Wall clock time and date at job start Mon Mar 30 2020 02:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86805 * 119.99954 * 2 1 4 4 H 1.48498 * 109.47060 * 240.00105 * 3 2 1 5 5 H 1.48494 * 109.47001 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46941 * 120.00086 * 3 2 1 7 7 C 1.37878 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00118 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99665 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47063 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47054 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.46781 * 179.69954 * 11 10 9 13 13 C 1.46891 * 111.00487 * 288.42804 * 12 11 10 14 14 C 1.53007 * 109.47293 * 169.99916 * 13 12 11 15 15 C 1.52998 * 117.50000 * 243.62159 * 14 13 12 16 16 C 1.52999 * 60.00227 * 252.51394 * 15 14 13 17 17 C 1.46907 * 111.00082 * 164.47342 * 12 11 10 18 18 C 1.53003 * 117.49620 * 6.34135 * 17 12 11 19 19 C 1.53003 * 117.49650 * 297.68718 * 17 12 11 20 20 H 0.97002 * 120.00231 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.47627 * 60.00289 * 9 7 2 22 22 H 1.09004 * 109.47234 * 299.99758 * 9 7 2 23 23 H 1.09004 * 109.46499 * 299.99719 * 10 9 7 24 24 H 1.08995 * 109.47062 * 59.99454 * 10 9 7 25 25 H 1.08997 * 109.47637 * 299.70323 * 11 10 9 26 26 H 1.09005 * 109.47105 * 59.70799 * 11 10 9 27 27 H 1.09005 * 109.47401 * 289.99920 * 13 12 11 28 28 H 1.09004 * 109.47283 * 49.99999 * 13 12 11 29 29 H 1.08993 * 115.54813 * 29.33480 * 14 13 12 30 30 H 1.09007 * 117.49634 * 0.02562 * 15 14 13 31 31 H 1.08998 * 117.49672 * 145.02182 * 15 14 13 32 32 H 1.09004 * 117.49827 * 252.51359 * 16 15 14 33 33 H 1.08999 * 117.52043 * 107.48187 * 16 15 14 34 34 H 1.08996 * 115.55243 * 152.00812 * 17 12 11 35 35 H 1.09007 * 117.49991 * 0.02562 * 18 17 12 36 36 H 1.08997 * 117.49794 * 145.01920 * 18 17 12 37 37 H 1.09006 * 117.49246 * 214.97521 * 19 17 12 38 38 H 1.09002 * 117.50069 * 359.97438 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9870 0.0001 12 7 2.4348 -6.1036 -0.0072 13 6 3.1001 -6.2190 -1.3117 14 6 4.2540 -7.2186 -1.2091 15 6 5.6706 -6.6882 -1.4389 16 6 5.0023 -7.5683 -2.4970 17 6 1.7744 -7.3633 0.3603 18 6 0.2539 -7.3407 0.5292 19 6 1.1592 -7.4569 1.7580 20 1 -0.4850 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8902 22 1 0.6247 -2.5570 0.8897 23 1 2.8718 -3.6043 -0.8906 24 1 2.8719 -3.6043 0.8894 25 1 0.8579 -5.0469 0.8929 26 1 0.8493 -5.0428 -0.8870 27 1 2.3833 -6.5667 -2.0557 28 1 3.4886 -5.2449 -1.6089 29 1 4.1261 -8.0100 -0.4706 30 1 5.7806 -5.6271 -1.6627 31 1 6.4751 -7.1306 -0.8513 32 1 5.3671 -8.5897 -2.6056 33 1 4.6723 -7.0866 -3.4175 34 1 2.2212 -8.2668 -0.0545 35 1 -0.2564 -6.3911 0.3674 36 1 -0.2995 -8.2294 0.2260 37 1 1.2011 -8.4222 2.2627 38 1 1.2449 -6.5839 2.4051 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070650067.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:01 Heat of formation + Delta-G solvation = 41.876838 kcal Electronic energy + Delta-G solvation = -15236.089010 eV Core-core repulsion = 12886.791771 eV Total energy + Delta-G solvation = -2349.297239 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.09458 -36.95011 -34.51174 -32.95083 -31.00849 -27.28088 -25.29863 -23.12496 -22.36442 -22.17467 -21.00379 -20.24650 -19.02388 -16.59550 -16.18308 -15.62796 -15.01072 -14.46309 -14.26389 -13.87985 -13.38510 -12.99209 -12.53487 -12.14105 -11.91597 -11.51722 -11.35316 -11.30962 -11.02176 -10.90493 -10.68042 -10.54068 -10.41367 -10.27361 -10.11203 -9.89696 -9.53840 -9.29754 -9.03646 -8.31291 -7.83999 -5.96773 -3.98764 3.35729 3.39713 3.42560 3.69357 3.93864 4.24429 4.49410 4.72101 4.93002 5.00224 5.07564 5.08806 5.19675 5.38873 5.46351 5.57610 5.63045 5.73850 5.77052 5.82217 5.91844 5.96520 6.02951 6.09054 6.14020 6.27687 6.30714 6.38566 6.74044 6.80914 7.16431 7.41705 7.43242 7.71423 7.86553 8.03672 8.47273 9.08199 9.65044 11.14684 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025430 B = 0.006056 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.787502 B = 4622.606066 C = 5482.700740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.103 4.103 11 C 0.052 3.948 12 N -0.504 5.504 13 C 0.084 3.916 14 C -0.142 4.142 15 C -0.174 4.174 16 C -0.186 4.186 17 C 0.022 3.978 18 C -0.223 4.223 19 C -0.173 4.173 20 H 0.260 0.740 21 H 0.013 0.987 22 H 0.015 0.985 23 H 0.046 0.954 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.032 0.968 27 H 0.036 0.964 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.360 -16.027 -1.800 16.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.141 4.141 11 C -0.075 4.075 12 N -0.225 5.225 13 C -0.043 4.043 14 C -0.161 4.161 15 C -0.211 4.211 16 C -0.224 4.224 17 C -0.088 4.088 18 C -0.262 4.262 19 C -0.211 4.211 20 H 0.070 0.930 21 H 0.031 0.969 22 H 0.033 0.967 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.103 0.897 29 H 0.123 0.877 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.131 0.869 35 H 0.121 0.879 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.579 -15.786 -1.459 16.806 hybrid contribution -0.233 0.748 -0.543 0.953 sum 5.346 -15.038 -2.002 16.086 Atomic orbital electron populations 1.69953 1.06059 1.26639 1.50993 1.25020 0.94834 0.99212 0.95388 0.86666 0.79588 0.83171 0.78626 1.20276 1.21311 1.20220 1.21213 0.93011 0.91046 1.50403 0.92741 1.19069 0.94027 0.91412 0.97025 1.21651 0.99098 0.92619 1.00770 1.22424 0.93870 0.90765 1.00434 1.61895 1.29817 1.02182 1.28633 1.21717 0.94115 0.98903 0.89598 1.22290 0.93079 1.01402 0.99320 1.22988 0.95777 0.99950 1.02410 1.22967 1.05150 1.00535 0.93728 1.22655 0.92003 0.94175 0.99951 1.23608 0.94849 1.03615 1.04130 1.23047 1.03757 1.02955 0.91353 0.93003 0.96865 0.96674 0.93559 0.92618 0.90860 0.94944 0.94601 0.89749 0.87732 0.88579 0.89148 0.89141 0.88930 0.86946 0.87865 0.89346 0.88984 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.10 -2.21 5.21 -26.73 -0.14 -2.34 16 11 C 0.05 0.93 3.61 -3.83 -0.01 0.91 16 12 N -0.50 -7.81 4.67 -226.64 -1.06 -8.87 16 13 C 0.08 1.19 5.08 -3.82 -0.02 1.17 16 14 C -0.14 -1.71 5.53 -90.61 -0.50 -2.21 16 15 C -0.17 -1.97 10.18 -26.73 -0.27 -2.25 16 16 C -0.19 -1.92 10.25 -26.73 -0.27 -2.19 16 17 C 0.02 0.29 5.65 -67.71 -0.38 -0.09 16 18 C -0.22 -2.85 9.53 -26.69 -0.25 -3.11 16 19 C -0.17 -2.17 9.97 -26.69 -0.27 -2.44 16 20 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 21 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 23 H 0.05 0.97 6.57 -51.93 -0.34 0.63 16 24 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 25 H 0.07 1.32 5.85 -51.93 -0.30 1.02 16 26 H 0.03 0.59 7.89 -51.93 -0.41 0.18 16 27 H 0.04 0.50 8.12 -51.93 -0.42 0.08 16 28 H 0.08 1.30 6.11 -51.93 -0.32 0.99 16 29 H 0.10 1.22 6.74 -51.93 -0.35 0.87 16 30 H 0.10 1.15 8.03 -51.93 -0.42 0.73 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.11 1.32 6.68 -51.93 -0.35 0.97 16 35 H 0.10 1.48 5.92 -51.93 -0.31 1.17 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.10 1.36 7.71 -51.93 -0.40 0.96 16 LS Contribution 304.17 15.07 4.58 4.58 Total: -1.00 -29.85 304.17 -9.97 -39.82 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.54 Total: -0.07 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: -2.67 Total: -25.83 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: -0.32 Total: -35.45 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.85 -9.97 -39.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070650067.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.699 kcal (2) G-P(sol) polarization free energy of solvation -29.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds