Wall clock time and date at job start Mon Mar 30 2020 02:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47228 * 2 1 4 4 N 1.46897 * 109.46821 * 240.00391 * 2 1 3 5 5 C 1.53000 * 109.47002 * 120.00274 * 2 1 3 6 6 C 1.50703 * 109.46543 * 184.99927 * 5 2 1 7 7 N 1.30504 * 125.64833 * 269.95749 * 6 5 2 8 8 C 1.34128 * 109.25674 * 180.02562 * 7 6 5 9 9 C 1.34672 * 108.01990 * 359.72856 * 8 7 6 10 10 N 1.35043 * 125.65117 * 90.00299 * 6 5 2 11 11 C 1.46496 * 126.39465 * 359.96252 * 10 6 5 12 12 C 1.52998 * 109.47238 * 85.00098 * 11 10 6 13 13 C 1.50706 * 109.47348 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99302 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00436 * 179.72505 * 13 12 11 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47154 * 89.99418 * 17 15 13 19 19 H 1.48493 * 109.47010 * 209.99942 * 17 15 13 20 20 H 1.48502 * 109.46736 * 329.99638 * 17 15 13 21 21 H 1.09005 * 109.47197 * 299.99402 * 1 2 3 22 22 H 1.09000 * 109.47321 * 59.99292 * 1 2 3 23 23 H 1.09002 * 109.47228 * 180.02562 * 1 2 3 24 24 H 1.00904 * 111.00153 * 296.04436 * 4 2 1 25 25 H 1.00901 * 111.00056 * 59.99928 * 4 2 1 26 26 H 1.08999 * 109.46787 * 65.00280 * 5 2 1 27 27 H 1.08992 * 109.47424 * 304.99534 * 5 2 1 28 28 H 1.07996 * 125.99106 * 180.02562 * 8 7 6 29 29 H 1.07997 * 126.59776 * 180.28718 * 9 8 7 30 30 H 1.09000 * 109.47435 * 325.00002 * 11 10 6 31 31 H 1.09002 * 109.46784 * 204.99637 * 11 10 6 32 32 H 1.09001 * 109.47671 * 59.99927 * 12 11 10 33 33 H 1.08998 * 109.47454 * 299.99925 * 12 11 10 34 34 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0400 -0.7213 1.2492 6 6 3.5419 -0.6149 1.3126 7 7 4.3871 -1.4611 0.7903 8 6 5.6384 -1.0494 1.0427 9 6 5.5659 0.0986 1.7431 10 7 4.2362 0.3713 1.9200 11 6 3.6716 1.5219 2.6296 12 6 3.3601 1.1271 4.0746 13 6 2.7799 2.3109 4.8049 14 1 2.6471 3.2508 4.2899 15 6 2.4139 2.1925 6.1289 16 7 2.5707 1.0463 6.7544 17 14 1.6941 3.6595 7.0338 18 1 0.2168 3.6580 6.8830 19 1 2.0448 3.5733 8.4742 20 1 2.2487 4.9136 6.4636 21 1 -0.3634 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.7502 -1.6648 -1.1910 25 1 1.6960 -0.2348 -2.0385 26 1 1.7516 -1.7716 1.2054 27 1 1.6055 -0.2619 2.1369 28 1 6.5451 -1.5482 0.7339 29 1 6.3970 0.6892 2.0991 30 1 2.7544 1.8401 2.1342 31 1 4.3908 2.3409 2.6238 32 1 4.2773 0.8089 4.5702 33 1 2.6410 0.3080 4.0806 34 1 2.3129 0.9627 7.6858 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062802803.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:52 Heat of formation + Delta-G solvation = 38.355241 kcal Electronic energy + Delta-G solvation = -15292.274286 eV Core-core repulsion = 12839.283996 eV Total energy + Delta-G solvation = -2452.990290 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.40747 -36.51564 -34.58404 -32.56611 -30.50181 -29.33058 -28.59455 -26.16460 -24.91534 -21.74369 -20.84292 -20.64231 -18.96539 -16.84211 -16.03668 -15.86023 -14.90586 -14.56413 -14.35941 -13.83110 -13.57855 -13.05776 -12.97133 -12.72679 -12.35622 -12.16375 -11.70836 -11.53965 -11.32917 -11.08987 -10.88958 -10.78087 -10.27048 -10.06310 -9.45665 -9.22206 -8.68145 -8.53575 -8.49971 -7.68503 -6.17309 -4.23417 2.76285 3.21609 3.28552 3.30837 3.58169 3.79729 4.32585 4.66517 4.83794 5.07861 5.18701 5.33371 5.38101 5.49077 5.58365 5.71598 5.82240 5.93179 6.04977 6.08182 6.14465 6.24231 6.40205 6.46136 7.00827 7.29608 7.36511 7.43732 7.52376 7.60376 7.74572 7.93335 8.15530 8.80582 8.82744 9.42311 10.93606 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.027274 B = 0.007493 C = 0.006324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.390544 B = 3735.997257 C = 4426.631682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.095 3.905 3 H 0.077 0.923 4 N -0.832 5.832 5 C -0.030 4.030 6 C 0.220 3.780 7 N -0.487 5.487 8 C -0.045 4.045 9 C -0.061 4.061 10 N -0.442 5.442 11 C 0.103 3.897 12 C 0.015 3.985 13 C -0.530 4.530 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.888 5.888 17 Si 0.897 3.103 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 H 0.066 0.934 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.340 0.660 25 H 0.333 0.667 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.159 0.841 29 H 0.164 0.836 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.656 -1.012 -11.368 11.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.018 4.018 3 H 0.095 0.905 4 N -0.361 5.361 5 C -0.070 4.070 6 C -0.042 4.042 7 N -0.205 5.205 8 C -0.194 4.194 9 C -0.196 4.196 10 N -0.122 5.122 11 C -0.018 4.018 12 C -0.023 4.023 13 C -0.569 4.569 14 H 0.077 0.923 15 C -0.141 4.141 16 N -0.526 5.526 17 Si 0.724 3.276 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.197 1.197 21 H 0.085 0.915 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.153 0.847 25 H 0.145 0.855 26 H 0.105 0.895 27 H 0.108 0.892 28 H 0.176 0.824 29 H 0.181 0.819 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.041 0.959 33 H 0.042 0.958 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.211 -1.483 -11.265 11.427 hybrid contribution -1.027 1.407 0.960 1.989 sum -2.238 -0.076 -10.306 10.546 Atomic orbital electron populations 1.22653 0.97476 1.02080 1.02488 1.21362 0.91680 0.98356 0.90422 0.90501 1.58777 1.67506 1.06472 1.03308 1.20055 0.86496 1.02326 0.98087 1.22663 0.95348 0.87924 0.98295 1.70113 0.99825 1.27886 1.22698 1.22076 0.95730 0.96604 1.05018 1.22578 0.86388 1.02146 1.08448 1.45719 1.06131 1.20806 1.39546 1.22317 0.98359 0.85285 0.95887 1.19417 0.97766 0.97674 0.87429 1.21007 1.42771 0.96998 0.96099 0.92282 1.25000 0.95496 0.96021 0.97548 1.69972 1.47085 1.24249 1.11325 0.86522 0.79417 0.82650 0.79025 1.20479 1.21050 1.19739 0.91524 0.92753 0.92545 0.84675 0.85486 0.89537 0.89156 0.82404 0.81895 0.90469 0.90335 0.95881 0.95823 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.03 9.48 37.16 0.35 -1.68 16 2 C 0.09 1.25 3.35 -67.71 -0.23 1.02 16 3 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 4 N -0.83 -10.42 8.97 -4.67 -0.04 -10.47 16 5 C -0.03 -0.48 4.98 -27.88 -0.14 -0.62 16 6 C 0.22 4.20 6.88 -155.41 -1.07 3.13 16 7 N -0.49 -9.60 11.25 -10.81 -0.12 -9.73 16 8 C -0.05 -0.82 11.87 -17.81 -0.21 -1.03 16 9 C -0.06 -1.10 11.58 -16.56 -0.19 -1.29 16 10 N -0.44 -8.57 2.75 -113.90 -0.31 -8.88 16 11 C 0.10 2.04 5.62 -4.04 -0.02 2.01 16 12 C 0.01 0.36 5.30 -27.88 -0.15 0.22 16 13 C -0.53 -14.08 9.11 -34.44 -0.31 -14.40 16 14 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 17 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.34 3.97 8.98 -39.29 -0.35 3.62 16 25 H 0.33 3.46 9.04 -39.29 -0.36 3.10 16 26 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.09 1.52 7.36 -51.93 -0.38 1.13 16 28 H 0.16 2.38 8.06 -52.49 -0.42 1.96 16 29 H 0.16 2.51 8.06 -52.49 -0.42 2.09 16 30 H 0.08 1.43 7.92 -51.93 -0.41 1.02 16 31 H 0.08 1.48 8.13 -51.93 -0.42 1.05 16 32 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.02 0.62 7.67 -51.93 -0.40 0.23 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 290.87 15.07 4.38 4.38 Total: -1.00 -30.78 290.87 -7.69 -38.47 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -5.25 Total: 6.69 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -2.07 Total: -11.03 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 0.26 Total: -54.18 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.78 -7.69 -38.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062802803.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.826 kcal (2) G-P(sol) polarization free energy of solvation -30.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds