Wall clock time and date at job start Mon Mar 30 2020 02:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47677 * 2 1 4 4 N 1.46904 * 109.46789 * 119.99742 * 2 1 3 5 5 C 1.52997 * 109.47387 * 239.99462 * 2 1 3 6 6 C 1.50697 * 109.47181 * 175.00325 * 5 2 1 7 7 N 1.30494 * 125.64669 * 269.95373 * 6 5 2 8 8 C 1.34139 * 109.25621 * 180.02562 * 7 6 5 9 9 C 1.34667 * 108.01541 * 359.73530 * 8 7 6 10 10 N 1.35042 * 125.65380 * 90.00531 * 6 5 2 11 11 C 1.46505 * 126.39355 * 359.95869 * 10 6 5 12 12 C 1.52997 * 109.47212 * 85.00361 * 11 10 6 13 13 C 1.50697 * 109.47466 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99563 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00432 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46838 * 89.99826 * 17 15 13 19 19 H 1.48497 * 109.47419 * 209.99978 * 17 15 13 20 20 H 1.48499 * 109.47011 * 330.00539 * 17 15 13 21 21 H 1.08995 * 109.47257 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46892 * 300.00667 * 1 2 3 23 23 H 1.09003 * 109.46884 * 60.00100 * 1 2 3 24 24 H 1.00895 * 111.00207 * 60.00227 * 4 2 1 25 25 H 1.00903 * 110.99772 * 183.95119 * 4 2 1 26 26 H 1.09004 * 109.46687 * 55.00069 * 5 2 1 27 27 H 1.09000 * 109.46857 * 295.00391 * 5 2 1 28 28 H 1.07995 * 125.98771 * 180.02562 * 8 7 6 29 29 H 1.08002 * 126.58990 * 180.28301 * 9 8 7 30 30 H 1.09002 * 109.47068 * 205.00421 * 11 10 6 31 31 H 1.09001 * 109.47372 * 325.00508 * 11 10 6 32 32 H 1.09002 * 109.47153 * 300.00008 * 12 11 10 33 33 H 1.08998 * 109.47533 * 59.99637 * 12 11 10 34 34 H 0.97002 * 119.99731 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0400 -0.7213 -1.2491 6 6 3.5419 -0.6151 -1.3125 7 7 4.2128 0.3376 -1.9002 8 6 5.5264 0.1071 -1.7565 9 6 5.6750 -1.0284 -1.0480 10 7 4.4165 -1.4903 -0.7715 11 6 4.0809 -2.7038 -0.0225 12 6 3.8428 -3.8568 -0.9997 13 6 3.4982 -5.1053 -0.2293 14 1 3.4531 -5.0789 0.8494 15 6 3.2394 -6.2809 -0.9016 16 7 3.2938 -6.3128 -2.2152 17 14 2.8130 -7.8286 0.0534 18 1 1.3420 -7.9036 0.2432 19 1 3.2760 -9.0201 -0.7024 20 1 3.4818 -7.7925 1.3788 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.6961 -1.6479 1.2229 25 1 3.0261 -0.6501 1.2560 26 1 1.6054 -0.2618 -2.1369 27 1 1.7516 -1.7716 -1.2054 28 1 6.3248 0.7265 -2.1377 29 1 6.6079 -1.4878 -0.7563 30 1 4.9040 -2.9578 0.6455 31 1 3.1778 -2.5314 0.5630 32 1 3.0197 -3.6028 -1.6676 33 1 4.7458 -4.0292 -1.5852 34 1 3.1114 -7.1398 -2.6883 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062802804.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:54 Heat of formation + Delta-G solvation = 39.564359 kcal Electronic energy + Delta-G solvation = -15486.454474 eV Core-core repulsion = 13033.516615 eV Total energy + Delta-G solvation = -2452.937859 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.70317 -36.59177 -34.71120 -32.68402 -30.37596 -29.49017 -28.91673 -26.23341 -25.00546 -21.77727 -21.16979 -20.69231 -18.98948 -17.02688 -16.23481 -15.79340 -15.06423 -14.53787 -14.50745 -14.26816 -13.52033 -13.25974 -12.89802 -12.88666 -12.39768 -11.95623 -11.81700 -11.61815 -11.38496 -11.12819 -10.89387 -10.77562 -10.39355 -10.16417 -9.61471 -9.42239 -8.90843 -8.69469 -8.58613 -7.87035 -6.22913 -4.29801 2.51734 3.18820 3.25361 3.27558 3.37449 3.52603 4.27977 4.63170 4.73529 5.11342 5.13216 5.25412 5.32965 5.45582 5.51420 5.68498 5.80397 5.89242 5.92203 6.01000 6.14166 6.23804 6.30522 6.31765 6.79127 7.15739 7.23685 7.32352 7.38839 7.52031 7.61971 7.77079 8.06308 8.53397 8.75898 9.36683 10.87863 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.025648 B = 0.008096 C = 0.006811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.436368 B = 3457.528780 C = 4109.792884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.094 3.906 3 H 0.083 0.917 4 N -0.845 5.845 5 C -0.073 4.073 6 C 0.202 3.798 7 N -0.500 5.500 8 C -0.043 4.043 9 C -0.054 4.054 10 N -0.440 5.440 11 C 0.094 3.906 12 C 0.015 3.985 13 C -0.532 4.532 14 H 0.060 0.940 15 C 0.063 3.937 16 N -0.888 5.888 17 Si 0.898 3.102 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.272 1.272 21 H 0.057 0.943 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.343 0.657 25 H 0.339 0.661 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.163 0.837 29 H 0.168 0.832 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.030 9.032 3.972 9.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.019 4.019 3 H 0.101 0.899 4 N -0.377 5.377 5 C -0.114 4.114 6 C -0.060 4.060 7 N -0.219 5.219 8 C -0.192 4.192 9 C -0.189 4.189 10 N -0.120 5.120 11 C -0.027 4.027 12 C -0.022 4.022 13 C -0.571 4.571 14 H 0.078 0.922 15 C -0.140 4.140 16 N -0.525 5.525 17 Si 0.725 3.275 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.157 0.843 25 H 0.153 0.847 26 H 0.112 0.888 27 H 0.105 0.895 28 H 0.180 0.820 29 H 0.185 0.815 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.854 9.974 3.910 10.872 hybrid contribution 0.925 -2.383 0.003 2.556 sum -0.929 7.591 3.913 8.591 Atomic orbital electron populations 1.21784 0.93995 1.02328 1.01972 1.21438 0.95435 0.98278 0.86728 0.89897 1.59073 1.16367 1.21650 1.40592 1.20945 0.85986 1.03015 1.01433 1.22990 0.94178 0.89008 0.99866 1.70137 1.04353 1.25314 1.22102 1.22136 0.93783 0.98293 1.05000 1.22674 0.88924 0.99628 1.07700 1.45800 1.06007 1.19983 1.40231 1.22543 1.01448 0.82883 0.95826 1.19409 0.98099 0.90642 0.94070 1.20973 1.49091 0.93863 0.93148 0.92190 1.25008 0.94940 0.99191 0.94889 1.69972 1.48129 1.27697 1.06716 0.86501 0.78805 0.82307 0.79891 1.20398 1.21041 1.19691 0.92410 0.91860 0.92076 0.84265 0.84699 0.88849 0.89542 0.81988 0.81459 0.89959 0.90157 0.95898 0.95855 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.49 37.16 0.35 -1.29 16 2 C 0.09 1.27 3.40 -67.71 -0.23 1.04 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 4 N -0.85 -11.73 8.46 -4.67 -0.04 -11.77 16 5 C -0.07 -1.13 5.02 -27.89 -0.14 -1.27 16 6 C 0.20 3.65 6.45 -155.42 -1.00 2.65 16 7 N -0.50 -9.44 11.25 -10.82 -0.12 -9.56 16 8 C -0.04 -0.73 11.87 -17.81 -0.21 -0.95 16 9 C -0.05 -0.91 11.58 -16.56 -0.19 -1.10 16 10 N -0.44 -7.92 2.47 -113.91 -0.28 -8.20 16 11 C 0.09 1.75 5.12 -4.04 -0.02 1.73 16 12 C 0.02 0.37 5.30 -27.89 -0.15 0.22 16 13 C -0.53 -13.80 9.11 -34.44 -0.31 -14.11 16 14 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 17 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.34 4.75 7.57 -39.29 -0.30 4.45 16 25 H 0.34 4.99 6.93 -39.29 -0.27 4.71 16 26 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.09 1.44 7.36 -51.93 -0.38 1.06 16 28 H 0.16 2.24 8.06 -52.49 -0.42 1.82 16 29 H 0.17 2.36 8.06 -52.49 -0.42 1.93 16 30 H 0.08 1.45 8.13 -51.93 -0.42 1.03 16 31 H 0.08 1.37 4.79 -51.93 -0.25 1.12 16 32 H 0.02 0.59 7.67 -51.93 -0.40 0.20 16 33 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 282.58 15.07 4.26 4.26 Total: -1.00 -29.39 282.58 -7.42 -36.81 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -4.94 Total: 9.28 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -2.00 Total: -11.48 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.29 Total: -54.29 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.39 -7.42 -36.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062802804.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.375 kcal (2) G-P(sol) polarization free energy of solvation -29.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds