Wall clock time and date at job start Mon Mar 30 2020 02:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 111.00095 * 2 1 4 4 C 1.52997 * 109.47114 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47127 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47184 * 180.02562 * 5 4 3 7 7 C 1.39867 * 126.04328 * 90.01912 * 6 5 4 8 8 N 1.30844 * 108.20399 * 179.97438 * 7 6 5 9 9 N 1.40084 * 108.20407 * 0.02562 * 8 7 6 10 10 C 1.46495 * 126.03861 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.47124 * 304.97670 * 10 9 8 12 12 H 1.08002 * 120.00093 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99872 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00075 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99724 * 179.97438 * 13 11 10 16 16 H 1.48510 * 109.46908 * 90.00199 * 15 13 11 17 17 H 1.48495 * 109.47301 * 210.00306 * 15 13 11 18 18 H 1.48501 * 109.47284 * 330.00542 * 15 13 11 19 19 C 1.34952 * 107.92438 * 359.75972 * 9 8 7 20 20 H 1.09001 * 109.46635 * 299.99242 * 1 2 3 21 21 H 1.08996 * 109.47212 * 59.99391 * 1 2 3 22 22 H 1.08997 * 109.46649 * 180.02562 * 1 2 3 23 23 H 1.00907 * 110.99561 * 236.04948 * 2 1 3 24 24 H 1.08996 * 109.47194 * 60.00616 * 3 2 1 25 25 H 1.09001 * 109.47271 * 300.00180 * 3 2 1 26 26 H 1.09001 * 109.47502 * 60.00479 * 4 3 2 27 27 H 1.09001 * 109.47289 * 300.00275 * 4 3 2 28 28 H 1.09001 * 109.47002 * 299.99574 * 5 4 3 29 29 H 1.08993 * 109.46955 * 60.00011 * 5 4 3 30 30 H 1.08000 * 125.89821 * 359.96271 * 7 6 5 31 31 H 1.08999 * 109.47202 * 64.97447 * 10 9 8 32 32 H 1.09002 * 109.47472 * 184.97279 * 10 9 8 33 33 H 0.97000 * 119.99697 * 179.97438 * 14 13 11 34 34 H 1.08002 * 126.12753 * 180.24058 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3305 -0.0006 5 6 4.0733 2.7590 0.0000 6 6 5.5797 2.7187 -0.0013 7 6 6.4015 2.6980 -1.1329 8 7 7.6469 2.6649 -0.7331 9 7 7.6569 2.6629 0.6677 10 6 8.8473 2.6312 1.5210 11 6 9.6998 1.4451 1.1501 12 1 9.3864 0.7815 0.3577 13 6 10.8803 1.2077 1.8217 14 7 11.2621 2.0160 2.7863 15 14 11.9366 -0.2629 1.3625 16 1 12.9050 0.1331 0.3084 17 1 12.6752 -0.7355 2.5609 18 1 11.0695 -1.3554 0.8527 19 6 6.3765 2.7013 1.0923 20 1 -0.3632 0.5137 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3632 -1.0277 0.0005 23 1 1.8306 -0.5261 -0.7815 24 1 1.6461 1.8947 0.8900 25 1 1.6460 1.8948 -0.8900 26 1 3.8741 0.8074 -0.8909 27 1 3.8748 0.8070 0.8891 28 1 3.7235 3.2828 -0.8896 29 1 3.7242 3.2817 0.8904 30 1 6.0660 2.7075 -2.1594 31 1 9.4196 3.5481 1.3805 32 1 8.5441 2.5486 2.5647 33 1 12.0925 1.8487 3.2590 34 1 6.0468 2.7137 2.1206 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054680016.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:17 Heat of formation + Delta-G solvation = 36.877246 kcal Electronic energy + Delta-G solvation = -14472.555549 eV Core-core repulsion = 12019.501168 eV Total energy + Delta-G solvation = -2453.054381 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.89488 -37.63862 -35.78913 -34.52843 -33.05215 -30.70502 -29.17729 -26.85917 -25.20074 -24.12196 -22.34848 -21.69303 -20.77703 -18.63422 -17.64290 -16.92814 -16.40612 -15.88958 -15.69472 -15.33996 -14.97749 -14.55286 -14.21515 -14.04504 -13.71815 -13.51878 -12.99197 -12.84318 -12.75194 -12.67601 -12.30552 -12.29669 -12.00406 -11.72479 -11.53402 -11.09667 -10.76061 -10.18591 -9.34354 -9.07169 -8.35741 -6.50181 1.25020 1.36587 1.38067 1.49371 1.99942 2.05464 2.34143 2.95928 3.39917 3.94324 4.13641 4.21921 4.24020 4.53990 4.55666 4.61660 4.68828 4.71473 4.87546 4.91803 4.93160 5.05817 5.10382 5.15244 5.23709 5.51677 5.54679 5.58238 5.80110 6.00967 6.13213 6.34858 6.48725 6.63768 7.10417 7.20329 8.72415 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.037197 B = 0.004819 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.565252 B = 5808.834896 C = 6146.140453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.716 5.716 3 C 0.064 3.936 4 C -0.104 4.104 5 C -0.021 4.021 6 C -0.249 4.249 7 C 0.025 3.975 8 N -0.340 5.340 9 N -0.358 5.358 10 C 0.271 3.729 11 C -0.549 4.549 12 H 0.051 0.949 13 C 0.017 3.983 14 N -0.922 5.922 15 Si 0.974 3.026 16 H -0.272 1.272 17 H -0.270 1.270 18 H -0.272 1.272 19 C 0.035 3.965 20 H 0.063 0.937 21 H 0.028 0.972 22 H 0.073 0.927 23 H 0.345 0.655 24 H 0.073 0.927 25 H 0.040 0.960 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.203 0.797 31 H 0.016 0.984 32 H 0.051 0.949 33 H 0.273 0.727 34 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.656 -0.935 -4.770 19.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.347 5.347 3 C -0.065 4.065 4 C -0.143 4.143 5 C -0.060 4.060 6 C -0.261 4.261 7 C -0.159 4.159 8 N -0.163 5.163 9 N -0.139 5.139 10 C 0.151 3.849 11 C -0.587 4.587 12 H 0.069 0.931 13 C -0.183 4.183 14 N -0.560 5.560 15 Si 0.797 3.203 16 H -0.198 1.198 17 H -0.195 1.195 18 H -0.196 1.196 19 C -0.112 4.112 20 H 0.082 0.918 21 H 0.046 0.954 22 H 0.092 0.908 23 H 0.162 0.838 24 H 0.091 0.909 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.219 0.781 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -17.102 -0.999 -4.200 17.639 hybrid contribution -0.014 -0.269 -0.603 0.660 sum -17.116 -1.268 -4.802 17.822 Atomic orbital electron populations 1.22216 0.86944 1.02389 1.00644 1.60400 1.08719 1.14963 1.50616 1.21974 0.94357 0.89248 1.00962 1.21480 0.94213 0.96899 1.01685 1.19728 0.86827 0.96303 1.03156 1.20265 0.97654 1.17435 0.90728 1.24249 0.89691 1.00999 1.01009 1.77286 1.22987 1.25030 0.90960 1.49136 1.06826 1.53511 1.04383 1.19219 0.80365 0.97123 0.88166 1.21408 1.06777 1.10982 1.19549 0.93073 1.25785 0.98269 0.99917 0.94366 1.69998 1.24053 1.38832 1.23157 0.85321 0.78268 0.78499 0.78176 1.19758 1.19453 1.19645 1.22886 0.84220 1.02730 1.01410 0.91771 0.95376 0.90830 0.83755 0.90902 0.94199 0.92693 0.93183 0.89949 0.90658 0.78065 0.96582 0.93120 0.91782 0.79860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.70 127.69 1.37 1.76 16 2 N -0.72 -13.20 6.86 -537.16 -3.68 -16.89 16 3 C 0.06 1.14 5.69 86.30 0.49 1.63 16 4 C -0.10 -2.29 5.46 30.60 0.17 -2.12 16 5 C -0.02 -0.47 5.70 29.85 0.17 -0.30 16 6 C -0.25 -8.09 5.35 -20.14 -0.11 -8.20 16 7 C 0.03 0.91 11.96 85.23 1.02 1.93 16 8 N -0.34 -15.95 12.41 -57.02 -0.71 -16.66 16 9 N -0.36 -17.05 3.67 -351.80 -1.29 -18.34 16 10 C 0.27 14.56 6.26 85.63 0.54 15.10 16 11 C -0.55 -31.99 9.24 25.60 0.24 -31.76 16 12 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 13 C 0.02 0.96 5.46 84.66 0.46 1.42 16 14 N -0.92 -53.45 13.29 21.45 0.28 -53.17 16 15 Si 0.97 44.53 29.54 68.60 2.03 46.56 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 19 C 0.04 1.34 11.36 83.54 0.95 2.29 16 20 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 21 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 22 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.34 5.81 8.82 -89.69 -0.79 5.02 16 24 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 25 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.20 5.53 8.06 -2.91 -0.02 5.50 16 31 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 2.69 8.07 -2.39 -0.02 2.67 16 33 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 34 H 0.18 5.83 8.06 -2.91 -0.02 5.81 16 Total: -1.00 -66.49 294.80 2.20 -64.30 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.28 Total: 12.46 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: 5.29 Total: -18.26 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -5.40 Total: -105.05 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -66.49 2.20 -64.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054680016.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.173 kcal (2) G-P(sol) polarization free energy of solvation -66.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds