Wall clock time and date at job start Mon Mar 30 2020 03:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47859 * 179.97438 * 11 10 9 13 13 C 1.46890 * 111.00688 * 180.02562 * 12 11 10 14 14 H 1.09004 * 110.35571 * 325.70106 * 13 12 11 15 15 C 1.54578 * 110.40375 * 88.02682 * 13 12 11 16 16 C 1.56189 * 104.51813 * 118.76521 * 15 13 12 17 17 H 1.09001 * 115.88165 * 160.08762 * 16 15 13 18 18 C 1.55927 * 105.29332 * 289.60140 * 16 15 13 19 19 C 1.55711 * 104.11046 * 69.52238 * 18 16 15 20 20 C 1.55925 * 104.74099 * 0.97379 * 19 18 16 21 21 H 1.09001 * 116.52788 * 159.74873 * 20 19 18 22 22 C 1.56948 * 100.64238 * 33.86438 * 16 15 13 23 23 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 27 27 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 28 28 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 29 29 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 30 30 H 1.00905 * 110.99920 * 56.03919 * 12 11 10 31 31 H 1.09001 * 110.40409 * 237.58482 * 15 13 12 32 32 H 1.08997 * 110.40451 * 359.97438 * 15 13 12 33 33 H 1.08999 * 110.40726 * 189.25851 * 18 16 15 34 34 H 1.09002 * 110.40267 * 311.68898 * 18 16 15 35 35 H 1.09002 * 110.90155 * 241.87184 * 19 18 16 36 36 H 1.09001 * 109.79990 * 119.52036 * 19 18 16 37 37 H 1.09001 * 112.02856 * 189.64017 * 22 16 15 38 38 H 1.08999 * 112.02599 * 63.11493 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4346 -6.1038 0.0006 13 6 1.7344 -7.3950 0.0005 14 1 0.8117 -7.3260 0.5768 15 6 1.4330 -7.8446 -1.4474 16 6 2.2038 -9.1937 -1.6069 17 1 1.8662 -9.8418 -2.4156 18 6 3.7135 -8.8045 -1.6305 19 6 4.0073 -8.3346 -0.1753 20 6 2.6547 -8.5126 0.5797 21 1 2.7079 -8.5700 1.6669 22 6 2.0765 -9.7738 -0.1541 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 0.8903 25 1 0.6246 -2.5571 -0.8897 26 1 2.8718 -3.6044 -0.8895 27 1 2.8718 -3.6044 0.8904 28 1 0.8537 -5.0445 0.8914 29 1 0.8532 -5.0451 -0.8886 30 1 3.0702 -6.0367 0.7814 31 1 0.3625 -7.9987 -1.5825 32 1 1.8041 -7.1073 -2.1593 33 1 4.3238 -9.6657 -1.9023 34 1 3.8832 -7.9826 -2.3260 35 1 4.3169 -7.2897 -0.1591 36 1 4.7763 -8.9668 0.2687 37 1 2.7028 -10.6540 -0.0089 38 1 1.0391 -9.9663 0.1197 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070632876.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:33 Heat of formation + Delta-G solvation = -18.717349 kcal Electronic energy + Delta-G solvation = -15304.803829 eV Core-core repulsion = 12952.879028 eV Total energy + Delta-G solvation = -2351.924800 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.21143 -35.64130 -33.24604 -31.12878 -29.83398 -28.69928 -27.16010 -25.25977 -22.49953 -21.54124 -20.40091 -19.72734 -18.39475 -16.34083 -16.25943 -15.78506 -15.03246 -14.51914 -14.30865 -13.61489 -12.91964 -12.54152 -12.39743 -12.20364 -11.60546 -11.45669 -11.35933 -11.30605 -10.99206 -10.92907 -10.83015 -10.73915 -10.49643 -10.45021 -10.32421 -9.87018 -9.64544 -9.28494 -8.99839 -8.31830 -8.07163 -5.96791 -3.98660 3.33221 3.40451 3.45174 4.35080 4.46310 4.48672 4.50118 4.72388 5.17774 5.24038 5.26978 5.37608 5.39106 5.48896 5.55252 5.63395 5.74346 5.82472 5.88979 5.97067 6.01457 6.05364 6.11249 6.21072 6.31285 6.35060 6.41351 6.49410 6.77330 6.85045 7.18427 7.46918 7.71175 7.73286 7.87947 8.04130 8.47622 9.08930 9.65261 11.14767 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.062465 B = 0.004479 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.145583 B = 6250.036173 C = 6390.338354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.106 4.106 11 C 0.058 3.942 12 N -0.681 5.681 13 C 0.084 3.916 14 H 0.042 0.958 15 C -0.111 4.111 16 C -0.105 4.105 17 H 0.091 0.909 18 C -0.114 4.114 19 C -0.116 4.116 20 C -0.111 4.111 21 H 0.092 0.908 22 C -0.124 4.124 23 H 0.259 0.741 24 H 0.013 0.987 25 H 0.015 0.985 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.022 0.978 29 H 0.065 0.935 30 H 0.336 0.664 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.682 -19.037 -0.571 19.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.144 4.144 11 C -0.070 4.070 12 N -0.312 5.312 13 C -0.027 4.027 14 H 0.060 0.940 15 C -0.149 4.149 16 C -0.123 4.123 17 H 0.109 0.891 18 C -0.152 4.152 19 C -0.153 4.153 20 C -0.129 4.129 21 H 0.111 0.889 22 C -0.161 4.161 23 H 0.069 0.931 24 H 0.031 0.969 25 H 0.034 0.966 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.155 0.845 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.620 -18.884 -1.258 19.481 hybrid contribution -0.034 0.980 0.953 1.367 sum 4.586 -17.903 -0.306 18.484 Atomic orbital electron populations 1.69980 1.06071 1.26402 1.51204 1.25033 0.94839 0.99262 0.95422 0.86545 0.80154 0.83831 0.77536 1.19721 1.21024 1.21062 1.21306 0.93087 0.91071 1.50102 0.92635 1.19073 0.94051 0.91445 0.97067 1.21610 0.99128 0.93077 1.00600 1.22161 0.94198 0.90935 0.99709 1.60756 1.20012 1.01081 1.49352 1.22549 0.95078 0.89162 0.95872 0.94012 1.22721 0.98829 0.96393 0.96932 1.23579 0.95950 0.96280 0.96502 0.89093 1.22712 0.95142 1.00063 0.97258 1.22711 0.95658 1.02240 0.94722 1.23732 0.96213 0.94843 0.98130 0.88945 1.23540 1.00217 0.96820 0.95566 0.93124 0.96861 0.96624 0.92634 0.93764 0.95969 0.91650 0.84526 0.92517 0.90360 0.92591 0.91482 0.89738 0.92998 0.91510 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.25 5.41 -26.74 -0.14 -2.40 16 11 C 0.06 1.04 5.53 -3.83 -0.02 1.02 16 12 N -0.68 -10.06 4.98 -104.21 -0.52 -10.58 16 13 C 0.08 1.07 2.90 -65.32 -0.19 0.88 16 14 H 0.04 0.57 7.84 -51.93 -0.41 0.16 16 15 C -0.11 -1.36 6.00 -24.19 -0.15 -1.51 16 16 C -0.10 -1.08 5.14 -85.21 -0.44 -1.52 16 17 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 18 C -0.11 -1.21 6.31 -23.72 -0.15 -1.36 16 19 C -0.12 -1.25 6.08 -23.72 -0.14 -1.39 16 20 C -0.11 -1.19 4.81 -85.35 -0.41 -1.60 16 21 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 22 C -0.12 -1.20 6.41 -22.45 -0.14 -1.34 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.02 0.40 8.08 -51.93 -0.42 -0.02 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.34 4.71 7.70 -39.29 -0.30 4.41 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 1.09 7.70 -51.93 -0.40 0.69 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.78 7.88 -51.93 -0.41 0.37 16 35 H 0.08 1.02 6.28 -51.93 -0.33 0.70 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 296.50 15.07 4.47 4.47 Total: -1.00 -29.82 296.50 -9.55 -39.37 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -6.88 Total: -0.94 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: -2.34 Total: -22.58 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.22 Total: -37.30 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.82 -9.55 -39.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070632876.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.649 kcal (2) G-P(sol) polarization free energy of solvation -29.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds