Wall clock time and date at job start Mon Mar 30 2020 03:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 110.35156 * 2 1 4 4 C 1.55919 * 110.40159 * 122.32446 * 2 1 3 5 5 H 1.08997 * 116.53297 * 318.39714 * 4 2 1 6 6 C 1.55930 * 104.49708 * 189.07302 * 4 2 1 7 7 C 1.54585 * 104.64047 * 289.72214 * 6 4 2 8 8 C 1.55920 * 104.64716 * 359.97438 * 7 6 4 9 9 C 1.53001 * 115.92536 * 199.96299 * 8 7 6 10 10 C 1.56948 * 100.65182 * 326.22367 * 8 7 6 11 11 C 1.55698 * 109.80236 * 237.32272 * 2 1 3 12 12 H 1.08998 * 111.46757 * 359.50314 * 11 2 1 13 13 N 1.46509 * 109.84740 * 122.25636 * 11 2 1 14 14 C 1.36932 * 119.99887 * 234.30350 * 13 11 2 15 15 H 1.07998 * 120.00310 * 0.02562 * 14 13 11 16 16 C 1.38818 * 119.99842 * 179.97438 * 14 13 11 17 17 N 1.31618 * 120.00023 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99772 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47379 * 90.00055 * 18 16 14 20 20 H 1.48503 * 109.47157 * 210.00142 * 18 16 14 21 21 H 1.48503 * 109.47591 * 330.00221 * 18 16 14 22 22 H 1.08998 * 109.47132 * 297.66877 * 1 2 3 23 23 H 1.09001 * 109.46972 * 57.67743 * 1 2 3 24 24 H 1.09004 * 109.46910 * 177.67020 * 1 2 3 25 25 H 1.09004 * 109.46489 * 188.07929 * 3 2 1 26 26 H 1.08999 * 109.47703 * 308.07426 * 3 2 1 27 27 H 1.09002 * 109.47003 * 68.08232 * 3 2 1 28 28 H 1.08994 * 110.40379 * 48.51113 * 6 4 2 29 29 H 1.09003 * 110.39901 * 170.81936 * 6 4 2 30 30 H 1.09002 * 110.40328 * 241.20388 * 7 6 4 31 31 H 1.09005 * 110.39832 * 118.79220 * 7 6 4 32 32 H 1.08999 * 109.47381 * 176.92395 * 9 8 7 33 33 H 1.09004 * 109.46511 * 56.92542 * 9 8 7 34 34 H 1.09002 * 109.47387 * 296.92854 * 9 8 7 35 35 H 1.08998 * 112.02989 * 170.30606 * 10 8 7 36 36 H 1.09008 * 112.02220 * 296.74954 * 10 8 7 37 37 H 0.97002 * 119.99656 * 54.30137 * 13 11 2 38 38 H 0.97002 * 119.99734 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0622 1.4345 0.0000 4 6 2.0736 -0.7814 1.2349 5 1 1.5599 -0.6142 2.1816 6 6 3.6069 -0.4980 1.2322 7 6 4.1458 -1.2755 0.0096 8 6 2.8875 -1.9559 -0.6108 9 6 3.1570 -3.1499 -1.5288 10 6 2.0496 -2.2509 0.6830 11 6 2.0575 -0.7909 -1.2330 12 1 1.2383 -1.1865 -1.8335 13 7 2.9180 0.0719 -2.0465 14 6 2.6564 0.2379 -3.3802 15 1 1.8155 -0.2667 -3.8326 16 6 3.4714 1.0559 -4.1508 17 7 3.2202 1.2151 -5.4330 18 14 4.9246 1.9304 -3.3680 19 1 6.1290 1.0663 -3.4572 20 1 5.1774 3.2073 -4.0828 21 1 4.6227 2.2129 -1.9417 22 1 -0.3633 0.4772 0.9101 23 1 -0.3633 0.5495 -0.8684 24 1 -0.3633 -1.0269 -0.0418 25 1 3.1425 1.4212 -0.1444 26 1 1.5944 1.9957 -0.8089 27 1 1.8289 1.9086 0.9534 28 1 3.7959 0.5693 1.1172 29 1 4.0631 -0.8672 2.1508 30 1 4.8674 -2.0286 0.3261 31 1 4.5997 -0.5903 -0.7064 32 1 2.2094 -3.5761 -1.8582 33 1 3.7256 -3.9047 -0.9856 34 1 3.7280 -2.8195 -2.3965 35 1 1.0383 -2.5828 0.4483 36 1 2.5582 -2.9478 1.3494 37 1 3.6731 0.5254 -1.6401 38 1 3.7900 1.7864 -5.9715 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070632845.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:22 Heat of formation + Delta-G solvation = 15.578333 kcal Electronic energy + Delta-G solvation = -16950.224519 eV Core-core repulsion = 14599.786891 eV Total energy + Delta-G solvation = -2350.437628 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.55443 -34.06307 -33.18353 -31.21519 -30.16212 -28.08456 -26.28758 -25.76207 -23.87630 -22.14505 -20.70153 -18.48572 -18.01265 -16.95787 -15.50419 -14.87439 -14.62554 -13.89570 -13.44490 -13.18438 -12.65124 -12.59775 -12.16518 -12.04390 -11.89823 -11.66920 -11.49272 -11.06982 -10.94277 -10.78869 -10.65906 -10.49322 -10.24709 -10.14626 -10.06996 -9.93201 -9.71141 -9.36459 -9.24259 -8.77796 -7.16288 -5.73733 -3.06353 3.37214 3.39983 3.45969 4.61114 4.86248 4.91493 4.94267 5.41536 5.49668 5.53867 5.57975 5.65708 5.71166 5.79266 5.86788 5.93564 5.98071 6.13133 6.14289 6.20147 6.25324 6.28743 6.33783 6.39419 6.44417 6.49126 6.52321 6.58703 6.75675 6.80088 6.87254 6.94572 7.02672 7.06318 8.05365 8.46494 9.25798 9.98807 10.19903 11.45139 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.029071 B = 0.011419 C = 0.010993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.936303 B = 2451.565879 C = 2546.464784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.082 4.082 3 C -0.125 4.125 4 C -0.094 4.094 5 H 0.086 0.914 6 C -0.127 4.127 7 C -0.115 4.115 8 C -0.093 4.093 9 C -0.114 4.114 10 C -0.120 4.120 11 C 0.198 3.802 12 H 0.072 0.928 13 N -0.736 5.736 14 C -0.237 4.237 15 H 0.089 0.911 16 C 0.004 3.996 17 N -0.936 5.936 18 Si 0.875 3.125 19 H -0.285 1.285 20 H -0.292 1.292 21 H -0.276 1.276 22 H 0.043 0.957 23 H 0.056 0.944 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.036 0.964 28 H 0.069 0.931 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.043 0.957 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.363 0.637 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.695 -4.996 13.838 14.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.084 4.084 3 C -0.182 4.182 4 C -0.113 4.113 5 H 0.104 0.896 6 C -0.165 4.165 7 C -0.153 4.153 8 C -0.095 4.095 9 C -0.171 4.171 10 C -0.158 4.158 11 C 0.087 3.913 12 H 0.090 0.910 13 N -0.378 5.378 14 C -0.367 4.367 15 H 0.107 0.893 16 C -0.191 4.191 17 N -0.584 5.584 18 Si 0.706 3.294 19 H -0.212 1.212 20 H -0.218 1.218 21 H -0.203 1.203 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.199 0.801 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.769 -4.961 13.552 14.539 hybrid contribution 1.169 0.751 0.451 1.461 sum -0.600 -4.211 14.003 14.635 Atomic orbital electron populations 1.21794 0.95270 1.00958 1.00977 1.22346 0.94717 0.95603 0.95756 1.21730 1.01249 0.95406 0.99815 1.23524 0.95420 0.95488 0.96856 0.89587 1.22756 0.95527 1.00702 0.97495 1.22519 0.97217 0.98899 0.96641 1.23370 0.95625 0.96096 0.94439 1.21205 1.01055 0.95670 0.99177 1.23531 0.99433 0.95814 0.96980 1.21513 0.92038 0.88329 0.89469 0.91011 1.43004 1.32614 1.54934 1.07249 1.19170 1.10945 1.23278 0.83322 0.89287 1.24622 0.98868 1.00211 0.95418 1.69692 1.40655 1.42915 1.05138 0.86704 0.84211 0.79806 0.78705 1.21158 1.21809 1.20264 0.93745 0.92523 0.93154 0.92472 0.92169 0.94542 0.91248 0.92988 0.92997 0.91366 0.93014 0.93803 0.91609 0.91767 0.92357 0.80071 0.93194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.36 37.16 0.31 -1.66 16 2 C -0.08 -1.35 0.70 -151.51 -0.11 -1.45 16 3 C -0.12 -2.19 6.79 37.16 0.25 -1.94 16 4 C -0.09 -1.35 4.32 -85.33 -0.37 -1.71 16 5 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 6 C -0.13 -1.88 5.86 -24.33 -0.14 -2.02 16 7 C -0.11 -1.90 5.71 -24.34 -0.14 -2.04 16 8 C -0.09 -1.54 1.32 -149.21 -0.20 -1.74 16 9 C -0.11 -1.84 9.66 37.16 0.36 -1.49 16 10 C -0.12 -1.69 6.03 -22.43 -0.14 -1.82 16 11 C 0.20 3.78 2.71 -64.89 -0.18 3.61 16 12 H 0.07 1.47 7.47 -51.93 -0.39 1.08 16 13 N -0.74 -16.94 3.37 -50.50 -0.17 -17.11 16 14 C -0.24 -6.55 10.42 -15.06 -0.16 -6.71 16 15 H 0.09 2.65 7.91 -52.49 -0.41 2.23 16 16 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 17 N -0.94 -29.34 13.97 55.49 0.78 -28.57 16 18 Si 0.88 22.14 27.73 -169.99 -4.71 17.43 16 19 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 21 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 22 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.05 0.69 7.25 -51.93 -0.38 0.32 16 25 H 0.06 1.07 4.54 -51.93 -0.24 0.84 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.07 5.43 -51.93 -0.28 0.79 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.30 5.83 -51.93 -0.30 1.00 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.06 0.87 7.27 -51.93 -0.38 0.49 16 36 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 37 H 0.36 8.35 2.15 -40.82 -0.09 8.26 16 38 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 278.88 15.07 4.20 4.20 Total: -1.00 -29.40 278.88 -6.79 -36.18 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -6.28 Total: 6.82 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -0.60 Total: -18.96 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.61 Total: -45.67 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.71 Total: 17.43 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.40 -6.79 -36.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070632845.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.763 kcal (2) G-P(sol) polarization free energy of solvation -29.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds