Wall clock time and date at job start Mon Mar 30 2020 02:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47206 * 2 1 4 4 C 1.52999 * 109.47543 * 240.00069 * 2 1 3 5 5 N 1.46503 * 109.47551 * 174.99831 * 4 2 1 6 6 C 1.36884 * 126.39494 * 269.71709 * 5 4 2 7 7 C 1.34669 * 106.81372 * 180.26001 * 6 5 4 8 8 N 1.34128 * 108.02336 * 359.97438 * 7 6 5 9 9 C 1.30498 * 109.25660 * 0.02562 * 8 7 6 10 10 N 1.46906 * 109.47270 * 119.99853 * 2 1 3 11 11 C 1.46900 * 110.99820 * 275.00059 * 10 2 1 12 12 C 1.52996 * 109.47248 * 179.97438 * 11 10 2 13 13 C 1.50701 * 109.47454 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99955 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99815 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00147 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99673 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47364 * 359.97438 * 17 15 13 19 19 H 1.48508 * 109.47018 * 119.99395 * 17 15 13 20 20 H 1.48502 * 109.47277 * 239.99524 * 17 15 13 21 21 H 1.08996 * 109.47536 * 300.00071 * 1 2 3 22 22 H 1.08994 * 109.47533 * 60.00293 * 1 2 3 23 23 H 1.09003 * 109.46772 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46878 * 54.99787 * 4 2 1 25 25 H 1.09007 * 109.46943 * 294.99802 * 4 2 1 26 26 H 1.07996 * 126.59325 * 0.22285 * 6 5 4 27 27 H 1.07999 * 125.98967 * 179.97438 * 7 6 5 28 28 H 1.08003 * 125.65471 * 180.02562 * 9 8 7 29 29 H 1.00897 * 110.99793 * 38.95379 * 10 2 1 30 30 H 1.08997 * 109.47501 * 300.00427 * 11 10 2 31 31 H 1.09007 * 109.47314 * 59.99899 * 11 10 2 32 32 H 1.09007 * 109.47267 * 300.00491 * 12 11 10 33 33 H 1.09007 * 109.46977 * 59.99776 * 12 11 10 34 34 H 0.97007 * 120.00072 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.6178 -1.3109 6 6 4.2190 0.3712 -1.9263 7 6 5.5206 0.0761 -1.7467 8 7 5.5944 -1.0618 -1.0404 9 6 4.3881 -1.4833 -0.7760 10 7 2.0197 -0.6925 1.1995 11 6 2.0824 0.2227 2.3469 12 6 2.5950 -0.5330 3.5745 13 6 2.6588 0.4056 4.7518 14 1 2.3637 1.4380 4.6359 15 6 3.0950 -0.0534 5.9766 16 7 3.4548 -1.3104 6.1176 17 14 3.1747 1.1103 7.4356 18 1 2.7196 2.4606 7.0174 19 1 2.2953 0.6050 8.5204 20 1 4.5731 1.1905 7.9290 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5137 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.6054 -0.2617 -2.1369 25 1 1.7517 -1.7715 -1.2055 26 1 3.8192 1.2240 -2.4549 27 1 6.3582 0.6542 -2.1080 28 1 4.1407 -2.3760 -0.2207 29 1 1.4496 -1.4979 1.4101 30 1 2.7587 1.0463 2.1182 31 1 1.0870 0.6164 2.5525 32 1 1.9183 -1.3565 3.8031 33 1 3.5904 -0.9271 3.3691 34 1 3.7613 -1.6335 6.9794 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049235576.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:55 Heat of formation + Delta-G solvation = 50.214818 kcal Electronic energy + Delta-G solvation = -15032.824842 eV Core-core repulsion = 12580.348822 eV Total energy + Delta-G solvation = -2452.476021 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.66637 -37.38870 -34.01403 -32.73945 -30.97334 -29.10296 -28.03719 -26.38988 -24.05669 -21.38304 -21.03381 -20.68217 -20.30449 -17.25989 -16.39419 -15.18008 -15.05801 -14.81222 -14.38939 -13.92285 -13.77509 -13.39202 -13.02048 -12.62550 -12.53572 -12.34863 -12.16509 -11.70409 -11.20031 -11.02943 -10.95973 -10.54563 -10.09138 -9.63763 -9.51946 -9.24500 -9.13885 -8.37063 -8.17427 -7.94195 -6.00828 -4.03537 2.38999 3.09526 3.30703 3.38175 3.41785 3.55840 4.32450 4.50006 4.77701 4.88147 5.04640 5.11994 5.17378 5.28666 5.35424 5.40576 5.66423 5.70927 5.80370 5.96778 6.02569 6.28118 6.33867 6.58694 6.92146 7.04173 7.34821 7.51933 7.66742 7.75847 7.88341 8.04884 8.41079 8.45014 9.03539 9.60483 11.10617 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.029556 B = 0.006187 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.121785 B = 4524.699790 C = 5061.792902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.064 3.936 3 H 0.080 0.920 4 C 0.117 3.883 5 N -0.445 5.445 6 C -0.072 4.072 7 C -0.033 4.033 8 N -0.508 5.508 9 C 0.218 3.782 10 N -0.683 5.683 11 C 0.071 3.929 12 C 0.027 3.973 13 C -0.522 4.522 14 H 0.053 0.947 15 C 0.058 3.942 16 N -0.892 5.892 17 Si 0.892 3.108 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.283 1.283 21 H 0.064 0.936 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.165 0.835 27 H 0.162 0.838 28 H 0.201 0.799 29 H 0.337 0.663 30 H 0.055 0.945 31 H 0.016 0.984 32 H 0.013 0.987 33 H 0.026 0.974 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.367 1.613 -16.028 16.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.048 4.048 3 H 0.098 0.902 4 C -0.007 4.007 5 N -0.126 5.126 6 C -0.205 4.205 7 C -0.181 4.181 8 N -0.226 5.226 9 C -0.065 4.065 10 N -0.314 5.314 11 C -0.057 4.057 12 C -0.011 4.011 13 C -0.561 4.561 14 H 0.072 0.928 15 C -0.143 4.143 16 N -0.531 5.531 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 H 0.083 0.917 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.105 0.895 25 H 0.109 0.891 26 H 0.182 0.818 27 H 0.179 0.821 28 H 0.217 0.783 29 H 0.155 0.845 30 H 0.074 0.926 31 H 0.034 0.966 32 H 0.031 0.969 33 H 0.044 0.956 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.054 1.180 -15.813 16.367 hybrid contribution -1.718 1.215 0.954 2.310 sum -5.772 2.395 -14.859 16.120 Atomic orbital electron populations 1.22433 0.96419 1.02407 1.02595 1.21930 0.92813 0.98616 0.91400 0.90187 1.21946 0.77250 1.02849 0.98613 1.45340 1.07202 1.19723 1.40309 1.22552 0.93028 0.97283 1.07612 1.22179 0.95203 0.96897 1.03826 1.70303 1.22579 1.12690 1.17049 1.24894 0.83511 0.97809 1.00336 1.60666 1.56034 1.10306 1.04346 1.22146 0.98074 0.95124 0.90384 1.19054 0.97029 0.95231 0.89776 1.21182 1.44067 0.96349 0.94510 0.92830 1.24994 0.95308 0.95109 0.98890 1.69977 1.44378 1.14357 1.24389 0.86541 0.77749 0.81095 0.82635 1.19818 1.21005 1.20898 0.91694 0.92336 0.92149 0.89489 0.89052 0.81764 0.82104 0.78256 0.84479 0.92600 0.96566 0.96877 0.95597 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 9.16 37.15 0.34 -1.47 16 2 C 0.06 0.79 2.83 -67.71 -0.19 0.59 16 3 H 0.08 1.11 7.80 -51.93 -0.40 0.70 16 4 C 0.12 1.20 5.79 -4.04 -0.02 1.17 16 5 N -0.44 -5.92 2.70 -118.57 -0.32 -6.24 16 6 C -0.07 -0.94 11.58 -16.56 -0.19 -1.13 16 7 C -0.03 -0.50 11.87 -17.81 -0.21 -0.71 16 8 N -0.51 -9.01 11.25 -14.66 -0.16 -9.17 16 9 C 0.22 3.41 12.29 -90.38 -1.11 2.30 16 10 N -0.68 -10.96 5.91 -106.73 -0.63 -11.60 16 11 C 0.07 1.44 5.42 -3.83 -0.02 1.42 16 12 C 0.03 0.69 5.23 -27.88 -0.15 0.54 16 13 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 14 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -27.09 13.29 55.43 0.74 -26.36 16 17 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H 0.06 0.76 7.45 -51.93 -0.39 0.38 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 24 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.17 1.61 8.06 -52.49 -0.42 1.18 16 27 H 0.16 2.02 8.06 -52.49 -0.42 1.59 16 28 H 0.20 2.82 8.06 -52.48 -0.42 2.39 16 29 H 0.34 5.12 8.47 -39.29 -0.33 4.79 16 30 H 0.06 1.21 8.05 -51.93 -0.42 0.79 16 31 H 0.02 0.32 7.44 -51.93 -0.39 -0.06 16 32 H 0.01 0.35 8.14 -51.92 -0.42 -0.07 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 291.02 15.07 4.39 4.39 Total: -1.00 -32.86 291.02 -8.26 -41.12 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -5.27 Total: 1.92 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -1.97 Total: -10.92 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.38 Total: -53.37 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.86 -8.26 -41.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049235576.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.330 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds