Wall clock time and date at job start Mon Mar 30 2020 02:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47206 * 2 1 4 4 C 1.52999 * 109.47543 * 240.00069 * 2 1 3 5 5 N 1.46503 * 109.47551 * 174.99831 * 4 2 1 6 6 C 1.36884 * 126.39494 * 269.71709 * 5 4 2 7 7 C 1.34669 * 106.81372 * 180.26001 * 6 5 4 8 8 N 1.34128 * 108.02336 * 359.97438 * 7 6 5 9 9 C 1.30498 * 109.25660 * 0.02562 * 8 7 6 10 10 N 1.46906 * 109.47270 * 119.99853 * 2 1 3 11 11 C 1.46900 * 110.99820 * 275.00059 * 10 2 1 12 12 C 1.52996 * 109.47248 * 179.97438 * 11 10 2 13 13 C 1.50701 * 109.47454 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99955 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99815 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00147 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99673 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47364 * 359.97438 * 17 15 13 19 19 H 1.48508 * 109.47018 * 119.99395 * 17 15 13 20 20 H 1.48502 * 109.47277 * 239.99524 * 17 15 13 21 21 H 1.08996 * 109.47536 * 300.00071 * 1 2 3 22 22 H 1.08994 * 109.47533 * 60.00293 * 1 2 3 23 23 H 1.09003 * 109.46772 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46878 * 54.99787 * 4 2 1 25 25 H 1.09007 * 109.46943 * 294.99802 * 4 2 1 26 26 H 1.07996 * 126.59325 * 0.22285 * 6 5 4 27 27 H 1.07999 * 125.98967 * 179.97438 * 7 6 5 28 28 H 1.08003 * 125.65471 * 180.02562 * 9 8 7 29 29 H 1.00897 * 110.99793 * 38.95379 * 10 2 1 30 30 H 1.08997 * 109.47501 * 300.00427 * 11 10 2 31 31 H 1.09007 * 109.47314 * 59.99899 * 11 10 2 32 32 H 1.09007 * 109.47267 * 300.00491 * 12 11 10 33 33 H 1.09007 * 109.46977 * 59.99776 * 12 11 10 34 34 H 0.97007 * 120.00072 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.6178 -1.3109 6 6 4.2190 0.3712 -1.9263 7 6 5.5206 0.0761 -1.7467 8 7 5.5944 -1.0618 -1.0404 9 6 4.3881 -1.4833 -0.7760 10 7 2.0197 -0.6925 1.1995 11 6 2.0824 0.2227 2.3469 12 6 2.5950 -0.5330 3.5745 13 6 2.6588 0.4056 4.7518 14 1 2.3637 1.4380 4.6359 15 6 3.0950 -0.0534 5.9766 16 7 3.4548 -1.3104 6.1176 17 14 3.1747 1.1103 7.4356 18 1 2.7196 2.4606 7.0174 19 1 2.2953 0.6050 8.5204 20 1 4.5731 1.1905 7.9290 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5137 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.6054 -0.2617 -2.1369 25 1 1.7517 -1.7715 -1.2055 26 1 3.8192 1.2240 -2.4549 27 1 6.3582 0.6542 -2.1080 28 1 4.1407 -2.3760 -0.2207 29 1 1.4496 -1.4979 1.4101 30 1 2.7587 1.0463 2.1182 31 1 1.0870 0.6164 2.5525 32 1 1.9183 -1.3565 3.8031 33 1 3.5904 -0.9271 3.3691 34 1 3.7613 -1.6335 6.9794 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049235576.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:54 Heat of formation + Delta-G solvation = 28.950758 kcal Electronic energy + Delta-G solvation = -15033.746921 eV Core-core repulsion = 12580.348822 eV Total energy + Delta-G solvation = -2453.398099 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.74635 -38.59215 -35.71386 -34.36885 -32.46981 -30.18820 -29.69218 -27.29122 -25.99576 -22.63679 -22.43771 -22.00552 -21.42220 -18.55642 -18.28676 -16.64439 -16.29310 -16.10970 -16.08714 -15.15276 -14.86595 -14.57781 -14.37440 -14.09696 -13.96459 -13.53207 -13.11836 -13.08216 -12.89255 -12.82466 -12.38936 -12.10268 -11.95824 -11.45256 -11.26973 -10.79386 -10.59828 -10.41802 -9.26390 -9.25336 -8.23141 -6.34666 1.32183 1.37249 1.38669 1.51194 2.13251 2.37778 2.39645 3.10504 3.26096 3.84146 3.99983 4.04610 4.14446 4.31483 4.36751 4.45230 4.55798 4.65905 4.71006 4.83948 4.91166 4.97796 5.03904 5.25609 5.41235 5.52326 5.65310 5.76265 5.99374 6.10912 6.24016 6.45047 6.57481 6.83076 7.33243 7.34858 8.89093 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.029556 B = 0.006187 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.121785 B = 4524.699790 C = 5061.792902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.066 3.934 3 H 0.066 0.934 4 C 0.118 3.882 5 N -0.442 5.442 6 C -0.056 4.056 7 C -0.067 4.067 8 N -0.553 5.553 9 C 0.196 3.804 10 N -0.690 5.690 11 C 0.094 3.906 12 C 0.035 3.965 13 C -0.546 4.546 14 H 0.057 0.943 15 C 0.001 3.999 16 N -0.930 5.930 17 Si 0.965 3.035 18 H -0.262 1.262 19 H -0.274 1.274 20 H -0.279 1.279 21 H 0.045 0.955 22 H 0.087 0.913 23 H 0.072 0.928 24 H 0.126 0.874 25 H 0.107 0.893 26 H 0.203 0.797 27 H 0.176 0.824 28 H 0.204 0.796 29 H 0.343 0.657 30 H 0.041 0.959 31 H 0.022 0.978 32 H -0.005 1.005 33 H -0.012 1.012 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.991 2.941 -17.089 18.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.045 4.045 3 H 0.084 0.916 4 C -0.005 4.005 5 N -0.122 5.122 6 C -0.190 4.190 7 C -0.214 4.214 8 N -0.273 5.273 9 C -0.087 4.087 10 N -0.321 5.321 11 C -0.035 4.035 12 C -0.003 4.003 13 C -0.584 4.584 14 H 0.075 0.925 15 C -0.197 4.197 16 N -0.570 5.570 17 Si 0.790 3.210 18 H -0.186 1.186 19 H -0.200 1.200 20 H -0.205 1.205 21 H 0.064 0.936 22 H 0.106 0.894 23 H 0.091 0.909 24 H 0.144 0.856 25 H 0.125 0.875 26 H 0.220 0.780 27 H 0.193 0.807 28 H 0.220 0.780 29 H 0.162 0.838 30 H 0.060 0.940 31 H 0.041 0.959 32 H 0.013 0.987 33 H 0.006 0.994 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.707 2.508 -16.898 18.011 hybrid contribution -1.216 0.787 1.227 1.898 sum -6.923 3.295 -15.671 17.447 Atomic orbital electron populations 1.22336 0.94171 1.03419 1.03067 1.21994 0.94540 0.97676 0.90247 0.91564 1.22198 0.75342 1.04119 0.98798 1.45529 1.08309 1.19038 1.39339 1.23126 0.92385 0.97420 1.06075 1.22615 0.97057 0.96930 1.04762 1.70219 1.24204 1.14361 1.18499 1.24985 0.83823 0.98691 1.01229 1.60521 1.57449 1.10046 1.04088 1.21634 0.97489 0.94464 0.89884 1.18881 0.94658 0.94814 0.91935 1.21635 1.44135 0.96932 0.95738 0.92457 1.25965 0.94696 0.96847 1.02189 1.70107 1.45146 1.16382 1.25391 0.85400 0.77912 0.79094 0.78642 1.18638 1.19966 1.20516 0.93609 0.89443 0.90900 0.85600 0.87464 0.77994 0.80711 0.77962 0.83833 0.94040 0.95945 0.98677 0.99387 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 9.16 71.98 0.66 -2.22 16 2 C 0.07 1.46 2.83 44.91 0.13 1.59 16 3 H 0.07 1.68 7.80 -2.39 -0.02 1.66 16 4 C 0.12 1.99 5.79 86.38 0.50 2.49 16 5 N -0.44 -10.93 2.70 -529.05 -1.43 -12.35 16 6 C -0.06 -1.35 11.58 83.09 0.96 -0.38 16 7 C -0.07 -1.97 11.87 83.52 0.99 -0.98 16 8 N -0.55 -19.99 11.25 -200.31 -2.25 -22.24 16 9 C 0.20 6.16 12.29 180.26 2.22 8.37 16 10 N -0.69 -21.72 5.91 -491.57 -2.91 -24.63 16 11 C 0.09 3.88 5.42 86.30 0.47 4.35 16 12 C 0.03 1.85 5.23 29.85 0.16 2.01 16 13 C -0.55 -31.70 9.11 25.60 0.23 -31.47 16 14 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 15 C 0.00 0.07 5.46 84.66 0.46 0.53 16 16 N -0.93 -57.64 13.29 21.45 0.28 -57.36 16 17 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 18 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 H 0.04 0.97 7.45 -2.39 -0.02 0.95 16 22 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.07 1.07 8.13 -2.39 -0.02 1.05 16 24 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 26 H 0.20 3.12 8.06 -2.91 -0.02 3.10 16 27 H 0.18 4.33 8.06 -2.91 -0.02 4.31 16 28 H 0.20 5.89 8.06 -2.91 -0.02 5.87 16 29 H 0.34 10.18 8.47 -89.70 -0.76 9.42 16 30 H 0.04 1.81 8.05 -2.39 -0.02 1.79 16 31 H 0.02 0.89 7.44 -2.38 -0.02 0.87 16 32 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 33 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 34 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 Total: -1.00 -73.29 291.02 2.81 -70.49 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.31 Total: 14.80 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: 6.77 Total: -15.71 kcal Atomic # 7 Polarization: -110.28 SS G_CDS: -6.30 Total: -116.58 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -73.29 2.81 -70.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049235576.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.438 kcal (2) G-P(sol) polarization free energy of solvation -73.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds