Wall clock time and date at job start Mon Mar 30 2020 02:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.46777 * 2 1 4 4 C 1.37669 * 126.49668 * 4.84310 * 3 2 1 5 5 C 1.34374 * 106.94775 * 180.23980 * 4 3 2 6 6 N 1.34389 * 108.31685 * 359.77591 * 5 4 3 7 7 C 1.31200 * 109.30865 * 0.02562 * 6 5 4 8 8 N 1.38491 * 125.79607 * 179.97438 * 7 6 5 9 9 C 1.46898 * 111.00152 * 101.67302 * 8 7 6 10 10 C 1.46901 * 110.99703 * 337.71573 * 8 7 6 11 11 H 1.09004 * 109.46936 * 60.00682 * 10 8 7 12 12 C 1.52993 * 109.47520 * 300.00231 * 10 8 7 13 13 C 1.50704 * 109.46964 * 180.02562 * 10 8 7 14 14 H 1.07996 * 120.00101 * 0.02562 * 13 10 8 15 15 C 1.37878 * 119.99941 * 180.02562 * 13 10 8 16 16 N 1.31517 * 120.00085 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 119.99998 * 180.02562 * 15 13 10 18 18 H 1.48506 * 109.47286 * 59.99667 * 17 15 13 19 19 H 1.48504 * 109.47322 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47280 * 299.99814 * 17 15 13 21 21 H 1.09001 * 109.46675 * 177.45405 * 1 2 3 22 22 H 1.08998 * 109.47327 * 297.44478 * 1 2 3 23 23 H 1.08993 * 109.47111 * 57.45154 * 1 2 3 24 24 H 1.08995 * 109.46901 * 240.00227 * 2 1 3 25 25 H 1.09001 * 109.47038 * 119.99966 * 2 1 3 26 26 H 1.08001 * 126.52730 * 359.97438 * 4 3 2 27 27 H 1.07996 * 125.84345 * 179.73655 * 5 4 3 28 28 H 1.08997 * 109.47359 * 53.49501 * 9 8 7 29 29 H 1.09004 * 109.46678 * 173.49478 * 9 8 7 30 30 H 1.08996 * 109.46943 * 293.48945 * 9 8 7 31 31 H 1.08999 * 109.47429 * 59.99597 * 12 10 8 32 32 H 1.09001 * 109.47610 * 179.97438 * 12 10 8 33 33 H 1.09004 * 109.47385 * 300.00177 * 12 10 8 34 34 H 0.96996 * 120.00288 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.2515 2.5208 0.0934 5 6 2.0955 3.5655 0.0501 6 7 3.3483 3.0920 -0.0616 7 6 3.3155 1.7807 -0.0902 8 7 4.4146 0.9452 -0.1987 9 6 4.7730 0.3744 1.1065 10 6 5.5559 1.6515 -0.7958 11 1 5.8244 2.5025 -0.1697 12 6 5.1757 2.1459 -2.1928 13 6 6.7301 0.7124 -0.8981 14 1 6.6377 -0.3072 -0.5545 15 6 7.9225 1.1550 -1.4305 16 7 8.0350 2.3966 -1.8495 17 14 9.3777 -0.0092 -1.5580 18 1 9.0115 -1.1677 -2.4120 19 1 10.5315 0.7049 -2.1615 20 1 9.7468 -0.4905 -0.2026 21 1 -0.3633 -1.0267 -0.0457 22 1 -0.3634 0.4736 0.9120 23 1 -0.3633 0.5529 -0.8662 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 0.1760 2.5665 0.1803 27 1 1.8151 4.6074 0.0964 28 1 3.8979 -0.1037 1.5467 29 1 5.5634 -0.3646 0.9752 30 1 5.1237 1.1681 1.7661 31 1 4.3262 2.8250 -2.1193 32 1 6.0223 2.6704 -2.6357 33 1 4.9072 1.2949 -2.8189 34 1 8.8736 2.7079 -2.2244 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063096023.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:16 Heat of formation + Delta-G solvation = 58.788470 kcal Electronic energy + Delta-G solvation = -15820.121440 eV Core-core repulsion = 13368.017201 eV Total energy + Delta-G solvation = -2452.104239 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.85642 -38.45785 -35.80481 -34.79701 -31.41087 -30.60575 -29.85797 -27.31124 -26.08442 -24.49228 -23.16306 -21.34248 -20.36100 -18.47502 -17.91729 -17.26378 -16.63229 -15.87728 -15.68625 -15.50020 -14.63217 -14.47317 -14.22538 -14.05309 -13.54262 -13.46445 -13.00717 -12.84136 -12.66891 -12.61988 -12.36635 -12.17396 -12.10399 -11.95892 -11.11374 -10.75057 -10.56186 -10.36968 -9.92303 -8.70360 -8.10790 -6.25935 1.19681 1.44264 1.47537 1.54860 1.80857 2.27893 2.43920 3.15350 3.27491 3.84743 4.00154 4.08661 4.26572 4.39259 4.56475 4.58438 4.76477 4.84603 4.88635 4.91186 4.95422 5.03770 5.14932 5.16048 5.33446 5.50940 5.61670 5.67311 5.92064 6.02142 6.20280 6.25985 6.82076 6.92254 7.35134 7.45283 8.96026 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.043056 B = 0.007859 C = 0.007156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.163875 B = 3562.128261 C = 3912.064383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.099 3.901 3 N -0.457 5.457 4 C -0.045 4.045 5 C -0.058 4.058 6 N -0.559 5.559 7 C 0.370 3.630 8 N -0.470 5.470 9 C 0.051 3.949 10 C 0.245 3.755 11 H -0.025 1.025 12 C -0.112 4.112 13 C -0.530 4.530 14 H 0.071 0.929 15 C 0.010 3.990 16 N -0.921 5.921 17 Si 0.970 3.030 18 H -0.268 1.268 19 H -0.286 1.286 20 H -0.267 1.267 21 H 0.098 0.902 22 H 0.074 0.926 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.216 0.784 27 H 0.182 0.818 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.009 0.991 31 H 0.021 0.979 32 H 0.061 0.939 33 H 0.022 0.978 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.905 -5.668 4.650 16.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 N -0.144 5.144 4 C -0.178 4.178 5 C -0.205 4.205 6 N -0.283 5.283 7 C 0.017 3.983 8 N -0.194 5.194 9 C -0.097 4.097 10 C 0.139 3.861 11 H -0.008 1.008 12 C -0.171 4.171 13 C -0.568 4.568 14 H 0.089 0.911 15 C -0.189 4.189 16 N -0.560 5.560 17 Si 0.794 3.206 18 H -0.193 1.193 19 H -0.211 1.211 20 H -0.192 1.192 21 H 0.117 0.883 22 H 0.093 0.907 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.104 0.896 26 H 0.233 0.767 27 H 0.199 0.801 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.027 0.973 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.041 0.959 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.250 -5.632 4.217 15.892 hybrid contribution 0.603 0.095 0.209 0.645 sum -13.647 -5.537 4.426 15.378 Atomic orbital electron populations 1.22002 0.90568 1.04922 1.03422 1.22018 0.97863 0.78714 1.03625 1.45906 1.05011 1.08592 1.54924 1.23004 0.99212 0.83963 1.11589 1.22608 0.88282 1.00644 1.09007 1.70781 1.25881 1.08061 1.23575 1.21354 0.85189 0.87892 1.03816 1.59022 1.04748 1.32401 1.23208 1.22228 1.01444 0.98828 0.87151 1.18818 0.85074 0.91104 0.91107 1.00774 1.21547 0.99134 0.98044 0.98353 1.21416 0.95760 0.97947 1.41693 0.91140 1.25821 1.01552 0.96775 0.94710 1.70078 1.26718 1.17218 1.41993 0.85439 0.77846 0.78569 0.78731 1.19303 1.21127 1.19172 0.88318 0.90694 0.91544 0.90400 0.89552 0.76737 0.80101 0.90520 0.89673 0.97261 0.96009 0.92050 0.95904 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.84 71.98 0.64 -1.49 16 2 C 0.10 2.29 7.12 86.38 0.61 2.91 16 3 N -0.46 -14.79 3.20 -525.67 -1.68 -16.47 16 4 C -0.05 -1.27 10.47 82.89 0.87 -0.40 16 5 C -0.06 -2.04 11.84 83.42 0.99 -1.05 16 6 N -0.56 -25.89 9.09 -197.95 -1.80 -27.68 16 7 C 0.37 15.98 5.87 260.37 1.53 17.51 16 8 N -0.47 -21.84 4.60 -711.53 -3.27 -25.11 16 9 C 0.05 2.05 9.14 127.69 1.17 3.21 16 10 C 0.24 13.63 1.72 44.17 0.08 13.71 16 11 H -0.03 -1.64 7.88 -2.38 -0.02 -1.65 16 12 C -0.11 -6.28 8.80 71.98 0.63 -5.65 16 13 C -0.53 -29.91 7.95 25.60 0.20 -29.71 16 14 H 0.07 3.78 6.40 -2.91 -0.02 3.76 16 15 C 0.01 0.59 5.30 84.65 0.45 1.04 16 16 N -0.92 -55.53 11.32 21.45 0.24 -55.28 16 17 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 19 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 20 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 21 H 0.10 0.96 8.14 -2.39 -0.02 0.95 16 22 H 0.07 0.91 7.88 -2.39 -0.02 0.89 16 23 H 0.07 0.95 7.94 -2.39 -0.02 0.93 16 24 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.09 1.85 7.23 -2.39 -0.02 1.83 16 26 H 0.22 3.73 7.34 -2.91 -0.02 3.71 16 27 H 0.18 5.24 8.06 -2.91 -0.02 5.21 16 28 H 0.08 2.47 7.06 -2.39 -0.02 2.45 16 29 H 0.08 3.41 6.33 -2.38 -0.02 3.40 16 30 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.02 1.16 6.28 -2.39 -0.02 1.15 16 32 H 0.06 3.70 6.07 -2.39 -0.01 3.69 16 33 H 0.02 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -72.14 275.46 3.75 -68.39 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 1.07 Total: 10.07 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: 7.16 Total: 0.09 kcal Atomic # 7 Polarization: -118.03 SS G_CDS: -6.51 Total: -124.55 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -72.14 3.75 -68.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096023.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.180 kcal (2) G-P(sol) polarization free energy of solvation -72.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds