Wall clock time and date at job start Mon Mar 30 2020 02:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 111.00095 * 2 1 4 4 C 1.52997 * 109.47114 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47127 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47184 * 180.02562 * 5 4 3 7 7 C 1.39867 * 126.04328 * 90.01912 * 6 5 4 8 8 N 1.30844 * 108.20399 * 179.97438 * 7 6 5 9 9 N 1.40084 * 108.20407 * 0.02562 * 8 7 6 10 10 C 1.46495 * 126.03861 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.47124 * 304.97670 * 10 9 8 12 12 H 1.08002 * 120.00093 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99872 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00075 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99724 * 179.97438 * 13 11 10 16 16 H 1.48510 * 109.46908 * 90.00199 * 15 13 11 17 17 H 1.48495 * 109.47301 * 210.00306 * 15 13 11 18 18 H 1.48501 * 109.47284 * 330.00542 * 15 13 11 19 19 C 1.34952 * 107.92438 * 359.75972 * 9 8 7 20 20 H 1.09001 * 109.46635 * 299.99242 * 1 2 3 21 21 H 1.08996 * 109.47212 * 59.99391 * 1 2 3 22 22 H 1.08997 * 109.46649 * 180.02562 * 1 2 3 23 23 H 1.00907 * 110.99561 * 236.04948 * 2 1 3 24 24 H 1.08996 * 109.47194 * 60.00616 * 3 2 1 25 25 H 1.09001 * 109.47271 * 300.00180 * 3 2 1 26 26 H 1.09001 * 109.47502 * 60.00479 * 4 3 2 27 27 H 1.09001 * 109.47289 * 300.00275 * 4 3 2 28 28 H 1.09001 * 109.47002 * 299.99574 * 5 4 3 29 29 H 1.08993 * 109.46955 * 60.00011 * 5 4 3 30 30 H 1.08000 * 125.89821 * 359.96271 * 7 6 5 31 31 H 1.08999 * 109.47202 * 64.97447 * 10 9 8 32 32 H 1.09002 * 109.47472 * 184.97279 * 10 9 8 33 33 H 0.97000 * 119.99697 * 179.97438 * 14 13 11 34 34 H 1.08002 * 126.12753 * 180.24058 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3305 -0.0006 5 6 4.0733 2.7590 0.0000 6 6 5.5797 2.7187 -0.0013 7 6 6.4015 2.6980 -1.1329 8 7 7.6469 2.6649 -0.7331 9 7 7.6569 2.6629 0.6677 10 6 8.8473 2.6312 1.5210 11 6 9.6998 1.4451 1.1501 12 1 9.3864 0.7815 0.3577 13 6 10.8803 1.2077 1.8217 14 7 11.2621 2.0160 2.7863 15 14 11.9366 -0.2629 1.3625 16 1 12.9050 0.1331 0.3084 17 1 12.6752 -0.7355 2.5609 18 1 11.0695 -1.3554 0.8527 19 6 6.3765 2.7013 1.0923 20 1 -0.3632 0.5137 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3632 -1.0277 0.0005 23 1 1.8306 -0.5261 -0.7815 24 1 1.6461 1.8947 0.8900 25 1 1.6460 1.8948 -0.8900 26 1 3.8741 0.8074 -0.8909 27 1 3.8748 0.8070 0.8891 28 1 3.7235 3.2828 -0.8896 29 1 3.7242 3.2817 0.8904 30 1 6.0660 2.7075 -2.1594 31 1 9.4196 3.5481 1.3805 32 1 8.5441 2.5486 2.5647 33 1 12.0925 1.8487 3.2590 34 1 6.0468 2.7137 2.1206 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054680016.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:17 Heat of formation + Delta-G solvation = 57.378224 kcal Electronic energy + Delta-G solvation = -14471.666560 eV Core-core repulsion = 12019.501168 eV Total energy + Delta-G solvation = -2452.165392 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.33194 -36.79657 -34.04663 -33.11033 -31.30432 -29.36831 -27.48593 -25.67471 -23.60043 -22.90857 -21.39497 -20.02772 -19.31935 -16.51220 -16.26937 -15.83516 -14.89057 -14.57856 -14.45343 -14.09924 -13.72577 -13.29956 -12.72783 -12.48913 -12.32547 -12.04488 -11.83920 -11.64410 -11.34878 -11.10069 -10.90222 -10.76237 -10.52681 -10.21825 -9.83095 -9.52092 -8.66834 -8.61622 -8.44868 -7.52271 -6.23648 -4.28453 2.83418 3.25280 3.30800 3.35973 3.48051 3.68820 4.14829 4.33135 4.96129 5.09654 5.11738 5.20720 5.30753 5.44884 5.51164 5.56800 5.65627 5.73436 5.86642 5.91049 6.19822 6.21989 6.40309 6.50711 6.81116 6.86040 6.95289 7.07525 7.19465 7.47413 7.71676 7.89299 8.07408 8.65889 8.81884 9.37297 10.85460 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.037197 B = 0.004819 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.565252 B = 5808.834896 C = 6146.140453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.698 5.698 3 C 0.057 3.943 4 C -0.112 4.112 5 C -0.027 4.027 6 C -0.265 4.265 7 C 0.018 3.982 8 N -0.284 5.284 9 N -0.327 5.327 10 C 0.256 3.744 11 C -0.528 4.528 12 H 0.069 0.931 13 C 0.062 3.938 14 N -0.896 5.896 15 Si 0.909 3.091 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.272 1.272 19 C 0.050 3.950 20 H 0.063 0.937 21 H 0.019 0.981 22 H 0.065 0.935 23 H 0.341 0.659 24 H 0.070 0.930 25 H 0.027 0.973 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.166 0.834 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.267 0.733 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.011 -0.406 -4.132 17.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.329 5.329 3 C -0.072 4.072 4 C -0.151 4.151 5 C -0.066 4.066 6 C -0.278 4.278 7 C -0.167 4.167 8 N -0.108 5.108 9 N -0.107 5.107 10 C 0.138 3.862 11 C -0.566 4.566 12 H 0.087 0.913 13 C -0.141 4.141 14 N -0.534 5.534 15 Si 0.736 3.264 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.101 4.101 20 H 0.082 0.918 21 H 0.038 0.962 22 H 0.084 0.916 23 H 0.159 0.841 24 H 0.088 0.912 25 H 0.045 0.955 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.183 0.817 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -15.424 -0.479 -3.564 15.838 hybrid contribution -0.402 -0.462 -0.755 0.972 sum -15.826 -0.940 -4.318 16.432 Atomic orbital electron populations 1.22183 0.88171 1.01653 1.00230 1.60401 1.07423 1.14910 1.50124 1.22083 0.95995 0.88913 1.00240 1.21609 0.92718 0.97790 1.02944 1.19642 0.90239 0.95441 1.01281 1.19782 0.95539 1.20259 0.92211 1.23539 0.90715 1.03514 0.98912 1.77361 1.20247 1.22424 0.90727 1.49405 1.06473 1.50559 1.04297 1.19705 0.79471 0.99232 0.87798 1.21254 1.05576 1.10221 1.19592 0.91312 1.24951 0.97297 0.97216 0.94636 1.69920 1.23468 1.37465 1.22575 0.86316 0.80084 0.82059 0.77984 1.20303 1.20966 1.19674 1.22270 0.85349 1.03020 0.99420 0.91812 0.96249 0.91625 0.84121 0.91155 0.95477 0.92179 0.91126 0.92192 0.92148 0.81661 0.93820 0.92865 0.92331 0.82148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.70 60.07 0.64 0.87 16 2 N -0.70 -7.19 6.86 -121.14 -0.83 -8.02 16 3 C 0.06 0.59 5.69 -3.83 -0.02 0.56 16 4 C -0.11 -1.36 5.46 -26.73 -0.15 -1.51 16 5 C -0.03 -0.34 5.70 -27.88 -0.16 -0.50 16 6 C -0.27 -4.56 5.35 -105.05 -0.56 -5.12 16 7 C 0.02 0.33 11.96 -17.36 -0.21 0.12 16 8 N -0.28 -6.60 12.41 30.63 0.38 -6.22 16 9 N -0.33 -7.63 3.67 -62.55 -0.23 -7.86 16 10 C 0.26 6.61 6.26 -5.20 -0.03 6.58 16 11 C -0.53 -14.95 9.24 -34.44 -0.32 -15.27 16 12 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 14 N -0.90 -25.67 13.29 55.43 0.74 -24.93 16 15 Si 0.91 21.63 29.54 -169.99 -5.02 16.61 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 C 0.05 0.95 11.36 -17.22 -0.20 0.76 16 20 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 21 H 0.02 0.15 8.14 -51.93 -0.42 -0.28 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.34 3.20 8.82 -39.29 -0.35 2.86 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.17 2.50 8.06 -52.49 -0.42 2.08 16 31 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 1.35 8.07 -51.93 -0.42 0.93 16 33 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 34 H 0.16 2.61 8.06 -52.49 -0.42 2.19 16 LS Contribution 294.80 15.07 4.44 4.44 Total: -1.00 -30.50 294.80 -7.00 -37.50 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -5.38 Total: 0.37 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -1.10 Total: -11.88 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.06 Total: -47.04 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.50 -7.00 -37.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054680016.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.878 kcal (2) G-P(sol) polarization free energy of solvation -30.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds