Wall clock time and date at job start Mon Mar 30 2020 02:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.53002 * 109.47179 * 120.00617 * 2 1 3 5 5 N 1.46498 * 109.46994 * 185.00094 * 4 2 1 6 6 C 1.36885 * 126.39725 * 269.70948 * 5 4 2 7 7 C 1.34664 * 106.81693 * 179.84500 * 6 5 4 8 8 N 1.34120 * 108.02171 * 0.42367 * 7 6 5 9 9 C 1.30500 * 109.25609 * 359.72895 * 8 7 6 10 10 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 11 11 C 1.46899 * 111.00029 * 85.00270 * 10 2 1 12 12 C 1.52997 * 109.47254 * 179.97438 * 11 10 2 13 13 C 1.50697 * 109.47466 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00362 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99850 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47052 * 89.99717 * 17 15 13 19 19 H 1.48495 * 109.47307 * 209.99656 * 17 15 13 20 20 H 1.48500 * 109.47143 * 330.00164 * 17 15 13 21 21 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 23 23 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 24 24 H 1.08995 * 109.46658 * 304.99898 * 4 2 1 25 25 H 1.09003 * 109.46922 * 64.99638 * 4 2 1 26 26 H 1.08003 * 126.58811 * 359.97438 * 6 5 4 27 27 H 1.08002 * 125.98422 * 180.11849 * 7 6 5 28 28 H 1.08002 * 125.64841 * 180.02562 * 9 8 7 29 29 H 1.00908 * 110.99583 * 208.95182 * 10 2 1 30 30 H 1.09002 * 109.47043 * 299.99792 * 11 10 2 31 31 H 1.09001 * 109.47354 * 59.99854 * 11 10 2 32 32 H 1.09002 * 109.47153 * 300.00004 * 12 11 10 33 33 H 1.08998 * 109.47533 * 59.99633 * 12 11 10 34 34 H 0.96994 * 119.99814 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5000 -0.6180 1.3109 6 6 4.4001 -1.4981 0.7732 7 6 5.6275 -1.0227 1.0579 8 7 5.4809 0.1115 1.7585 9 6 4.2093 0.3602 1.9138 10 7 2.0196 -0.6925 -1.1995 11 6 2.0824 0.2227 -2.3469 12 6 2.5961 -0.5327 -3.5742 13 6 2.6600 0.4060 -4.7515 14 1 2.3642 1.4382 -4.6357 15 6 3.0971 -0.0527 -5.9760 16 7 3.1533 0.7666 -7.0033 17 14 3.6107 -1.8376 -6.1758 18 1 2.4324 -2.6506 -6.5704 19 1 4.6553 -1.9375 -7.2265 20 1 4.1527 -2.3436 -4.8891 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.6054 -0.2619 2.1369 25 1 1.7516 -1.7717 1.2054 26 1 4.1700 -2.3992 0.2242 27 1 6.5654 -1.4780 0.7760 28 1 3.7931 1.2081 2.4375 29 1 2.9173 -1.1205 -1.0288 30 1 1.0870 0.6165 -2.5525 31 1 2.7588 1.0463 -2.1182 32 1 3.5916 -0.9261 -3.3684 33 1 1.9201 -1.3565 -3.8032 34 1 3.4604 0.4437 -7.8648 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049235575.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:52 Heat of formation + Delta-G solvation = 32.221337 kcal Electronic energy + Delta-G solvation = -15117.397714 eV Core-core repulsion = 12664.141437 eV Total energy + Delta-G solvation = -2453.256277 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.98342 -38.62605 -35.74965 -34.39520 -32.74858 -30.58527 -30.02607 -27.45277 -25.88826 -22.55677 -22.44202 -21.94351 -21.42909 -18.99656 -18.30517 -17.33318 -16.40619 -16.31470 -15.73268 -15.18916 -15.09914 -14.80906 -14.59107 -14.35402 -13.90218 -13.58663 -13.18936 -13.06668 -12.91900 -12.79636 -12.34174 -11.92778 -11.73294 -11.65471 -11.46294 -10.95700 -10.80388 -10.53268 -9.56635 -9.36787 -8.33312 -6.38783 1.13553 1.34844 1.36929 1.49253 1.91297 2.22482 2.34047 3.02068 3.13256 3.72243 3.87562 3.93496 3.99629 4.20148 4.35727 4.39393 4.49442 4.59684 4.68362 4.79570 4.85606 4.89691 5.01325 5.22965 5.33741 5.37947 5.43238 5.58263 5.81080 6.02639 6.19835 6.29756 6.39401 6.69145 7.13703 7.26384 8.83459 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.027515 B = 0.006875 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.400381 B = 4071.595906 C = 4615.232694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.063 3.937 3 H 0.035 0.965 4 C 0.106 3.894 5 N -0.458 5.458 6 C -0.056 4.056 7 C -0.058 4.058 8 N -0.539 5.539 9 C 0.175 3.825 10 N -0.686 5.686 11 C 0.090 3.910 12 C -0.002 4.002 13 C -0.538 4.538 14 H 0.029 0.971 15 C 0.005 3.995 16 N -0.950 5.950 17 Si 0.956 3.044 18 H -0.264 1.264 19 H -0.283 1.283 20 H -0.247 1.247 21 H 0.070 0.930 22 H 0.087 0.913 23 H 0.041 0.959 24 H 0.136 0.864 25 H 0.115 0.885 26 H 0.193 0.807 27 H 0.175 0.825 28 H 0.231 0.769 29 H 0.337 0.663 30 H 0.060 0.940 31 H 0.003 0.997 32 H 0.014 0.986 33 H 0.026 0.974 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.644 -6.539 19.813 21.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.048 4.048 3 H 0.053 0.947 4 C -0.016 4.016 5 N -0.141 5.141 6 C -0.189 4.189 7 C -0.205 4.205 8 N -0.258 5.258 9 C -0.107 4.107 10 N -0.319 5.319 11 C -0.039 4.039 12 C -0.039 4.039 13 C -0.576 4.576 14 H 0.047 0.953 15 C -0.192 4.192 16 N -0.590 5.590 17 Si 0.779 3.221 18 H -0.189 1.189 19 H -0.209 1.209 20 H -0.170 1.170 21 H 0.089 0.911 22 H 0.106 0.894 23 H 0.060 0.940 24 H 0.154 0.846 25 H 0.133 0.867 26 H 0.210 0.790 27 H 0.193 0.807 28 H 0.247 0.753 29 H 0.156 0.844 30 H 0.079 0.921 31 H 0.021 0.979 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.739 -6.300 19.775 21.089 hybrid contribution 0.570 -0.080 -0.994 1.149 sum -3.169 -6.380 18.781 20.087 Atomic orbital electron populations 1.21710 0.91848 1.03228 1.02296 1.22053 0.97814 0.95767 0.89132 0.94699 1.22397 0.74922 1.04823 0.99442 1.45794 1.08304 1.19441 1.40532 1.23118 0.89695 0.99846 1.06289 1.22623 0.98547 0.95456 1.03880 1.70227 1.18316 1.17263 1.20022 1.25564 0.86942 0.96458 1.01756 1.60759 1.33352 1.33393 1.04429 1.21612 0.99044 0.92918 0.90285 1.19402 0.95986 0.95843 0.92701 1.21392 1.44220 0.96918 0.95078 0.95284 1.26034 0.94847 1.03082 0.95218 1.70066 1.48938 1.38016 1.02021 0.85578 0.78699 0.79035 0.78834 1.18887 1.20910 1.17038 0.91080 0.89442 0.93974 0.84648 0.86707 0.78968 0.80732 0.75271 0.84395 0.92121 0.97896 0.96785 0.95594 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 9.41 71.98 0.68 -1.75 16 2 C 0.06 1.37 2.88 44.91 0.13 1.50 16 3 H 0.03 0.88 7.80 -2.39 -0.02 0.86 16 4 C 0.11 1.56 5.70 86.38 0.49 2.05 16 5 N -0.46 -9.44 2.61 -529.07 -1.38 -10.83 16 6 C -0.06 -1.30 9.77 83.08 0.81 -0.48 16 7 C -0.06 -1.57 11.87 83.52 0.99 -0.58 16 8 N -0.54 -15.91 11.25 -200.32 -2.25 -18.16 16 9 C 0.18 4.00 12.56 180.26 2.26 6.27 16 10 N -0.69 -20.74 6.31 -491.57 -3.10 -23.84 16 11 C 0.09 3.64 5.42 86.30 0.47 4.11 16 12 C 0.00 -0.07 4.30 29.85 0.13 0.05 16 13 C -0.54 -31.86 9.66 25.60 0.25 -31.61 16 14 H 0.03 1.89 7.99 -2.91 -0.02 1.87 16 15 C 0.01 0.31 5.47 84.65 0.46 0.77 16 16 N -0.95 -60.54 13.96 21.45 0.30 -60.25 16 17 Si 0.96 44.94 27.47 68.60 1.88 46.83 16 18 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.25 -10.79 6.54 99.48 0.65 -10.14 16 21 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 22 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.04 0.98 7.45 -2.38 -0.02 0.96 16 24 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.19 3.59 7.87 -2.91 -0.02 3.57 16 27 H 0.18 4.11 8.06 -2.91 -0.02 4.09 16 28 H 0.23 3.42 8.06 -2.91 -0.02 3.40 16 29 H 0.34 10.02 6.03 -89.69 -0.54 9.48 16 30 H 0.06 2.48 7.44 -2.39 -0.02 2.47 16 31 H 0.00 0.12 8.06 -2.39 -0.02 0.10 16 32 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 33 H 0.03 1.21 7.57 -2.39 -0.02 1.20 16 34 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -73.73 283.79 2.60 -71.13 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.47 Total: 14.79 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: 6.67 Total: -19.67 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -6.44 Total: -113.07 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.83 kcal Total: -73.73 2.60 -71.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049235575.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.352 kcal (2) G-P(sol) polarization free energy of solvation -73.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds