Wall clock time and date at job start Mon Mar 30 2020 02:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46905 * 109.47004 * 2 1 4 4 C 1.46897 * 110.99849 * 297.88683 * 3 2 1 5 5 C 1.50704 * 109.47295 * 290.67613 * 4 3 2 6 6 H 1.07995 * 119.99817 * 355.01110 * 5 4 3 7 7 C 1.37878 * 119.99814 * 175.00581 * 5 4 3 8 8 N 1.31511 * 120.00268 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99676 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47143 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46986 * 120.00253 * 9 7 5 12 12 H 1.48499 * 109.46949 * 240.00288 * 9 7 5 13 13 C 1.38494 * 110.99915 * 61.84435 * 3 2 1 14 14 N 1.31201 * 125.78677 * 253.86185 * 13 3 2 15 15 C 1.34390 * 109.30261 * 179.83678 * 14 13 3 16 16 C 1.34375 * 108.31757 * 0.42567 * 15 14 13 17 17 N 1.36019 * 125.79267 * 74.16531 * 13 3 2 18 18 C 1.46498 * 126.49702 * 359.97438 * 17 13 3 19 19 C 1.53008 * 109.46996 * 83.16782 * 18 17 13 20 20 H 1.08999 * 109.46675 * 67.03948 * 1 2 3 21 21 H 1.08998 * 109.47074 * 187.03710 * 1 2 3 22 22 H 1.08995 * 109.47319 * 307.04069 * 1 2 3 23 23 H 1.09001 * 109.46901 * 239.99992 * 2 1 3 24 24 H 1.08996 * 109.47203 * 119.99803 * 2 1 3 25 25 H 1.09003 * 109.46778 * 170.68039 * 4 3 2 26 26 H 1.09004 * 109.47235 * 50.67856 * 4 3 2 27 27 H 0.96998 * 119.99629 * 179.97438 * 8 7 5 28 28 H 1.07999 * 125.83890 * 180.17255 * 15 14 13 29 29 H 1.07997 * 126.52449 * 179.74711 * 16 15 14 30 30 H 1.08995 * 109.47313 * 203.16775 * 18 17 13 31 31 H 1.08995 * 109.46782 * 323.17426 * 18 17 13 32 32 H 1.08997 * 109.46692 * 180.02562 * 19 18 17 33 33 H 1.08999 * 109.47322 * 300.00572 * 19 18 17 34 34 H 1.09002 * 109.47013 * 60.00336 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5904 2.0951 -1.2122 5 6 2.3159 1.5328 -2.4074 6 1 3.0830 0.7850 -2.2707 7 6 2.0004 1.9731 -3.6753 8 7 1.0666 2.8841 -3.8416 9 14 2.8992 1.2755 -5.1568 10 1 3.8959 0.2722 -4.7039 11 1 1.9226 0.6261 -6.0677 12 1 3.5933 2.3734 -5.8767 13 6 1.6099 2.0563 1.1400 14 7 0.6723 2.9724 1.1956 15 6 0.5431 3.3994 2.4633 16 6 1.4320 2.7387 3.2241 17 7 2.1152 1.8820 2.3907 18 6 3.1835 0.9573 2.7778 19 6 4.5425 1.6026 2.4987 20 1 -0.3632 0.4009 -0.9463 21 1 -0.3633 -1.0199 0.1259 22 1 -0.3634 0.6190 0.8202 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.8214 3.1558 -1.1129 26 1 0.5161 1.9682 -1.3464 27 1 0.8449 3.1940 -4.7336 28 1 -0.1530 4.1487 2.8103 29 1 1.5818 2.8571 4.2871 30 1 3.1004 0.7306 3.8407 31 1 3.0934 0.0365 2.2017 32 1 5.3373 0.9144 2.7863 33 1 4.6256 1.8294 1.4358 34 1 4.6326 2.5235 3.0748 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050608003.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:12 Heat of formation + Delta-G solvation = 50.928618 kcal Electronic energy + Delta-G solvation = -15832.282614 eV Core-core repulsion = 13379.837546 eV Total energy + Delta-G solvation = -2452.445068 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.86304 -38.53891 -35.74580 -34.71437 -31.51904 -30.84240 -29.95540 -27.92800 -25.15348 -24.65079 -23.06022 -21.89822 -20.28855 -18.42666 -17.88160 -17.06934 -16.58839 -16.23639 -15.65040 -15.28581 -14.78568 -14.71194 -14.27919 -14.14482 -13.75028 -13.36380 -13.20198 -12.92064 -12.81404 -12.64213 -12.56013 -12.21350 -12.04711 -11.69033 -11.35490 -10.79300 -10.62393 -10.44351 -10.01653 -8.66415 -8.17311 -6.30625 1.19917 1.42295 1.43473 1.56855 1.82952 2.28525 2.42110 3.14352 3.23739 3.84346 3.98046 4.13387 4.18606 4.29231 4.37579 4.49993 4.55525 4.69087 4.73104 4.88449 4.91271 4.94287 5.16359 5.25219 5.29039 5.38491 5.43509 5.63386 5.83812 5.98368 6.06100 6.25052 6.81748 6.90038 7.34160 7.43048 8.93455 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.033053 B = 0.008305 C = 0.007800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.932961 B = 3370.657885 C = 3588.696855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.065 3.935 3 N -0.465 5.465 4 C 0.238 3.762 5 C -0.526 4.526 6 H 0.070 0.930 7 C 0.001 3.999 8 N -0.933 5.933 9 Si 0.975 3.025 10 H -0.257 1.257 11 H -0.278 1.278 12 H -0.281 1.281 13 C 0.378 3.622 14 N -0.568 5.568 15 C -0.057 4.057 16 C -0.047 4.047 17 N -0.459 5.459 18 C 0.101 3.899 19 C -0.160 4.160 20 H 0.033 0.967 21 H 0.084 0.916 22 H 0.037 0.963 23 H 0.086 0.914 24 H 0.089 0.911 25 H -0.015 1.015 26 H -0.012 1.012 27 H 0.264 0.736 28 H 0.180 0.820 29 H 0.219 0.781 30 H 0.125 0.875 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.035 0.965 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.386 -6.664 15.168 17.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.061 4.061 3 N -0.188 5.188 4 C 0.113 3.887 5 C -0.565 4.565 6 H 0.089 0.911 7 C -0.197 4.197 8 N -0.573 5.573 9 Si 0.799 3.201 10 H -0.181 1.181 11 H -0.203 1.203 12 H -0.207 1.207 13 C 0.026 3.974 14 N -0.292 5.292 15 C -0.205 4.205 16 C -0.179 4.179 17 N -0.146 5.146 18 C -0.020 4.020 19 C -0.218 4.218 20 H 0.052 0.948 21 H 0.103 0.897 22 H 0.057 0.943 23 H 0.104 0.896 24 H 0.107 0.893 25 H 0.003 0.997 26 H 0.006 0.994 27 H 0.073 0.927 28 H 0.197 0.803 29 H 0.235 0.765 30 H 0.143 0.857 31 H 0.107 0.893 32 H 0.119 0.881 33 H 0.054 0.946 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.493 -6.418 14.425 16.415 hybrid contribution -0.336 0.179 -0.505 0.633 sum 4.156 -6.240 13.920 15.810 Atomic orbital electron populations 1.22211 0.97821 1.02165 1.00609 1.22179 0.93345 0.87474 1.03140 1.59135 1.56824 1.03406 0.99414 1.19096 0.93770 0.91395 0.84470 1.21473 1.20451 1.23621 0.90915 0.91140 1.25977 0.95986 0.95343 1.02389 1.70161 1.32553 1.31218 1.23374 0.85261 0.78424 0.78319 0.78142 1.18060 1.20332 1.20722 1.21336 0.92770 0.97682 0.85624 1.70808 1.18689 1.16077 1.23620 1.22586 1.04020 1.05072 0.88786 1.23125 0.98865 0.97425 0.98530 1.45857 1.29814 1.32577 1.06365 1.22097 0.85030 0.91532 1.03313 1.22059 0.96294 1.01934 1.01518 0.94778 0.89729 0.94347 0.89581 0.89317 0.99711 0.99423 0.92733 0.80283 0.76469 0.85666 0.89300 0.88081 0.94606 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.57 9.26 71.98 0.67 -5.91 16 2 C 0.07 2.51 5.78 86.30 0.50 3.01 16 3 N -0.46 -21.36 4.65 -710.86 -3.31 -24.67 16 4 C 0.24 13.67 3.98 85.56 0.34 14.01 16 5 C -0.53 -30.42 8.43 25.60 0.22 -30.20 16 6 H 0.07 3.88 7.52 -2.91 -0.02 3.86 16 7 C 0.00 0.08 5.46 84.66 0.46 0.54 16 8 N -0.93 -58.50 13.29 21.45 0.28 -58.21 16 9 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 10 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 C 0.38 16.15 5.43 260.37 1.41 17.57 16 14 N -0.57 -26.39 10.13 -197.95 -2.01 -28.39 16 15 C -0.06 -2.02 11.84 83.42 0.99 -1.04 16 16 C -0.05 -1.31 11.59 82.89 0.96 -0.35 16 17 N -0.46 -14.47 2.80 -525.68 -1.47 -15.94 16 18 C 0.10 2.21 6.77 86.38 0.59 2.80 16 19 C -0.16 -3.53 10.24 71.98 0.74 -2.80 16 20 H 0.03 1.56 6.63 -2.39 -0.02 1.54 16 21 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 22 H 0.04 1.56 6.86 -2.39 -0.02 1.55 16 23 H 0.09 3.42 7.14 -2.39 -0.02 3.40 16 24 H 0.09 2.71 6.14 -2.39 -0.01 2.69 16 25 H -0.02 -1.01 7.89 -2.39 -0.02 -1.03 16 26 H -0.01 -0.76 6.08 -2.39 -0.01 -0.78 16 27 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 28 H 0.18 5.23 8.06 -2.91 -0.02 5.21 16 29 H 0.22 3.58 8.06 -2.91 -0.02 3.56 16 30 H 0.13 1.70 8.13 -2.39 -0.02 1.68 16 31 H 0.09 1.96 6.09 -2.39 -0.01 1.95 16 32 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -75.58 279.98 3.47 -72.12 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 1.07 Total: 10.73 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 6.87 Total: -2.37 kcal Atomic # 7 Polarization: -120.71 SS G_CDS: -6.50 Total: -127.21 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -75.58 3.47 -72.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050608003.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.045 kcal (2) G-P(sol) polarization free energy of solvation -75.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds