Wall clock time and date at job start Mon Mar 30 2020 02:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46905 * 109.47004 * 2 1 4 4 C 1.46897 * 110.99849 * 297.88683 * 3 2 1 5 5 C 1.50704 * 109.47295 * 290.67613 * 4 3 2 6 6 H 1.07995 * 119.99817 * 355.01110 * 5 4 3 7 7 C 1.37878 * 119.99814 * 175.00581 * 5 4 3 8 8 N 1.31511 * 120.00268 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99676 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47143 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46986 * 120.00253 * 9 7 5 12 12 H 1.48499 * 109.46949 * 240.00288 * 9 7 5 13 13 C 1.38494 * 110.99915 * 61.84435 * 3 2 1 14 14 N 1.31201 * 125.78677 * 253.86185 * 13 3 2 15 15 C 1.34390 * 109.30261 * 179.83678 * 14 13 3 16 16 C 1.34375 * 108.31757 * 0.42567 * 15 14 13 17 17 N 1.36019 * 125.79267 * 74.16531 * 13 3 2 18 18 C 1.46498 * 126.49702 * 359.97438 * 17 13 3 19 19 C 1.53008 * 109.46996 * 83.16782 * 18 17 13 20 20 H 1.08999 * 109.46675 * 67.03948 * 1 2 3 21 21 H 1.08998 * 109.47074 * 187.03710 * 1 2 3 22 22 H 1.08995 * 109.47319 * 307.04069 * 1 2 3 23 23 H 1.09001 * 109.46901 * 239.99992 * 2 1 3 24 24 H 1.08996 * 109.47203 * 119.99803 * 2 1 3 25 25 H 1.09003 * 109.46778 * 170.68039 * 4 3 2 26 26 H 1.09004 * 109.47235 * 50.67856 * 4 3 2 27 27 H 0.96998 * 119.99629 * 179.97438 * 8 7 5 28 28 H 1.07999 * 125.83890 * 180.17255 * 15 14 13 29 29 H 1.07997 * 126.52449 * 179.74711 * 16 15 14 30 30 H 1.08995 * 109.47313 * 203.16775 * 18 17 13 31 31 H 1.08995 * 109.46782 * 323.17426 * 18 17 13 32 32 H 1.08997 * 109.46692 * 180.02562 * 19 18 17 33 33 H 1.08999 * 109.47322 * 300.00572 * 19 18 17 34 34 H 1.09002 * 109.47013 * 60.00336 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5904 2.0951 -1.2122 5 6 2.3159 1.5328 -2.4074 6 1 3.0830 0.7850 -2.2707 7 6 2.0004 1.9731 -3.6753 8 7 1.0666 2.8841 -3.8416 9 14 2.8992 1.2755 -5.1568 10 1 3.8959 0.2722 -4.7039 11 1 1.9226 0.6261 -6.0677 12 1 3.5933 2.3734 -5.8767 13 6 1.6099 2.0563 1.1400 14 7 0.6723 2.9724 1.1956 15 6 0.5431 3.3994 2.4633 16 6 1.4320 2.7387 3.2241 17 7 2.1152 1.8820 2.3907 18 6 3.1835 0.9573 2.7778 19 6 4.5425 1.6026 2.4987 20 1 -0.3632 0.4009 -0.9463 21 1 -0.3633 -1.0199 0.1259 22 1 -0.3634 0.6190 0.8202 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.8214 3.1558 -1.1129 26 1 0.5161 1.9682 -1.3464 27 1 0.8449 3.1940 -4.7336 28 1 -0.1530 4.1487 2.8103 29 1 1.5818 2.8571 4.2871 30 1 3.1004 0.7306 3.8407 31 1 3.0934 0.0365 2.2017 32 1 5.3373 0.9144 2.7863 33 1 4.6256 1.8294 1.4358 34 1 4.6326 2.5235 3.0748 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050608003.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:12 Heat of formation + Delta-G solvation = 71.679100 kcal Electronic energy + Delta-G solvation = -15831.382806 eV Core-core repulsion = 13379.837546 eV Total energy + Delta-G solvation = -2451.545260 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.45278 -36.83582 -34.53944 -32.55604 -29.97200 -29.58029 -28.15490 -26.15649 -23.57805 -23.15414 -21.44385 -20.50493 -18.78281 -16.70725 -16.05518 -15.43717 -14.95577 -14.48618 -14.44480 -13.71078 -13.49258 -13.22642 -12.86330 -12.39597 -12.21065 -11.97599 -11.81414 -11.31175 -11.19710 -11.06551 -10.72320 -10.58228 -10.18750 -9.98894 -9.30050 -9.29216 -9.06876 -8.53379 -8.25231 -7.11159 -5.98641 -4.01920 2.55315 3.12535 3.32270 3.39673 3.43583 3.73099 4.42400 4.76705 4.87478 5.17290 5.23194 5.31325 5.36239 5.59141 5.71650 5.79920 5.82096 5.88577 6.02464 6.19231 6.26565 6.33373 6.55542 6.74117 6.86813 7.02208 7.22858 7.52338 7.65979 7.84258 8.00746 8.19078 8.61904 8.79700 9.06883 9.61215 11.11288 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.033053 B = 0.008305 C = 0.007800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.932961 B = 3370.657885 C = 3588.696855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.067 3.933 3 N -0.464 5.464 4 C 0.210 3.790 5 C -0.515 4.515 6 H 0.063 0.937 7 C 0.058 3.942 8 N -0.890 5.890 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.414 3.586 14 N -0.514 5.514 15 C -0.020 4.020 16 C -0.084 4.084 17 N -0.467 5.467 18 C 0.110 3.890 19 C -0.166 4.166 20 H 0.073 0.927 21 H 0.048 0.952 22 H 0.050 0.950 23 H 0.095 0.905 24 H 0.050 0.950 25 H 0.034 0.966 26 H 0.022 0.978 27 H 0.261 0.739 28 H 0.160 0.840 29 H 0.165 0.835 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.834 -4.856 13.182 14.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.061 4.061 3 N -0.187 5.187 4 C 0.086 3.914 5 C -0.554 4.554 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.529 5.529 9 Si 0.725 3.275 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.210 1.210 13 C 0.062 3.938 14 N -0.237 5.237 15 C -0.169 4.169 16 C -0.215 4.215 17 N -0.155 5.155 18 C -0.013 4.013 19 C -0.224 4.224 20 H 0.092 0.908 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.113 0.887 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.040 0.960 27 H 0.071 0.929 28 H 0.178 0.822 29 H 0.182 0.818 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.920 -4.583 12.402 13.540 hybrid contribution 0.168 -0.428 -0.049 0.462 sum 3.088 -5.011 12.352 13.683 Atomic orbital electron populations 1.22362 0.97709 1.00679 1.03363 1.22059 0.93444 0.88778 1.01792 1.59296 1.56542 1.02555 1.00339 1.19729 0.95959 0.93623 0.82039 1.21170 1.20361 1.23603 0.90253 0.91873 1.24958 0.95281 0.95224 0.98899 1.70000 1.30793 1.29661 1.22453 0.86464 0.79559 0.78877 0.82624 1.19711 1.21077 1.21038 1.21561 0.91197 0.96527 0.84539 1.70962 1.17110 1.15019 1.20595 1.22099 1.01828 1.03198 0.89774 1.22337 1.01784 1.00482 0.96913 1.45619 1.29616 1.32341 1.07896 1.21695 0.86385 0.92527 1.00698 1.22108 0.95297 1.00877 1.04151 0.90839 0.93280 0.93126 0.88692 0.93142 0.94784 0.96011 0.92917 0.82224 0.81765 0.90165 0.89320 0.91322 0.90577 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.49 9.26 37.16 0.34 -3.14 16 2 C 0.07 1.28 5.78 -3.82 -0.02 1.26 16 3 N -0.46 -10.35 4.65 -176.04 -0.82 -11.17 16 4 C 0.21 5.67 3.98 -4.98 -0.02 5.65 16 5 C -0.51 -14.40 8.43 -34.44 -0.29 -14.69 16 6 H 0.06 1.72 7.52 -52.49 -0.39 1.32 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 9 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.41 8.72 5.43 -319.62 -1.73 6.99 16 14 N -0.51 -11.51 10.13 -13.92 -0.14 -11.66 16 15 C -0.02 -0.36 11.84 -17.80 -0.21 -0.57 16 16 C -0.08 -1.29 11.59 -16.29 -0.19 -1.48 16 17 N -0.47 -7.87 2.80 -117.51 -0.33 -8.20 16 18 C 0.11 1.41 6.77 -4.04 -0.03 1.38 16 19 C -0.17 -2.06 10.24 37.16 0.38 -1.68 16 20 H 0.07 1.60 6.63 -51.93 -0.34 1.26 16 21 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.05 1.01 6.86 -51.93 -0.36 0.66 16 23 H 0.09 1.89 7.14 -51.93 -0.37 1.52 16 24 H 0.05 0.82 6.14 -51.93 -0.32 0.51 16 25 H 0.03 1.03 7.89 -51.93 -0.41 0.62 16 26 H 0.02 0.64 6.08 -51.93 -0.32 0.32 16 27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.16 2.37 8.06 -52.49 -0.42 1.95 16 29 H 0.17 1.85 8.06 -52.49 -0.42 1.42 16 30 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 31 H 0.09 1.14 6.09 -51.93 -0.32 0.82 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 279.98 15.07 4.22 4.22 Total: -1.00 -32.21 279.98 -8.14 -40.35 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -4.92 Total: 0.72 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -1.87 Total: -4.73 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.55 Total: -57.08 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.21 -8.14 -40.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050608003.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.034 kcal (2) G-P(sol) polarization free energy of solvation -32.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds