Wall clock time and date at job start Mon Mar 30 2020 03:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 110.45221 * 2 1 4 4 C 1.55931 * 110.40219 * 122.38852 * 2 1 3 5 5 H 1.09003 * 116.52519 * 279.18289 * 4 2 1 6 6 C 1.55918 * 104.49864 * 48.51338 * 4 2 1 7 7 C 1.54584 * 104.64323 * 70.27728 * 6 4 2 8 8 C 1.55921 * 104.74737 * 359.94068 * 7 6 4 9 9 C 1.53001 * 115.92321 * 160.08650 * 8 7 6 10 10 C 1.56951 * 100.65131 * 152.57231 * 4 2 1 11 11 C 1.54804 * 110.33396 * 237.61915 * 2 1 3 12 12 H 1.08999 * 110.45893 * 359.97438 * 11 2 1 13 13 N 1.46499 * 110.46077 * 122.36854 * 11 2 1 14 14 C 1.36933 * 120.00034 * 270.22678 * 13 11 2 15 15 H 1.08003 * 120.00124 * 0.02562 * 14 13 11 16 16 C 1.38818 * 120.00225 * 180.02562 * 14 13 11 17 17 N 1.31615 * 119.99660 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99963 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47092 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46889 * 120.00148 * 18 16 14 21 21 H 1.48500 * 109.46798 * 240.00340 * 18 16 14 22 22 H 1.09000 * 109.47258 * 289.60797 * 1 2 3 23 23 H 1.09004 * 109.47058 * 49.60490 * 1 2 3 24 24 H 1.09003 * 109.47081 * 169.60895 * 1 2 3 25 25 H 1.08996 * 109.47190 * 182.39047 * 3 2 1 26 26 H 1.09001 * 109.46823 * 302.38752 * 3 2 1 27 27 H 1.08996 * 109.47155 * 62.38987 * 3 2 1 28 28 H 1.09000 * 110.40337 * 311.49088 * 6 4 2 29 29 H 1.08998 * 110.50371 * 189.11740 * 6 4 2 30 30 H 1.09003 * 110.40363 * 118.79220 * 7 6 4 31 31 H 1.08997 * 110.40338 * 241.09234 * 7 6 4 32 32 H 1.09005 * 109.46924 * 61.61377 * 9 8 7 33 33 H 1.09004 * 109.47330 * 181.61173 * 9 8 7 34 34 H 1.08998 * 109.47091 * 301.61546 * 9 8 7 35 35 H 1.09002 * 112.02928 * 63.16875 * 10 4 2 36 36 H 1.09000 * 112.02626 * 189.69740 * 10 4 2 37 37 H 0.97003 * 119.99913 * 90.23487 * 13 11 2 38 38 H 0.97004 * 119.99713 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0646 1.4336 0.0000 4 6 2.0736 -0.7829 1.2341 5 1 2.0974 -0.2433 2.1810 6 6 1.2724 -2.1205 1.2317 7 6 1.8113 -2.8966 0.0083 8 6 2.8867 -1.9560 -0.6162 9 6 3.9084 -2.6265 -1.5368 10 6 3.4579 -1.2728 0.6801 11 6 2.0679 -0.7774 -1.2259 12 1 1.2427 -1.1591 -1.8270 13 7 2.9349 0.0812 -2.0366 14 6 2.4002 0.8358 -3.0464 15 1 1.3392 0.7983 -3.2450 16 6 3.2218 1.6490 -3.8151 17 7 4.5148 1.6943 -3.5734 18 14 2.4921 2.6789 -5.1922 19 1 1.0262 2.4509 -5.2575 20 1 2.7579 4.1161 -4.9295 21 1 3.1123 2.2888 -6.4839 22 1 -0.3634 0.3449 0.9681 23 1 -0.3633 0.6660 -0.7827 24 1 -0.3633 -1.0108 -0.1854 25 1 3.1536 1.4153 -0.0429 26 1 1.6758 1.9663 -0.8678 27 1 1.7453 1.9404 0.9106 28 1 0.2062 -1.9246 1.1179 29 1 1.4596 -2.6792 2.1487 30 1 2.2652 -3.8359 0.3240 31 1 1.0096 -3.0840 -0.7060 32 1 3.3936 -3.0692 -2.3895 33 1 4.6227 -1.8827 -1.8898 34 1 4.4367 -3.4054 -0.9870 35 1 4.1217 -0.4409 0.4447 36 1 3.9331 -1.9930 1.3462 37 1 3.8878 0.1151 -1.8581 38 1 5.0889 2.2623 -4.1108 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070632846.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:24 Heat of formation + Delta-G solvation = 6.343985 kcal Electronic energy + Delta-G solvation = -16831.727413 eV Core-core repulsion = 14480.889354 eV Total energy + Delta-G solvation = -2350.838059 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.38475 -34.15619 -32.96411 -31.14185 -28.94332 -28.33914 -26.01062 -25.66025 -23.96907 -22.62163 -20.11318 -18.41597 -17.57746 -16.89998 -15.26810 -14.81166 -14.38790 -13.90315 -13.25074 -13.12113 -12.72440 -12.47171 -12.36323 -11.82998 -11.59153 -11.37934 -11.04054 -10.94130 -10.85021 -10.77210 -10.52390 -10.46757 -10.22424 -10.05717 -9.83377 -9.71560 -9.64913 -9.38622 -9.09475 -8.74704 -6.81789 -5.70516 -2.96306 3.45566 3.51986 3.53511 4.63921 4.93836 4.99042 5.05155 5.56050 5.58484 5.61537 5.69545 5.75016 5.85495 5.91309 5.99077 6.09741 6.13636 6.20428 6.26292 6.30472 6.34806 6.39994 6.44301 6.51598 6.61818 6.66612 6.68508 6.76107 6.85546 6.96509 7.05332 7.14800 7.21317 7.50383 7.77639 8.49033 9.60178 10.21210 10.56198 11.52274 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.034752 B = 0.009904 C = 0.008908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.525720 B = 2826.554913 C = 3142.570858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 C -0.109 4.109 4 C -0.095 4.095 5 H 0.084 0.916 6 C -0.126 4.126 7 C -0.113 4.113 8 C -0.083 4.083 9 C -0.112 4.112 10 C -0.117 4.117 11 C 0.194 3.806 12 H 0.048 0.952 13 N -0.713 5.713 14 C -0.226 4.226 15 H 0.068 0.932 16 C -0.015 4.015 17 N -0.933 5.933 18 Si 0.900 3.100 19 H -0.282 1.282 20 H -0.294 1.294 21 H -0.294 1.294 22 H 0.041 0.959 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.020 0.980 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.384 0.616 38 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.784 -7.070 8.982 12.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.089 4.089 3 C -0.167 4.167 4 C -0.114 4.114 5 H 0.102 0.898 6 C -0.163 4.163 7 C -0.151 4.151 8 C -0.084 4.084 9 C -0.169 4.169 10 C -0.154 4.154 11 C 0.083 3.917 12 H 0.066 0.934 13 N -0.352 5.352 14 C -0.358 4.358 15 H 0.085 0.915 16 C -0.210 4.210 17 N -0.582 5.582 18 Si 0.732 3.268 19 H -0.207 1.207 20 H -0.221 1.221 21 H -0.221 1.221 22 H 0.060 0.940 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.039 0.961 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.218 0.782 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.901 -6.984 8.811 12.265 hybrid contribution -0.109 0.678 -0.695 0.977 sum -5.010 -6.306 8.116 11.434 Atomic orbital electron populations 1.21891 0.96168 1.00666 1.00392 1.22417 0.93918 0.96615 0.95919 1.21491 1.01479 0.94431 0.99283 1.23525 0.95311 0.95317 0.97217 0.89785 1.22730 1.00097 0.96200 0.97261 1.22555 0.98073 0.97500 0.96926 1.23142 0.94955 0.95384 0.94945 1.21168 0.98131 0.99565 0.98028 1.23586 0.96439 0.99279 0.96106 1.21412 0.92160 0.88433 0.89698 0.93377 1.42374 1.06788 1.49796 1.36285 1.19233 0.92643 1.17041 1.06852 0.91452 1.24666 0.95482 1.00910 0.99954 1.69660 1.02785 1.43299 1.42427 0.86218 0.78031 0.80199 0.82401 1.20715 1.22087 1.22093 0.93952 0.93043 0.93063 0.92515 0.91583 0.96097 0.91323 0.93075 0.92747 0.92317 0.92911 0.91380 0.93878 0.91081 0.92707 0.78195 0.93764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 7.42 37.16 0.28 -1.87 16 2 C -0.09 -1.51 0.70 -151.99 -0.11 -1.62 16 3 C -0.11 -2.17 7.52 37.16 0.28 -1.89 16 4 C -0.10 -1.47 4.32 -85.35 -0.37 -1.84 16 5 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 6 C -0.13 -1.72 5.86 -24.34 -0.14 -1.87 16 7 C -0.11 -1.64 5.87 -24.34 -0.14 -1.78 16 8 C -0.08 -1.41 1.23 -149.06 -0.18 -1.60 16 9 C -0.11 -1.90 9.34 37.16 0.35 -1.56 16 10 C -0.12 -1.90 6.05 -22.27 -0.13 -2.03 16 11 C 0.19 3.84 2.34 -65.42 -0.15 3.69 16 12 H 0.05 1.02 7.33 -51.93 -0.38 0.63 16 13 N -0.71 -17.13 3.19 -51.00 -0.16 -17.29 16 14 C -0.23 -6.09 8.63 -15.06 -0.13 -6.22 16 15 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 16 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 17 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 18 Si 0.90 22.39 29.55 -169.99 -5.02 17.37 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 21 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.88 8.13 -51.93 -0.42 0.46 16 24 H 0.05 0.76 6.26 -51.93 -0.32 0.44 16 25 H 0.06 1.22 6.74 -51.93 -0.35 0.87 16 26 H 0.07 1.48 6.96 -51.93 -0.36 1.12 16 27 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.91 5.47 -51.93 -0.28 0.63 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.86 7.84 -51.93 -0.41 0.45 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.31 7.20 -51.93 -0.37 0.94 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 1.29 7.19 -51.93 -0.37 0.92 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.38 9.90 6.90 -40.82 -0.28 9.62 16 38 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 283.19 15.07 4.27 4.27 Total: -1.00 -27.94 283.19 -7.24 -35.17 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.49 Total: 6.55 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: -0.56 Total: -19.09 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.56 Total: -44.26 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.94 -7.24 -35.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070632846.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.517 kcal (2) G-P(sol) polarization free energy of solvation -27.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds