12 C 1.52997 * 109.47254 * 179.97438 * 11 10 2 13 13 C 1.50697 * 109.47466 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00362 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99850 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47052 * 89.99717 * 17 15 13 19 19 H 1.48495 * 109.47307 * 209.99656 * 17 15 13 20 20 H 1.48500 * 109.47143 * 330.00164 * 17 15 13 21 21 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 23 23 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 24 24 H 1.08995 * 109.46658 * 304.99898 * 4 2 1 25 25 H 1.09003 * 109.46922 * 64.99638 * 4 2 1 26 26 H 1.08003 * 126.58811 * 359.97438 * 6 5 4 27 27 H 1.08002 * 125.98422 * 180.11849 * 7 6 5 28 28 H 1.08002 * 125.64841 * 180.02562 * 9 8 7 29 29 H 1.00908 * 110.99583 * 208.95182 * 10 2 1 30 30 H 1.09002 * 109.47043 * 299.99792 * 11 10 2 31 31 H 1.09001 * 109.47354 * 59.99854 * 11 10 2 32 32 H 1.09002 * 109.47153 * 300.00004 * 12 11 10 33 33 H 1.08998 * 109.47533 * 59.99633 * 12 11 10 34 34 H 0.96994 * 119.99814 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5000 -0.6180 1.3109 6 6 4.4001 -1.4981 0.7732 7 6 5.6275 -1.0227 1.0579 8 7 5.4809 0.1115 1.7585 9 6 4.2093 0.3602 1.9138 10 7 2.0196 -0.6925 -1.1995 11 6 2.0824 0.2227 -2.3469 12 6 2.5961 -0.5327 -3.5742 13 6 2.6600 0.4060 -4.7515 14 1 2.3642 1.4382 -4.6357 15 6 3.0971 -0.0527 -5.9760 16 7 3.1533 0.7666 -7.0033 17 14 3.6107 -1.8376 -6.1758 18 1 2.4324 -2.6506 -6.5704 19 1 4.6553 -1.9375 -7.2265 20 1 4.1527 -2.3436 -4.8891 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.6054 -0.2619 2.1369 25 1 1.7516 -1.7717 1.2054 26 1 4.1700 -2.3992 0.2242 27 1 6.5654 -1.4780 0.7760 28 1 3.7931 1.2081 2.4375 29 1 2.9173 -1.1205 -1.0288 30 1 1.0870 0.6165 -2.5525 31 1 2.7588 1.0463 -2.1182 32 1 3.5916 -0.9261 -3.3684 33 1 1.9201 -1.3565 -3.8032 34 1 3.4604 0.4437 -7.8648 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049235575.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:53 Heat of formation + Delta-G solvation = 54.374336 kcal Electronic energy + Delta-G solvation = -15116.437087 eV Core-core repulsion = 12664.141437 eV Total energy + Delta-G solvation = -2452.295650 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.05843 -37.46069 -34.15638 -32.72595 -31.29843 -29.48312 -28.58682 -26.57865 -24.06835 -21.48797 -21.26388 -20.52735 -20.32031 -17.43451 -16.81054 -16.15318 -15.33219 -14.51878 -14.34520 -14.04057 -13.97323 -13.50405 -13.25134 -12.86943 -12.65490 -12.35320 -12.16305 -11.90555 -11.46865 -11.29288 -10.93728 -10.20903 -9.97463 -9.87647 -9.81486 -9.52839 -9.25765 -8.55743 -8.52182 -8.11442 -6.06066 -4.04840 2.06098 2.74711 3.21257 3.31131 3.38157 3.42455 4.23126 4.44474 4.60672 4.70056 4.79347 4.84320 4.98535 5.28290 5.33744 5.44642 5.49902 5.69273 5.72022 5.90846 6.09872 6.15291 6.23141 6.27933 6.71828 6.75128 7.02841 7.16410 7.32295 7.48093 7.63806 7.82192 8.08326 8.50603 8.97326 9.55956 11.07262 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.027515 B = 0.006875 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.400381 B = 4071.595906 C = 4615.232694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.065 3.935 3 H 0.048 0.952 4 C 0.100 3.900 5 N -0.459 5.459 6 C -0.054 4.054 7 C -0.030 4.030 8 N -0.497 5.497 9 C 0.177 3.823 10 N -0.690 5.690 11 C 0.075 3.925 12 C -0.008 4.008 13 C -0.522 4.522 14 H 0.070 0.930 15 C 0.068 3.932 16 N -0.903 5.903 17 Si 0.883 3.117 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.265 1.265 21 H 0.063 0.937 22 H 0.054 0.946 23 H 0.065 0.935 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.176 0.824 27 H 0.169 0.831 28 H 0.201 0.799 29 H 0.335 0.665 30 H 0.066 0.934 31 H 0.021 0.979 32 H 0.012 0.988 33 H 0.020 0.980 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.863 -4.624 18.033 18.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.046 4.046 3 H 0.066 0.934 4 C -0.023 4.023 5 N -0.142 5.142 6 C -0.187 4.187 7 C -0.178 4.178 8 N -0.215 5.215 9 C -0.105 4.105 10 N -0.323 5.323 11 C -0.053 4.053 12 C -0.046 4.046 13 C -0.561 4.561 14 H 0.088 0.912 15 C -0.134 4.134 16 N -0.542 5.542 17 Si 0.710 3.290 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.190 1.190 21 H 0.082 0.918 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.116 0.884 25 H 0.118 0.882 26 H 0.193 0.807 27 H 0.186 0.814 28 H 0.218 0.782 29 H 0.154 0.846 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.031 0.969 33 H 0.039 0.961 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.940 -4.383 17.967 18.726 hybrid contribution 0.370 -0.792 -0.460 0.988 sum -2.570 -5.175 17.507 18.436 Atomic orbital electron populations 1.21730 0.93340 1.02645 1.01821 1.21910 0.96732 0.96415 0.89522 0.93394 1.22244 0.76354 1.03922 0.99734 1.45641 1.07463 1.19941 1.41126 1.22819 0.89877 0.99333 1.06686 1.22307 0.97335 0.95111 1.03049 1.70268 1.16471 1.16212 1.18542 1.24948 0.87384 0.95864 1.02313 1.60828 1.33294 1.34189 1.03966 1.21997 1.00173 0.93313 0.89829 1.19526 0.95698 0.96535 0.92839 1.21042 1.44447 0.97715 0.92876 0.91158 1.25006 0.94945 0.97672 0.95755 1.69913 1.47648 1.35377 1.01228 0.86729 0.78644 0.85554 0.78054 1.20247 1.21408 1.19004 0.91758 0.92713 0.91579 0.88422 0.88181 0.80696 0.81418 0.78241 0.84559 0.91577 0.96043 0.96947 0.96121 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.41 37.16 0.35 -1.11 16 2 C 0.07 0.80 2.88 -67.71 -0.19 0.60 16 3 H 0.05 0.65 7.80 -51.93 -0.40 0.24 16 4 C 0.10 0.94 5.70 -4.04 -0.02 0.92 16 5 N -0.46 -5.35 2.61 -118.58 -0.31 -5.66 16 6 C -0.05 -0.68 9.77 -16.56 -0.16 -0.84 16 7 C -0.03 -0.42 11.87 -17.82 -0.21 -0.63 16 8 N -0.50 -7.52 11.25 -14.67 -0.17 -7.68 16 9 C 0.18 2.20 12.56 -90.38 -1.14 1.07 16 10 N -0.69 -11.09 6.31 -106.72 -0.67 -11.76 16 11 C 0.07 1.51 5.42 -3.83 -0.02 1.49 16 12 C -0.01 -0.20 4.30 -27.89 -0.12 -0.32 16 13 C -0.52 -15.12 9.66 -34.44 -0.33 -15.46 16 14 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 15 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 16 N -0.90 -28.14 13.96 55.43 0.77 -27.36 16 17 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 21 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.07 0.82 7.45 -51.92 -0.39 0.43 16 24 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.18 1.85 7.87 -52.48 -0.41 1.44 16 27 H 0.17 1.98 8.06 -52.49 -0.42 1.56 16 28 H 0.20 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.34 5.36 6.03 -39.29 -0.24 5.13 16 30 H 0.07 1.34 7.44 -51.93 -0.39 0.95 16 31 H 0.02 0.45 8.06 -51.93 -0.42 0.04 16 32 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 33 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 34 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 283.79 15.07 4.28 4.28 Total: -1.00 -33.23 283.79 -7.85 -41.08 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -5.14 Total: 2.12 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -1.95 Total: -12.37 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -0.37 Total: -52.46 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -33.23 -7.85 -41.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049235575.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.456 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds