Wall clock time and date at job start Mon Mar 30 2020 03:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47859 * 179.97438 * 11 10 9 13 13 C 1.46890 * 111.00688 * 180.02562 * 12 11 10 14 14 H 1.09004 * 110.35571 * 325.70106 * 13 12 11 15 15 C 1.54578 * 110.40375 * 88.02682 * 13 12 11 16 16 C 1.56189 * 104.51813 * 118.76521 * 15 13 12 17 17 H 1.09001 * 115.88165 * 160.08762 * 16 15 13 18 18 C 1.55927 * 105.29332 * 289.60140 * 16 15 13 19 19 C 1.55711 * 104.11046 * 69.52238 * 18 16 15 20 20 C 1.55925 * 104.74099 * 0.97379 * 19 18 16 21 21 H 1.09001 * 116.52788 * 159.74873 * 20 19 18 22 22 C 1.56948 * 100.64238 * 33.86438 * 16 15 13 23 23 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 27 27 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 28 28 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 29 29 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 30 30 H 1.00905 * 110.99920 * 56.03919 * 12 11 10 31 31 H 1.09001 * 110.40409 * 237.58482 * 15 13 12 32 32 H 1.08997 * 110.40451 * 359.97438 * 15 13 12 33 33 H 1.08999 * 110.40726 * 189.25851 * 18 16 15 34 34 H 1.09002 * 110.40267 * 311.68898 * 18 16 15 35 35 H 1.09002 * 110.90155 * 241.87184 * 19 18 16 36 36 H 1.09001 * 109.79990 * 119.52036 * 19 18 16 37 37 H 1.09001 * 112.02856 * 189.64017 * 22 16 15 38 38 H 1.08999 * 112.02599 * 63.11493 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4346 -6.1038 0.0006 13 6 1.7344 -7.3950 0.0005 14 1 0.8117 -7.3260 0.5768 15 6 1.4330 -7.8446 -1.4474 16 6 2.2038 -9.1937 -1.6069 17 1 1.8662 -9.8418 -2.4156 18 6 3.7135 -8.8045 -1.6305 19 6 4.0073 -8.3346 -0.1753 20 6 2.6547 -8.5126 0.5797 21 1 2.7079 -8.5700 1.6669 22 6 2.0765 -9.7738 -0.1541 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 0.8903 25 1 0.6246 -2.5571 -0.8897 26 1 2.8718 -3.6044 -0.8895 27 1 2.8718 -3.6044 0.8904 28 1 0.8537 -5.0445 0.8914 29 1 0.8532 -5.0451 -0.8886 30 1 3.0702 -6.0367 0.7814 31 1 0.3625 -7.9987 -1.5825 32 1 1.8041 -7.1073 -2.1593 33 1 4.3238 -9.6657 -1.9023 34 1 3.8832 -7.9826 -2.3260 35 1 4.3169 -7.2897 -0.1591 36 1 4.7763 -8.9668 0.2687 37 1 2.7028 -10.6540 -0.0089 38 1 1.0391 -9.9663 0.1197 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070632876.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:32 Heat of formation + Delta-G solvation = -35.408269 kcal Electronic energy + Delta-G solvation = -15305.527601 eV Core-core repulsion = 12952.879028 eV Total energy + Delta-G solvation = -2352.648573 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.12806 -37.15687 -35.20220 -32.92522 -30.76610 -29.76147 -28.50380 -26.80443 -24.24774 -22.55448 -22.02154 -20.77290 -19.33888 -18.48936 -17.24893 -16.92895 -16.56359 -16.03893 -15.83020 -14.97217 -14.32410 -14.03061 -13.94336 -13.37042 -13.15248 -13.02094 -12.71221 -12.55110 -12.38719 -12.22737 -12.11807 -11.83212 -11.79790 -11.60361 -11.50729 -11.37809 -11.26281 -11.06601 -10.71410 -10.57171 -9.31371 -8.21260 -6.32585 1.39474 1.40016 1.53768 2.40451 3.11867 3.22560 3.57358 3.64679 3.78772 4.17678 4.24840 4.37414 4.40202 4.43761 4.51728 4.63052 4.66614 4.70503 4.78182 4.92000 4.98565 5.01072 5.07386 5.16485 5.22806 5.24651 5.28201 5.32683 5.41035 5.46057 5.51364 5.64972 5.73382 5.84374 6.14471 6.27596 6.53732 6.84490 7.36902 8.91073 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.062465 B = 0.004479 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.145583 B = 6250.036173 C = 6390.338354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.025 3.975 10 C -0.090 4.090 11 C 0.073 3.927 12 N -0.677 5.677 13 C 0.078 3.922 14 H 0.034 0.966 15 C -0.114 4.114 16 C -0.100 4.100 17 H 0.106 0.894 18 C -0.115 4.115 19 C -0.116 4.116 20 C -0.106 4.106 21 H 0.104 0.896 22 C -0.116 4.116 23 H 0.264 0.736 24 H -0.010 1.010 25 H -0.011 1.011 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.019 0.981 29 H 0.055 0.945 30 H 0.343 0.657 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.997 -20.070 -0.281 20.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.128 4.128 11 C -0.056 4.056 12 N -0.309 5.309 13 C -0.032 4.032 14 H 0.052 0.948 15 C -0.152 4.152 16 C -0.118 4.118 17 H 0.124 0.876 18 C -0.152 4.152 19 C -0.154 4.154 20 C -0.125 4.125 21 H 0.122 0.878 22 C -0.154 4.154 23 H 0.073 0.927 24 H 0.008 0.992 25 H 0.008 0.992 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.037 0.963 29 H 0.074 0.926 30 H 0.162 0.838 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.946 -19.937 -0.966 20.827 hybrid contribution -0.476 1.282 0.849 1.610 sum 5.470 -18.655 -0.117 19.441 Atomic orbital electron populations 1.70110 1.07870 1.27741 1.51802 1.26013 0.95791 1.03476 0.94655 0.85364 0.79052 0.78568 0.77851 1.18566 1.20301 1.20213 1.21726 0.93543 0.92374 1.50424 0.92223 1.18979 0.94446 0.93266 0.94620 1.21356 0.97944 0.92899 1.00642 1.21838 0.94075 0.90583 0.99094 1.60693 1.19385 1.01058 1.49750 1.22664 0.95256 0.88777 0.96477 0.94780 1.22723 0.99242 0.97292 0.95969 1.23616 0.95296 0.95206 0.97695 0.87556 1.22720 0.95649 1.00118 0.96742 1.22696 0.96064 1.01568 0.95036 1.23767 0.95561 0.94315 0.98829 0.87815 1.23523 1.00778 0.96684 0.94378 0.92748 0.99175 0.99228 0.93002 0.93078 0.96328 0.92638 0.83820 0.92374 0.92519 0.90913 0.93198 0.91410 0.91456 0.89800 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.16 13.29 21.45 0.28 -57.87 16 2 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 3 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 7 C -0.54 -31.90 9.11 25.60 0.23 -31.66 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.02 1.35 4.97 29.85 0.15 1.49 16 10 C -0.09 -3.90 5.41 30.59 0.17 -3.73 16 11 C 0.07 2.66 5.53 86.30 0.48 3.13 16 12 N -0.68 -19.82 4.98 -483.62 -2.41 -22.22 16 13 C 0.08 1.94 2.90 46.47 0.13 2.08 16 14 H 0.03 0.91 7.84 -2.38 -0.02 0.89 16 15 C -0.11 -2.74 6.00 32.24 0.19 -2.55 16 16 C -0.10 -1.85 5.14 -7.29 -0.04 -1.89 16 17 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 18 C -0.11 -2.21 6.31 32.54 0.21 -2.00 16 19 C -0.12 -2.27 6.08 32.54 0.20 -2.07 16 20 C -0.11 -2.05 4.81 -7.38 -0.04 -2.08 16 21 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 22 C -0.12 -1.91 6.41 33.37 0.21 -1.69 16 23 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 24 H -0.01 -0.60 8.14 -2.39 -0.02 -0.61 16 25 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 26 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.02 0.68 8.08 -2.39 -0.02 0.66 16 29 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.34 9.32 7.70 -89.69 -0.69 8.63 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.60 7.70 -2.39 -0.02 1.59 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.05 1.13 7.88 -2.39 -0.02 1.11 16 35 H 0.07 1.56 6.28 -2.39 -0.01 1.55 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -64.05 296.50 2.58 -61.47 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.31 Total: 12.12 kcal Atomic # 6 Polarization: -42.99 SS G_CDS: 2.36 Total: -40.63 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -2.12 Total: -80.10 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -64.05 2.58 -61.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070632876.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.064 kcal (2) G-P(sol) polarization free energy of solvation -64.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds