Wall clock time and date at job start Mon Mar 30 2020 02:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47228 * 2 1 4 4 N 1.46897 * 109.46821 * 240.00391 * 2 1 3 5 5 C 1.53000 * 109.47002 * 120.00274 * 2 1 3 6 6 C 1.50703 * 109.46543 * 184.99927 * 5 2 1 7 7 N 1.30504 * 125.64833 * 269.95749 * 6 5 2 8 8 C 1.34128 * 109.25674 * 180.02562 * 7 6 5 9 9 C 1.34672 * 108.01990 * 359.72856 * 8 7 6 10 10 N 1.35043 * 125.65117 * 90.00299 * 6 5 2 11 11 C 1.46496 * 126.39465 * 359.96252 * 10 6 5 12 12 C 1.52998 * 109.47238 * 85.00098 * 11 10 6 13 13 C 1.50706 * 109.47348 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99302 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00436 * 179.72505 * 13 12 11 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47154 * 89.99418 * 17 15 13 19 19 H 1.48493 * 109.47010 * 209.99942 * 17 15 13 20 20 H 1.48502 * 109.46736 * 329.99638 * 17 15 13 21 21 H 1.09005 * 109.47197 * 299.99402 * 1 2 3 22 22 H 1.09000 * 109.47321 * 59.99292 * 1 2 3 23 23 H 1.09002 * 109.47228 * 180.02562 * 1 2 3 24 24 H 1.00904 * 111.00153 * 296.04436 * 4 2 1 25 25 H 1.00901 * 111.00056 * 59.99928 * 4 2 1 26 26 H 1.08999 * 109.46787 * 65.00280 * 5 2 1 27 27 H 1.08992 * 109.47424 * 304.99534 * 5 2 1 28 28 H 1.07996 * 125.99106 * 180.02562 * 8 7 6 29 29 H 1.07997 * 126.59776 * 180.28718 * 9 8 7 30 30 H 1.09000 * 109.47435 * 325.00002 * 11 10 6 31 31 H 1.09002 * 109.46784 * 204.99637 * 11 10 6 32 32 H 1.09001 * 109.47671 * 59.99927 * 12 11 10 33 33 H 1.08998 * 109.47454 * 299.99925 * 12 11 10 34 34 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0400 -0.7213 1.2492 6 6 3.5419 -0.6149 1.3126 7 7 4.3871 -1.4611 0.7903 8 6 5.6384 -1.0494 1.0427 9 6 5.5659 0.0986 1.7431 10 7 4.2362 0.3713 1.9200 11 6 3.6716 1.5219 2.6296 12 6 3.3601 1.1271 4.0746 13 6 2.7799 2.3109 4.8049 14 1 2.6471 3.2508 4.2899 15 6 2.4139 2.1925 6.1289 16 7 2.5707 1.0463 6.7544 17 14 1.6941 3.6595 7.0338 18 1 0.2168 3.6580 6.8830 19 1 2.0448 3.5733 8.4742 20 1 2.2487 4.9136 6.4636 21 1 -0.3634 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.7502 -1.6648 -1.1910 25 1 1.6960 -0.2348 -2.0385 26 1 1.7516 -1.7716 1.2054 27 1 1.6055 -0.2619 2.1369 28 1 6.5451 -1.5482 0.7339 29 1 6.3970 0.6892 2.0991 30 1 2.7544 1.8401 2.1342 31 1 4.3908 2.3409 2.6238 32 1 4.2773 0.8089 4.5702 33 1 2.6410 0.3080 4.0806 34 1 2.3129 0.9627 7.6858 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062802803.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:51 Heat of formation + Delta-G solvation = 18.349731 kcal Electronic energy + Delta-G solvation = -15293.141790 eV Core-core repulsion = 12839.283996 eV Total energy + Delta-G solvation = -2453.857794 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.85929 -37.58732 -36.36684 -34.46117 -31.78434 -31.14352 -29.62259 -27.48290 -26.73921 -23.55433 -22.11225 -21.97135 -20.41976 -18.72989 -17.53445 -17.07849 -16.68042 -16.00458 -15.81581 -15.17303 -14.83130 -14.54688 -14.47068 -14.06768 -13.88446 -13.43056 -13.29245 -12.90376 -12.81396 -12.62905 -12.49957 -12.13070 -11.96022 -11.85605 -11.44931 -10.75500 -10.62209 -10.27310 -9.46776 -9.10490 -8.26155 -6.39878 1.30826 1.41611 1.42228 1.53398 2.09133 2.36563 2.40606 3.08671 3.56289 3.67073 3.95999 4.02677 4.11085 4.27447 4.39773 4.43377 4.56184 4.65087 4.67914 4.83839 4.91594 4.94129 5.14275 5.26808 5.32393 5.35700 5.67224 5.69574 6.01171 6.06008 6.34885 6.46531 6.73807 6.76519 7.31226 7.35469 8.85856 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.027274 B = 0.007493 C = 0.006324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.390544 B = 3735.997257 C = 4426.631682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.104 3.896 3 H 0.065 0.935 4 N -0.841 5.841 5 C -0.030 4.030 6 C 0.209 3.791 7 N -0.507 5.507 8 C -0.054 4.054 9 C -0.072 4.072 10 N -0.453 5.453 11 C 0.119 3.881 12 C 0.026 3.974 13 C -0.543 4.543 14 H 0.073 0.927 15 C 0.004 3.996 16 N -0.932 5.932 17 Si 0.968 3.032 18 H -0.271 1.271 19 H -0.286 1.286 20 H -0.259 1.259 21 H 0.059 0.941 22 H 0.071 0.929 23 H 0.064 0.936 24 H 0.345 0.655 25 H 0.347 0.653 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.186 0.814 29 H 0.187 0.813 30 H 0.091 0.909 31 H 0.093 0.907 32 H -0.011 1.011 33 H -0.005 1.005 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.116 0.209 -12.285 12.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.009 4.009 3 H 0.083 0.917 4 N -0.372 5.372 5 C -0.070 4.070 6 C -0.053 4.053 7 N -0.226 5.226 8 C -0.202 4.202 9 C -0.206 4.206 10 N -0.134 5.134 11 C -0.002 4.002 12 C -0.012 4.012 13 C -0.581 4.581 14 H 0.091 0.909 15 C -0.194 4.194 16 N -0.571 5.571 17 Si 0.793 3.207 18 H -0.196 1.196 19 H -0.212 1.212 20 H -0.183 1.183 21 H 0.078 0.922 22 H 0.090 0.910 23 H 0.083 0.917 24 H 0.159 0.841 25 H 0.160 0.840 26 H 0.110 0.890 27 H 0.094 0.906 28 H 0.203 0.797 29 H 0.204 0.796 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.007 0.993 33 H 0.014 0.986 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.663 -0.261 -12.216 12.331 hybrid contribution -0.830 0.949 1.217 1.752 sum -2.492 0.688 -10.999 11.299 Atomic orbital electron populations 1.22562 0.95437 1.02859 1.02995 1.21188 0.93106 0.97137 0.89447 0.91724 1.58714 1.67977 1.06947 1.03612 1.20149 0.84907 1.02933 0.98988 1.23245 0.96551 0.87640 0.97882 1.70128 1.00646 1.28306 1.23526 1.22610 0.96219 0.96713 1.04677 1.23088 0.86543 1.02620 1.08359 1.45762 1.06805 1.20939 1.39938 1.22009 0.99556 0.85702 0.92959 1.19196 0.95183 0.96418 0.90372 1.21462 1.42187 0.97901 0.96551 0.90856 1.25971 0.95889 0.98885 0.98683 1.70118 1.48555 1.26719 1.11713 0.85391 0.78814 0.79231 0.77308 1.19604 1.21175 1.18278 0.92223 0.90983 0.91663 0.84115 0.83984 0.89033 0.90619 0.79733 0.79570 0.89041 0.88882 0.99306 0.98629 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.58 9.48 71.98 0.68 -2.89 16 2 C 0.10 2.64 3.35 44.92 0.15 2.79 16 3 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 4 N -0.84 -19.86 8.97 -168.68 -1.51 -21.37 16 5 C -0.03 -0.96 4.98 29.85 0.15 -0.81 16 6 C 0.21 7.93 6.88 138.13 0.95 8.88 16 7 N -0.51 -19.71 11.25 -188.13 -2.12 -21.82 16 8 C -0.05 -1.90 11.87 83.52 0.99 -0.91 16 9 C -0.07 -2.56 11.58 83.09 0.96 -1.59 16 10 N -0.45 -17.41 2.75 -514.28 -1.41 -18.83 16 11 C 0.12 4.67 5.62 86.38 0.49 5.16 16 12 C 0.03 1.31 5.30 29.85 0.16 1.47 16 13 C -0.54 -28.73 9.11 25.60 0.23 -28.50 16 14 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 15 C 0.00 0.24 5.46 84.65 0.46 0.70 16 16 N -0.93 -55.18 13.29 21.45 0.28 -54.90 16 17 Si 0.97 41.99 29.54 68.60 2.03 44.02 16 18 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 19 H -0.29 -12.36 7.11 99.48 0.71 -11.66 16 20 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 21 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 22 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 23 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.35 7.56 8.98 -89.69 -0.81 6.76 16 25 H 0.35 6.53 9.04 -89.69 -0.81 5.72 16 26 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.08 2.60 7.36 -2.39 -0.02 2.58 16 28 H 0.19 5.23 8.06 -2.91 -0.02 5.21 16 29 H 0.19 5.46 8.06 -2.91 -0.02 5.43 16 30 H 0.09 3.31 7.92 -2.39 -0.02 3.29 16 31 H 0.09 3.37 8.13 -2.39 -0.02 3.35 16 32 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 33 H 0.00 -0.26 7.67 -2.39 -0.02 -0.28 16 34 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -65.62 290.87 1.97 -63.65 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -0.53 Total: 24.95 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: 5.22 Total: -15.71 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -4.76 Total: -116.92 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -65.62 1.97 -63.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062802803.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.004 kcal (2) G-P(sol) polarization free energy of solvation -65.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds