Wall clock time and date at job start Mon Mar 30 2020 02:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.46777 * 2 1 4 4 C 1.37669 * 126.49668 * 4.84310 * 3 2 1 5 5 C 1.34374 * 106.94775 * 180.23980 * 4 3 2 6 6 N 1.34389 * 108.31685 * 359.77591 * 5 4 3 7 7 C 1.31200 * 109.30865 * 0.02562 * 6 5 4 8 8 N 1.38491 * 125.79607 * 179.97438 * 7 6 5 9 9 C 1.46898 * 111.00152 * 101.67302 * 8 7 6 10 10 C 1.46901 * 110.99703 * 337.71573 * 8 7 6 11 11 H 1.09004 * 109.46936 * 60.00682 * 10 8 7 12 12 C 1.52993 * 109.47520 * 300.00231 * 10 8 7 13 13 C 1.50704 * 109.46964 * 180.02562 * 10 8 7 14 14 H 1.07996 * 120.00101 * 0.02562 * 13 10 8 15 15 C 1.37878 * 119.99941 * 180.02562 * 13 10 8 16 16 N 1.31517 * 120.00085 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 119.99998 * 180.02562 * 15 13 10 18 18 H 1.48506 * 109.47286 * 59.99667 * 17 15 13 19 19 H 1.48504 * 109.47322 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47280 * 299.99814 * 17 15 13 21 21 H 1.09001 * 109.46675 * 177.45405 * 1 2 3 22 22 H 1.08998 * 109.47327 * 297.44478 * 1 2 3 23 23 H 1.08993 * 109.47111 * 57.45154 * 1 2 3 24 24 H 1.08995 * 109.46901 * 240.00227 * 2 1 3 25 25 H 1.09001 * 109.47038 * 119.99966 * 2 1 3 26 26 H 1.08001 * 126.52730 * 359.97438 * 4 3 2 27 27 H 1.07996 * 125.84345 * 179.73655 * 5 4 3 28 28 H 1.08997 * 109.47359 * 53.49501 * 9 8 7 29 29 H 1.09004 * 109.46678 * 173.49478 * 9 8 7 30 30 H 1.08996 * 109.46943 * 293.48945 * 9 8 7 31 31 H 1.08999 * 109.47429 * 59.99597 * 12 10 8 32 32 H 1.09001 * 109.47610 * 179.97438 * 12 10 8 33 33 H 1.09004 * 109.47385 * 300.00177 * 12 10 8 34 34 H 0.96996 * 120.00288 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.2515 2.5208 0.0934 5 6 2.0955 3.5655 0.0501 6 7 3.3483 3.0920 -0.0616 7 6 3.3155 1.7807 -0.0902 8 7 4.4146 0.9452 -0.1987 9 6 4.7730 0.3744 1.1065 10 6 5.5559 1.6515 -0.7958 11 1 5.8244 2.5025 -0.1697 12 6 5.1757 2.1459 -2.1928 13 6 6.7301 0.7124 -0.8981 14 1 6.6377 -0.3072 -0.5545 15 6 7.9225 1.1550 -1.4305 16 7 8.0350 2.3966 -1.8495 17 14 9.3777 -0.0092 -1.5580 18 1 9.0115 -1.1677 -2.4120 19 1 10.5315 0.7049 -2.1615 20 1 9.7468 -0.4905 -0.2026 21 1 -0.3633 -1.0267 -0.0457 22 1 -0.3634 0.4736 0.9120 23 1 -0.3633 0.5529 -0.8662 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 0.1760 2.5665 0.1803 27 1 1.8151 4.6074 0.0964 28 1 3.8979 -0.1037 1.5467 29 1 5.5634 -0.3646 0.9752 30 1 5.1237 1.1681 1.7661 31 1 4.3262 2.8250 -2.1193 32 1 6.0223 2.6704 -2.6357 33 1 4.9072 1.2949 -2.8189 34 1 8.8736 2.7079 -2.2244 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063096023.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:16 Heat of formation + Delta-G solvation = 78.555486 kcal Electronic energy + Delta-G solvation = -15819.264278 eV Core-core repulsion = 13368.017201 eV Total energy + Delta-G solvation = -2451.247077 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.42281 -36.65628 -34.62577 -32.73978 -29.83133 -29.01319 -28.36486 -25.34025 -24.33253 -23.34916 -21.31107 -19.94813 -18.78121 -16.82609 -16.07362 -15.81406 -14.92779 -14.31527 -14.09793 -13.89654 -13.09436 -13.02652 -12.84631 -12.53654 -12.27099 -11.87047 -11.67939 -11.50223 -10.99754 -10.83469 -10.67064 -10.17089 -10.09105 -9.95472 -9.29693 -9.10642 -8.87520 -8.45402 -8.15408 -7.11973 -5.97141 -4.03841 2.58329 3.12236 3.33611 3.38347 3.40370 3.75604 4.41067 4.75587 4.82717 4.95566 5.16838 5.32183 5.35235 5.59353 5.72969 5.75868 5.85346 5.94886 6.15936 6.27962 6.55586 6.69160 6.97685 7.08153 7.20347 7.31927 7.46273 7.60577 7.81423 7.96865 8.10094 8.33843 8.67002 8.80835 9.03153 9.60166 11.09336 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.043056 B = 0.007859 C = 0.007156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.163875 B = 3562.128261 C = 3912.064383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.109 3.891 3 N -0.465 5.465 4 C -0.082 4.082 5 C -0.022 4.022 6 N -0.510 5.510 7 C 0.410 3.590 8 N -0.469 5.469 9 C 0.047 3.953 10 C 0.232 3.768 11 H 0.024 0.976 12 C -0.131 4.131 13 C -0.515 4.515 14 H 0.063 0.937 15 C 0.063 3.937 16 N -0.886 5.886 17 Si 0.898 3.102 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 H 0.074 0.926 22 H 0.062 0.938 23 H 0.065 0.935 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.165 0.835 27 H 0.160 0.840 28 H 0.040 0.960 29 H 0.088 0.912 30 H 0.029 0.971 31 H 0.022 0.978 32 H 0.086 0.914 33 H 0.023 0.977 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.984 -3.926 4.155 14.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.013 4.013 3 N -0.153 5.153 4 C -0.214 4.214 5 C -0.172 4.172 6 N -0.232 5.232 7 C 0.058 3.942 8 N -0.194 5.194 9 C -0.101 4.101 10 C 0.128 3.872 11 H 0.041 0.959 12 C -0.189 4.189 13 C -0.554 4.554 14 H 0.081 0.919 15 C -0.140 4.140 16 N -0.524 5.524 17 Si 0.726 3.274 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 H 0.092 0.908 22 H 0.081 0.919 23 H 0.084 0.916 24 H 0.105 0.895 25 H 0.095 0.905 26 H 0.183 0.817 27 H 0.178 0.822 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.041 0.959 32 H 0.104 0.896 33 H 0.042 0.958 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.292 -3.861 3.708 13.407 hybrid contribution 0.150 -0.499 0.323 0.613 sum -12.142 -4.360 4.031 13.516 Atomic orbital electron populations 1.22020 0.94052 1.03048 1.02822 1.21657 0.95037 0.81048 1.03595 1.45668 1.06469 1.06534 1.56636 1.22261 0.97546 0.85513 1.16055 1.22095 0.89203 0.98611 1.07244 1.70933 1.22801 1.06710 1.22777 1.21533 0.84117 0.87986 1.00581 1.59146 1.05563 1.32650 1.22034 1.22209 0.99974 0.99649 0.88247 1.19237 0.83433 0.92462 0.92089 0.95860 1.21781 1.00385 0.98568 0.98167 1.21098 0.95081 0.97528 1.41661 0.91929 1.24901 0.98578 0.95198 0.95280 1.69917 1.25990 1.15244 1.41298 0.86564 0.81762 0.80770 0.78287 1.20270 1.21284 1.20296 0.90751 0.91904 0.91643 0.89451 0.90498 0.81740 0.82238 0.94089 0.89352 0.95268 0.95934 0.89561 0.95816 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 8.84 37.16 0.33 -1.17 16 2 C 0.11 1.43 7.12 -4.04 -0.03 1.40 16 3 N -0.47 -8.00 3.20 -117.50 -0.38 -8.37 16 4 C -0.08 -1.28 10.47 -16.29 -0.17 -1.45 16 5 C -0.02 -0.41 11.84 -17.80 -0.21 -0.62 16 6 N -0.51 -11.56 9.09 -13.92 -0.13 -11.69 16 7 C 0.41 8.84 5.87 -319.61 -1.88 6.97 16 8 N -0.47 -10.74 4.60 -176.25 -0.81 -11.55 16 9 C 0.05 0.94 9.14 60.06 0.55 1.49 16 10 C 0.23 6.22 1.72 -68.87 -0.12 6.10 16 11 H 0.02 0.71 7.88 -51.93 -0.41 0.30 16 12 C -0.13 -3.51 8.80 37.15 0.33 -3.19 16 13 C -0.51 -14.26 7.95 -34.44 -0.27 -14.53 16 14 H 0.06 1.67 6.40 -52.49 -0.34 1.34 16 15 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 16 N -0.89 -25.92 11.32 55.43 0.63 -25.29 16 17 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.06 0.55 7.88 -51.93 -0.41 0.14 16 23 H 0.06 0.62 7.94 -51.93 -0.41 0.21 16 24 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.08 0.94 7.23 -51.93 -0.38 0.57 16 26 H 0.17 1.88 7.34 -52.49 -0.39 1.50 16 27 H 0.16 2.39 8.06 -52.49 -0.42 1.97 16 28 H 0.04 0.68 7.06 -51.93 -0.37 0.32 16 29 H 0.09 1.77 6.33 -51.93 -0.33 1.44 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.02 0.58 6.28 -51.93 -0.33 0.25 16 32 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 33 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 275.46 15.07 4.15 4.15 Total: -1.00 -31.88 275.46 -8.04 -39.92 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -4.91 Total: -0.13 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -1.57 Total: -3.35 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -0.69 Total: -56.90 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.88 -8.04 -39.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096023.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.473 kcal (2) G-P(sol) polarization free energy of solvation -31.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds