Wall clock time and date at job start Mon Mar 30 2020 03:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 110.35156 * 2 1 4 4 C 1.55919 * 110.40159 * 122.32446 * 2 1 3 5 5 H 1.08997 * 116.53297 * 318.39714 * 4 2 1 6 6 C 1.55930 * 104.49708 * 189.07302 * 4 2 1 7 7 C 1.54585 * 104.64047 * 289.72214 * 6 4 2 8 8 C 1.55920 * 104.64716 * 359.97438 * 7 6 4 9 9 C 1.53001 * 115.92536 * 199.96299 * 8 7 6 10 10 C 1.56948 * 100.65182 * 326.22367 * 8 7 6 11 11 C 1.55698 * 109.80236 * 237.32272 * 2 1 3 12 12 H 1.08998 * 111.46757 * 359.50314 * 11 2 1 13 13 N 1.46509 * 109.84740 * 122.25636 * 11 2 1 14 14 C 1.36932 * 119.99887 * 234.30350 * 13 11 2 15 15 H 1.07998 * 120.00310 * 0.02562 * 14 13 11 16 16 C 1.38818 * 119.99842 * 179.97438 * 14 13 11 17 17 N 1.31618 * 120.00023 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99772 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47379 * 90.00055 * 18 16 14 20 20 H 1.48503 * 109.47157 * 210.00142 * 18 16 14 21 21 H 1.48503 * 109.47591 * 330.00221 * 18 16 14 22 22 H 1.08998 * 109.47132 * 297.66877 * 1 2 3 23 23 H 1.09001 * 109.46972 * 57.67743 * 1 2 3 24 24 H 1.09004 * 109.46910 * 177.67020 * 1 2 3 25 25 H 1.09004 * 109.46489 * 188.07929 * 3 2 1 26 26 H 1.08999 * 109.47703 * 308.07426 * 3 2 1 27 27 H 1.09002 * 109.47003 * 68.08232 * 3 2 1 28 28 H 1.08994 * 110.40379 * 48.51113 * 6 4 2 29 29 H 1.09003 * 110.39901 * 170.81936 * 6 4 2 30 30 H 1.09002 * 110.40328 * 241.20388 * 7 6 4 31 31 H 1.09005 * 110.39832 * 118.79220 * 7 6 4 32 32 H 1.08999 * 109.47381 * 176.92395 * 9 8 7 33 33 H 1.09004 * 109.46511 * 56.92542 * 9 8 7 34 34 H 1.09002 * 109.47387 * 296.92854 * 9 8 7 35 35 H 1.08998 * 112.02989 * 170.30606 * 10 8 7 36 36 H 1.09008 * 112.02220 * 296.74954 * 10 8 7 37 37 H 0.97002 * 119.99656 * 54.30137 * 13 11 2 38 38 H 0.97002 * 119.99734 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0622 1.4345 0.0000 4 6 2.0736 -0.7814 1.2349 5 1 1.5599 -0.6142 2.1816 6 6 3.6069 -0.4980 1.2322 7 6 4.1458 -1.2755 0.0096 8 6 2.8875 -1.9559 -0.6108 9 6 3.1570 -3.1499 -1.5288 10 6 2.0496 -2.2509 0.6830 11 6 2.0575 -0.7909 -1.2330 12 1 1.2383 -1.1865 -1.8335 13 7 2.9180 0.0719 -2.0465 14 6 2.6564 0.2379 -3.3802 15 1 1.8155 -0.2667 -3.8326 16 6 3.4714 1.0559 -4.1508 17 7 3.2202 1.2151 -5.4330 18 14 4.9246 1.9304 -3.3680 19 1 6.1290 1.0663 -3.4572 20 1 5.1774 3.2073 -4.0828 21 1 4.6227 2.2129 -1.9417 22 1 -0.3633 0.4772 0.9101 23 1 -0.3633 0.5495 -0.8684 24 1 -0.3633 -1.0269 -0.0418 25 1 3.1425 1.4212 -0.1444 26 1 1.5944 1.9957 -0.8089 27 1 1.8289 1.9086 0.9534 28 1 3.7959 0.5693 1.1172 29 1 4.0631 -0.8672 2.1508 30 1 4.8674 -2.0286 0.3261 31 1 4.5997 -0.5903 -0.7064 32 1 2.2094 -3.5761 -1.8582 33 1 3.7256 -3.9047 -0.9856 34 1 3.7280 -2.8195 -2.3965 35 1 1.0383 -2.5828 0.4483 36 1 2.5582 -2.9478 1.3494 37 1 3.6731 0.5254 -1.6401 38 1 3.7900 1.7864 -5.9715 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070632845.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:22 Heat of formation + Delta-G solvation = -1.046109 kcal Electronic energy + Delta-G solvation = -16950.945409 eV Core-core repulsion = 14599.786891 eV Total energy + Delta-G solvation = -2351.158518 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.87488 -35.95511 -34.53274 -33.16863 -31.57673 -29.40624 -27.54668 -27.44777 -25.19122 -24.02803 -21.98236 -19.99886 -19.70944 -18.48614 -16.88371 -16.63930 -16.07912 -15.56406 -15.00544 -14.58954 -14.44454 -13.94472 -13.69954 -13.49147 -13.25750 -13.05727 -12.91443 -12.79062 -12.37793 -12.24467 -12.14453 -11.96609 -11.89249 -11.76339 -11.62039 -11.38675 -11.18265 -10.79640 -10.76768 -10.53440 -9.14570 -8.00624 -5.28552 1.31757 1.34358 1.41291 2.46740 3.30139 3.59399 3.61991 3.75657 3.86755 4.22256 4.27014 4.34928 4.40928 4.55917 4.62492 4.65575 4.72718 4.87852 4.89653 4.99322 5.00222 5.03722 5.08347 5.14397 5.16969 5.19141 5.25693 5.33642 5.48044 5.50916 5.54619 5.59614 5.68304 5.73330 5.82882 6.25464 7.12062 7.92295 8.10541 9.21990 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.029071 B = 0.011419 C = 0.010993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.936303 B = 2451.565879 C = 2546.464784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.081 4.081 3 C -0.122 4.122 4 C -0.081 4.081 5 H 0.118 0.882 6 C -0.126 4.126 7 C -0.118 4.118 8 C -0.098 4.098 9 C -0.113 4.113 10 C -0.107 4.107 11 C 0.182 3.818 12 H 0.047 0.953 13 N -0.737 5.737 14 C -0.214 4.214 15 H 0.054 0.946 16 C -0.065 4.065 17 N -0.987 5.987 18 Si 0.940 3.060 19 H -0.281 1.281 20 H -0.297 1.297 21 H -0.254 1.254 22 H 0.069 0.931 23 H 0.031 0.969 24 H 0.061 0.939 25 H 0.043 0.957 26 H 0.028 0.972 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.036 0.964 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.367 0.633 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.419 -5.763 17.761 18.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.083 4.083 3 C -0.179 4.179 4 C -0.099 4.099 5 H 0.136 0.864 6 C -0.163 4.163 7 C -0.156 4.156 8 C -0.100 4.100 9 C -0.170 4.170 10 C -0.145 4.145 11 C 0.073 3.927 12 H 0.065 0.935 13 N -0.380 5.380 14 C -0.345 4.345 15 H 0.072 0.928 16 C -0.255 4.255 17 N -0.639 5.639 18 Si 0.768 3.232 19 H -0.208 1.208 20 H -0.224 1.224 21 H -0.178 1.178 22 H 0.088 0.912 23 H 0.050 0.950 24 H 0.080 0.920 25 H 0.062 0.938 26 H 0.047 0.953 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.203 0.797 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.512 -5.759 17.544 18.526 hybrid contribution 0.995 0.901 -0.786 1.555 sum -0.517 -4.857 16.758 17.455 Atomic orbital electron populations 1.21766 0.94096 1.01681 1.01156 1.22278 0.95663 0.94796 0.95576 1.21697 1.00023 0.96044 1.00166 1.23564 0.95020 0.94618 0.96673 0.86403 1.22757 0.95936 1.00033 0.97555 1.22535 0.97277 0.98924 0.96866 1.23352 0.96102 0.94965 0.95583 1.21194 1.01114 0.96390 0.98280 1.23492 0.99449 0.96335 0.95222 1.21833 0.91385 0.89375 0.90079 0.93504 1.42966 1.33471 1.55859 1.05704 1.19118 1.08882 1.21163 0.85385 0.92823 1.25336 1.02255 1.02042 0.95906 1.69870 1.42402 1.44711 1.06912 0.85640 0.80582 0.78109 0.78845 1.20791 1.22404 1.17847 0.91171 0.94981 0.91972 0.93827 0.95267 0.91625 0.92060 0.90242 0.91311 0.94562 0.92704 0.91102 0.95061 0.91040 0.89937 0.79712 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 8.36 71.98 0.60 -2.97 16 2 C -0.08 -2.48 0.70 -50.24 -0.04 -2.52 16 3 C -0.12 -4.07 6.79 71.98 0.49 -3.58 16 4 C -0.08 -1.91 4.32 -7.37 -0.03 -1.94 16 5 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 6 C -0.13 -3.17 5.86 32.15 0.19 -2.98 16 7 C -0.12 -3.59 5.71 32.14 0.18 -3.41 16 8 C -0.10 -3.06 1.32 -48.75 -0.06 -3.12 16 9 C -0.11 -3.53 9.66 71.98 0.70 -2.84 16 10 C -0.11 -2.54 6.03 33.38 0.20 -2.34 16 11 C 0.18 6.92 2.71 46.96 0.13 7.05 16 12 H 0.05 1.97 7.47 -2.39 -0.02 1.96 16 13 N -0.74 -34.50 3.37 -313.68 -1.06 -35.55 16 14 C -0.21 -12.35 10.42 84.04 0.88 -11.47 16 15 H 0.05 3.41 7.91 -2.91 -0.02 3.39 16 16 C -0.06 -3.89 5.50 84.86 0.47 -3.42 16 17 N -0.99 -64.69 13.97 21.65 0.30 -64.39 16 18 Si 0.94 46.91 27.73 68.60 1.90 48.81 16 19 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 20 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 21 H -0.25 -11.52 6.52 99.48 0.65 -10.87 16 22 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.06 1.55 7.25 -2.38 -0.02 1.53 16 25 H 0.04 1.56 4.54 -2.38 -0.01 1.55 16 26 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.06 1.67 5.43 -2.39 -0.01 1.66 16 29 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.04 1.33 5.83 -2.38 -0.01 1.31 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.62 7.27 -2.39 -0.02 1.61 16 36 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.37 16.81 2.15 -92.71 -0.20 16.61 16 38 H 0.25 15.99 8.31 -92.71 -0.77 15.22 16 Total: -1.00 -66.53 278.88 5.61 -60.92 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.77 Total: 23.75 kcal Atomic # 6 Polarization: -37.24 SS G_CDS: 3.70 Total: -33.54 kcal Atomic # 7 Polarization: -99.19 SS G_CDS: -0.75 Total: -99.95 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.90 Total: 48.81 kcal Total: -66.53 5.61 -60.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070632845.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.872 kcal (2) G-P(sol) polarization free energy of solvation -66.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds