Wall clock time and date at job start Mon Mar 30 2020 03:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 110.45221 * 2 1 4 4 C 1.55931 * 110.40219 * 122.38852 * 2 1 3 5 5 H 1.09003 * 116.52519 * 279.18289 * 4 2 1 6 6 C 1.55918 * 104.49864 * 48.51338 * 4 2 1 7 7 C 1.54584 * 104.64323 * 70.27728 * 6 4 2 8 8 C 1.55921 * 104.74737 * 359.94068 * 7 6 4 9 9 C 1.53001 * 115.92321 * 160.08650 * 8 7 6 10 10 C 1.56951 * 100.65131 * 152.57231 * 4 2 1 11 11 C 1.54804 * 110.33396 * 237.61915 * 2 1 3 12 12 H 1.08999 * 110.45893 * 359.97438 * 11 2 1 13 13 N 1.46499 * 110.46077 * 122.36854 * 11 2 1 14 14 C 1.36933 * 120.00034 * 270.22678 * 13 11 2 15 15 H 1.08003 * 120.00124 * 0.02562 * 14 13 11 16 16 C 1.38818 * 120.00225 * 180.02562 * 14 13 11 17 17 N 1.31615 * 119.99660 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99963 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47092 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46889 * 120.00148 * 18 16 14 21 21 H 1.48500 * 109.46798 * 240.00340 * 18 16 14 22 22 H 1.09000 * 109.47258 * 289.60797 * 1 2 3 23 23 H 1.09004 * 109.47058 * 49.60490 * 1 2 3 24 24 H 1.09003 * 109.47081 * 169.60895 * 1 2 3 25 25 H 1.08996 * 109.47190 * 182.39047 * 3 2 1 26 26 H 1.09001 * 109.46823 * 302.38752 * 3 2 1 27 27 H 1.08996 * 109.47155 * 62.38987 * 3 2 1 28 28 H 1.09000 * 110.40337 * 311.49088 * 6 4 2 29 29 H 1.08998 * 110.50371 * 189.11740 * 6 4 2 30 30 H 1.09003 * 110.40363 * 118.79220 * 7 6 4 31 31 H 1.08997 * 110.40338 * 241.09234 * 7 6 4 32 32 H 1.09005 * 109.46924 * 61.61377 * 9 8 7 33 33 H 1.09004 * 109.47330 * 181.61173 * 9 8 7 34 34 H 1.08998 * 109.47091 * 301.61546 * 9 8 7 35 35 H 1.09002 * 112.02928 * 63.16875 * 10 4 2 36 36 H 1.09000 * 112.02626 * 189.69740 * 10 4 2 37 37 H 0.97003 * 119.99913 * 90.23487 * 13 11 2 38 38 H 0.97004 * 119.99713 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0646 1.4336 0.0000 4 6 2.0736 -0.7829 1.2341 5 1 2.0974 -0.2433 2.1810 6 6 1.2724 -2.1205 1.2317 7 6 1.8113 -2.8966 0.0083 8 6 2.8867 -1.9560 -0.6162 9 6 3.9084 -2.6265 -1.5368 10 6 3.4579 -1.2728 0.6801 11 6 2.0679 -0.7774 -1.2259 12 1 1.2427 -1.1591 -1.8270 13 7 2.9349 0.0812 -2.0366 14 6 2.4002 0.8358 -3.0464 15 1 1.3392 0.7983 -3.2450 16 6 3.2218 1.6490 -3.8151 17 7 4.5148 1.6943 -3.5734 18 14 2.4921 2.6789 -5.1922 19 1 1.0262 2.4509 -5.2575 20 1 2.7579 4.1161 -4.9295 21 1 3.1123 2.2888 -6.4839 22 1 -0.3634 0.3449 0.9681 23 1 -0.3633 0.6660 -0.7827 24 1 -0.3633 -1.0108 -0.1854 25 1 3.1536 1.4153 -0.0429 26 1 1.6758 1.9663 -0.8678 27 1 1.7453 1.9404 0.9106 28 1 0.2062 -1.9246 1.1179 29 1 1.4596 -2.6792 2.1487 30 1 2.2652 -3.8359 0.3240 31 1 1.0096 -3.0840 -0.7060 32 1 3.3936 -3.0692 -2.3895 33 1 4.6227 -1.8827 -1.8898 34 1 4.4367 -3.4054 -0.9870 35 1 4.1217 -0.4409 0.4447 36 1 3.9331 -1.9930 1.3462 37 1 3.8878 0.1151 -1.8581 38 1 5.0889 2.2623 -4.1108 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070632846.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:24 Heat of formation + Delta-G solvation = -8.554466 kcal Electronic energy + Delta-G solvation = -16832.373458 eV Core-core repulsion = 14480.889354 eV Total energy + Delta-G solvation = -2351.484105 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.75571 -35.99796 -34.42097 -32.95627 -30.54679 -29.60798 -27.53755 -27.24968 -25.55140 -24.30079 -21.42141 -19.85490 -19.29122 -18.58755 -16.71550 -16.47414 -15.95693 -15.52871 -14.92271 -14.57952 -14.42822 -13.89087 -13.80054 -13.18088 -13.11510 -12.91675 -12.81923 -12.75867 -12.43913 -12.12834 -12.02865 -11.96714 -11.82970 -11.66893 -11.44245 -11.26759 -11.08929 -10.80226 -10.74549 -10.47719 -8.82645 -7.87372 -5.10966 1.45021 1.45877 1.54651 2.59046 3.44567 3.61322 3.69535 3.80067 4.16080 4.27152 4.36540 4.41692 4.47040 4.61070 4.66584 4.71302 4.79343 4.93613 4.96977 4.98473 5.02686 5.08592 5.11966 5.16360 5.20408 5.26515 5.32983 5.44147 5.51639 5.54509 5.56416 5.62051 5.70749 5.76767 5.86634 6.35690 7.41866 8.23132 8.45923 9.36401 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.034752 B = 0.009904 C = 0.008908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.525720 B = 2826.554913 C = 3142.570858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.085 4.085 3 C -0.100 4.100 4 C -0.087 4.087 5 H 0.101 0.899 6 C -0.118 4.118 7 C -0.107 4.107 8 C -0.087 4.087 9 C -0.108 4.108 10 C -0.115 4.115 11 C 0.183 3.817 12 H 0.033 0.967 13 N -0.719 5.719 14 C -0.214 4.214 15 H 0.066 0.934 16 C -0.076 4.076 17 N -0.968 5.968 18 Si 0.958 3.042 19 H -0.270 1.270 20 H -0.298 1.298 21 H -0.297 1.297 22 H 0.065 0.935 23 H 0.031 0.969 24 H 0.066 0.934 25 H 0.029 0.971 26 H 0.030 0.970 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.071 0.929 35 H 0.041 0.959 36 H 0.079 0.921 37 H 0.372 0.628 38 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.351 -8.600 10.895 15.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.088 4.088 3 C -0.158 4.158 4 C -0.105 4.105 5 H 0.119 0.881 6 C -0.155 4.155 7 C -0.145 4.145 8 C -0.088 4.088 9 C -0.165 4.165 10 C -0.153 4.153 11 C 0.074 3.926 12 H 0.051 0.949 13 N -0.358 5.358 14 C -0.346 4.346 15 H 0.084 0.916 16 C -0.268 4.268 17 N -0.620 5.620 18 Si 0.789 3.211 19 H -0.195 1.195 20 H -0.226 1.226 21 H -0.225 1.225 22 H 0.084 0.916 23 H 0.050 0.950 24 H 0.085 0.915 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.205 0.795 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.517 -8.542 10.747 15.196 hybrid contribution 0.363 1.120 -1.257 1.723 sum -6.154 -7.421 9.490 13.528 Atomic orbital electron populations 1.21852 0.94492 1.01296 1.01039 1.22314 0.95216 0.95010 0.96238 1.21363 0.99585 0.96084 0.98758 1.23531 0.94569 0.95980 0.96435 0.88053 1.22709 1.00109 0.94825 0.97839 1.22536 0.97045 0.97791 0.97127 1.23150 0.95523 0.95136 0.94980 1.21120 0.97713 0.99365 0.98333 1.23562 0.96741 0.98811 0.96144 1.21703 0.91674 0.89300 0.89942 0.94881 1.42475 1.06690 1.50147 1.36445 1.19483 0.92427 1.16094 1.06636 0.91622 1.25328 0.95911 1.02878 1.02634 1.69807 1.03894 1.44616 1.43716 0.85277 0.77858 0.78335 0.79631 1.19465 1.22571 1.22487 0.91643 0.94996 0.91535 0.95166 0.95117 0.93742 0.90418 0.90464 0.90610 0.92448 0.93526 0.94675 0.91017 0.94028 0.90292 0.79542 0.94479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.85 7.42 71.98 0.53 -3.31 16 2 C -0.09 -2.90 0.70 -50.55 -0.04 -2.93 16 3 C -0.10 -3.99 7.52 71.98 0.54 -3.45 16 4 C -0.09 -2.39 4.32 -7.38 -0.03 -2.42 16 5 H 0.10 2.51 8.14 -2.39 -0.02 2.50 16 6 C -0.12 -2.66 5.86 32.14 0.19 -2.47 16 7 C -0.11 -2.72 5.87 32.14 0.19 -2.53 16 8 C -0.09 -2.83 1.23 -48.65 -0.06 -2.89 16 9 C -0.11 -3.62 9.34 71.98 0.67 -2.95 16 10 C -0.12 -3.52 6.05 33.48 0.20 -3.32 16 11 C 0.18 7.21 2.34 46.62 0.11 7.32 16 12 H 0.03 1.39 7.33 -2.39 -0.02 1.37 16 13 N -0.72 -35.70 3.19 -315.27 -1.01 -36.71 16 14 C -0.21 -11.84 8.63 84.04 0.73 -11.11 16 15 H 0.07 3.59 7.83 -2.91 -0.02 3.57 16 16 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 17 N -0.97 -59.71 13.06 21.65 0.28 -59.43 16 18 Si 0.96 47.23 29.55 68.60 2.03 49.26 16 19 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 21 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 22 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 23 H 0.03 1.05 8.13 -2.39 -0.02 1.03 16 24 H 0.07 1.77 6.26 -2.39 -0.01 1.76 16 25 H 0.03 1.33 6.74 -2.39 -0.02 1.31 16 26 H 0.03 1.40 6.96 -2.39 -0.02 1.38 16 27 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.08 1.66 5.47 -2.39 -0.01 1.65 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.48 7.84 -2.39 -0.02 1.46 16 32 H 0.05 1.57 8.14 -2.38 -0.02 1.56 16 33 H 0.03 1.38 7.20 -2.39 -0.02 1.37 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.04 1.51 7.19 -2.39 -0.02 1.50 16 36 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.37 20.16 6.90 -92.71 -0.64 19.52 16 38 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -61.88 283.19 5.19 -56.69 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.38 Total: 24.17 kcal Atomic # 6 Polarization: -37.48 SS G_CDS: 3.50 Total: -33.98 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -0.72 Total: -96.14 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -61.88 5.19 -56.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070632846.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.138 kcal (2) G-P(sol) polarization free energy of solvation -61.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds